Wall clock time and date at job start Wed Apr 1 2020 05:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34771 * 119.99983 * 2 1 4 4 O 1.21566 * 119.99781 * 183.72324 * 3 2 1 5 5 C 1.47709 * 120.00072 * 3.73188 * 3 2 1 6 6 C 1.41504 * 126.51615 * 172.94783 * 5 3 2 7 7 C 1.35367 * 105.50228 * 180.09906 * 6 5 3 8 8 C 1.50704 * 126.38779 * 179.89889 * 7 6 5 9 9 H 1.08999 * 110.72137 * 356.34863 * 8 7 6 10 10 C 1.55100 * 110.68505 * 119.36623 * 8 7 6 11 11 C 1.54592 * 102.84228 * 155.78247 * 10 8 7 12 12 C 1.53995 * 105.22858 * 338.14786 * 11 10 8 13 13 N 1.47902 * 107.05655 * 358.73082 * 12 11 10 14 14 C 1.46897 * 111.00408 * 145.84271 * 13 12 11 15 15 N 1.35034 * 107.22697 * 359.62945 * 7 6 5 16 16 H 0.96998 * 124.88407 * 180.26261 * 15 7 6 17 17 N 1.28472 * 110.23206 * 0.24539 * 15 7 6 18 18 C 1.46498 * 119.99662 * 180.02562 * 2 1 3 19 19 C 1.53784 * 113.61609 * 37.49599 * 18 2 1 20 20 C 1.53784 * 87.07975 * 220.01715 * 19 18 2 21 21 N 1.46504 * 113.68718 * 139.99415 * 20 19 18 22 22 C 1.36937 * 119.99804 * 107.46470 * 21 20 19 23 23 H 1.07995 * 120.00218 * 359.97438 * 22 21 20 24 24 C 1.38809 * 119.99577 * 179.97438 * 22 21 20 25 25 N 1.31621 * 120.00526 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99865 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47180 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47144 * 119.99949 * 26 24 22 29 29 H 1.48502 * 109.47432 * 240.00132 * 26 24 22 30 30 C 1.53780 * 87.08212 * 25.43321 * 20 19 18 31 31 H 1.08996 * 109.47102 * 83.98572 * 1 2 3 32 32 H 1.09004 * 109.47645 * 203.98785 * 1 2 3 33 33 H 1.09005 * 109.47090 * 323.98798 * 1 2 3 34 34 H 1.08000 * 127.25162 * 359.97343 * 6 5 3 35 35 H 1.08997 * 110.70913 * 37.47168 * 10 8 7 36 36 H 1.09001 * 110.80905 * 274.13878 * 10 8 7 37 37 H 1.08999 * 110.30799 * 219.18498 * 11 10 8 38 38 H 1.09005 * 110.31347 * 97.11582 * 11 10 8 39 39 H 1.09004 * 109.91356 * 118.07779 * 12 11 10 40 40 H 1.08993 * 109.92076 * 239.17681 * 12 11 10 41 41 H 1.09000 * 109.46903 * 60.12171 * 14 13 12 42 42 H 1.08994 * 109.47372 * 180.12653 * 14 13 12 43 43 H 1.09001 * 109.47057 * 300.12406 * 14 13 12 44 44 H 1.09002 * 112.84749 * 168.80544 * 18 2 1 45 45 H 1.08999 * 113.61300 * 334.57178 * 19 18 2 46 46 H 1.08997 * 113.60939 * 105.47095 * 19 18 2 47 47 H 1.09000 * 113.61741 * 270.88187 * 20 19 18 48 48 H 0.97001 * 119.99775 * 287.46496 * 21 20 19 49 49 H 0.97001 * 120.00398 * 180.02562 * 25 24 22 50 50 H 1.09000 * 113.61263 * 220.01817 * 30 20 19 51 51 H 1.09004 * 113.68798 * 89.12327 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3526 1.1682 -0.0684 5 6 1.4027 2.4450 0.0833 6 6 1.9673 3.7338 0.2333 7 6 0.9173 4.5876 0.2630 8 6 0.9870 6.0858 0.4109 9 1 2.0167 6.4111 0.5591 10 6 0.3654 6.7878 -0.8246 11 6 -0.0489 8.1674 -0.2636 12 6 -0.1712 7.9651 1.2581 13 7 0.1264 6.5425 1.5319 14 6 0.8140 6.3869 2.8207 15 7 -0.2041 3.8472 0.1294 16 1 -1.1059 4.2041 0.1135 17 7 0.0953 2.6022 0.0259 18 6 2.1974 -1.2688 -0.0006 19 6 1.5372 -2.3608 -0.8588 20 6 1.9128 -3.3527 0.2549 21 7 0.8727 -4.3460 0.5337 22 6 1.0474 -5.6476 0.1455 23 1 1.9516 -5.9417 -0.3665 24 6 0.0621 -6.5888 0.4102 25 7 -1.0402 -6.2303 1.0338 26 14 0.2999 -8.3642 -0.1199 27 1 1.6131 -8.5065 -0.7986 28 1 0.2609 -9.2467 1.0738 29 1 -0.7854 -8.7507 -1.0569 30 6 1.8953 -2.1550 1.2193 31 1 -0.3633 0.1077 -1.0220 32 1 -0.3634 -0.9389 0.4178 33 1 -0.3633 0.8313 0.6042 34 1 3.0152 3.9836 0.3102 35 1 -0.5060 6.2391 -1.1819 36 1 1.1039 6.9001 -1.6185 37 1 -1.0074 8.4738 -0.6827 38 1 0.7158 8.9116 -0.4861 39 1 0.5469 8.6010 1.7760 40 1 -1.1829 8.2055 1.5846 41 1 0.1789 6.7694 3.6198 42 1 1.0228 5.3317 2.9961 43 1 1.7504 6.9445 2.8025 44 1 3.2624 -1.1426 -0.1955 45 1 0.4623 -2.2290 -0.9819 46 1 2.0526 -2.5467 -1.8010 47 1 2.9000 -3.7974 0.1288 48 1 0.0604 -4.0817 0.9933 49 1 -1.7285 -6.8882 1.2191 50 1 2.6997 -2.1748 1.9546 51 1 0.9187 -1.9660 1.6652 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998806688.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:58 Heat of formation + Delta-G solvation = 94.345364 kcal Electronic energy + Delta-G solvation = -30247.324994 eV Core-core repulsion = 26184.862087 eV Total energy + Delta-G solvation = -4062.462907 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.92226 -39.86325 -39.36656 -37.78606 -34.70591 -33.15339 -32.76177 -32.11523 -31.83552 -29.89847 -28.28288 -26.77932 -26.11749 -25.26177 -24.97318 -23.73184 -22.60990 -21.47813 -21.47212 -21.17534 -19.01844 -18.67926 -18.06073 -17.04440 -16.88097 -16.56714 -16.09610 -16.01036 -15.45868 -14.87898 -14.69957 -14.55525 -14.42801 -14.32295 -13.83410 -13.74999 -13.68897 -13.02338 -13.00773 -12.81294 -12.68977 -12.31364 -12.20439 -12.09049 -11.96871 -11.94011 -11.73388 -11.68119 -11.24447 -11.20280 -10.88558 -10.70787 -10.52598 -10.36821 -10.19682 -9.98238 -9.81293 -9.52542 -9.49782 -9.24596 -9.10381 -8.86786 -8.28893 -6.94885 -5.77159 -3.05694 1.50377 1.86054 2.65685 3.18535 3.38108 3.44156 3.46719 3.50385 3.52361 3.98371 4.04099 4.29798 4.34200 4.47605 4.61039 4.63297 4.79693 4.90139 4.95146 4.97101 5.15566 5.19394 5.22083 5.29678 5.30116 5.39821 5.44450 5.45517 5.47226 5.50313 5.51075 5.56663 5.61063 5.84114 5.92258 6.00800 6.06542 6.18354 6.23357 6.25695 6.36887 6.37303 6.42010 6.55895 6.63826 6.81400 6.90653 7.12124 7.60102 7.72439 7.75119 8.32731 8.41393 9.52761 10.10148 10.44901 11.45323 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.027984 B = 0.001769 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.339044 B =15826.341754 C =16134.623724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.583 5.583 3 C 0.596 3.404 4 O -0.542 6.542 5 C -0.005 4.005 6 C -0.175 4.175 7 C 0.033 3.967 8 C 0.130 3.870 9 H 0.083 0.917 10 C -0.118 4.118 11 C -0.132 4.132 12 C 0.035 3.965 13 N -0.522 5.522 14 C 0.015 3.985 15 N -0.368 5.368 16 H 0.445 0.555 17 N -0.249 5.249 18 C 0.116 3.884 19 C -0.173 4.173 20 C 0.169 3.831 21 N -0.710 5.710 22 C -0.242 4.242 23 H 0.073 0.927 24 C -0.014 4.014 25 N -0.933 5.933 26 Si 0.907 3.093 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 C -0.162 4.162 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.159 0.841 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.033 0.967 44 H 0.115 0.885 45 H 0.084 0.916 46 H 0.060 0.940 47 H 0.080 0.920 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.064 0.936 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.121 33.421 -0.701 33.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.314 5.314 3 C 0.383 3.617 4 O -0.418 6.418 5 C -0.165 4.165 6 C -0.203 4.203 7 C -0.094 4.094 8 C 0.021 3.979 9 H 0.101 0.899 10 C -0.156 4.156 11 C -0.170 4.170 12 C -0.093 4.093 13 N -0.246 5.246 14 C -0.133 4.133 15 N -0.081 5.081 16 H 0.290 0.710 17 N -0.086 5.086 18 C 0.013 3.987 19 C -0.215 4.215 20 C 0.056 3.944 21 N -0.348 5.348 22 C -0.373 4.373 23 H 0.091 0.909 24 C -0.210 4.210 25 N -0.581 5.581 26 Si 0.738 3.262 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.219 1.219 30 C -0.202 4.202 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.177 0.823 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.051 0.949 44 H 0.133 0.867 45 H 0.102 0.898 46 H 0.079 0.921 47 H 0.098 0.902 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.083 0.917 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.381 32.269 -0.850 32.282 hybrid contribution 0.579 0.251 0.012 0.631 sum 0.960 32.519 -0.838 32.544 Atomic orbital electron populations 1.22079 0.78687 1.03772 1.02388 1.47721 1.07547 1.05334 1.70769 1.17008 0.86157 0.81790 0.76792 1.90758 1.12925 1.86745 1.51380 1.21940 0.89642 0.95307 1.09590 1.21460 0.99786 0.90350 1.08742 1.20858 0.86944 0.93988 1.07629 1.21280 0.97283 0.87397 0.91975 0.89909 1.22582 1.01127 0.95445 0.96467 1.22424 1.02489 0.97284 0.94820 1.22882 1.02023 0.88351 0.96006 1.64617 1.40770 1.17254 1.01977 1.22539 0.97049 1.02676 0.91063 1.43349 1.09625 1.03477 1.51679 0.70995 1.73852 1.16418 0.99149 1.19132 1.22660 0.97269 0.80124 0.98691 1.24323 1.01149 0.96484 0.99572 1.21350 0.93723 0.87278 0.92003 1.42364 1.18601 1.05207 1.68591 1.19372 1.02101 0.85225 1.30613 0.90918 1.24762 0.96695 0.98269 1.01242 1.69670 1.08329 1.33494 1.46606 0.86111 0.77265 0.85078 0.77704 1.20491 1.21884 1.21901 1.23932 1.01907 0.97183 0.97204 0.92689 0.90543 0.89177 0.82306 0.90753 0.89991 0.90528 0.91020 0.93277 0.89893 0.90985 0.90882 0.94873 0.86734 0.89785 0.92119 0.90228 0.78106 0.93546 0.91728 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.03 8.34 59.85 0.50 1.53 16 2 N -0.58 -9.17 3.08 -174.16 -0.54 -9.71 16 3 C 0.60 9.74 7.68 -12.39 -0.10 9.64 16 4 O -0.54 -10.18 16.41 5.31 0.09 -10.09 16 5 C 0.00 -0.07 6.81 -82.77 -0.56 -0.63 16 6 C -0.17 -1.97 10.73 -39.36 -0.42 -2.39 16 7 C 0.03 0.28 5.90 -82.20 -0.49 -0.20 16 8 C 0.13 0.80 2.78 -66.85 -0.19 0.61 16 9 H 0.08 0.48 7.96 -51.93 -0.41 0.07 16 10 C -0.12 -0.55 6.50 -24.78 -0.16 -0.71 16 11 C -0.13 -0.47 6.92 -25.38 -0.18 -0.65 16 12 C 0.04 0.15 6.70 -2.75 -0.02 0.13 16 13 N -0.52 -3.10 5.23 -232.11 -1.21 -4.31 16 14 C 0.02 0.09 9.30 60.06 0.56 0.65 16 15 N -0.37 -3.26 6.82 33.50 0.23 -3.03 16 16 H 0.45 2.82 8.96 -190.44 -1.71 1.11 16 17 N -0.25 -2.94 8.77 33.42 0.29 -2.65 16 18 C 0.12 1.93 4.22 -67.12 -0.28 1.64 16 19 C -0.17 -3.11 7.28 -25.92 -0.19 -3.29 16 20 C 0.17 3.40 4.48 -67.12 -0.30 3.10 16 21 N -0.71 -17.78 5.40 -52.64 -0.28 -18.07 16 22 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 23 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 26 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 30 C -0.16 -2.84 7.35 -25.92 -0.19 -3.03 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.11 6.11 -51.93 -0.32 0.80 16 33 H 0.09 1.18 5.37 -51.93 -0.28 0.90 16 34 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.07 0.36 8.04 -51.93 -0.42 -0.05 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.05 0.19 7.73 -51.93 -0.40 -0.21 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.53 8.00 -51.93 -0.42 0.12 16 43 H 0.03 0.17 8.00 -51.93 -0.42 -0.24 16 44 H 0.11 1.95 7.21 -51.93 -0.37 1.58 16 45 H 0.08 1.56 6.58 -51.93 -0.34 1.22 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 48 H 0.38 10.18 7.93 -40.82 -0.32 9.86 16 49 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 50 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 51 H 0.08 1.45 6.99 -51.93 -0.36 1.09 16 LS Contribution 406.45 15.07 6.13 6.13 Total: -1.00 -33.00 406.45 -11.40 -44.40 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -9.54 Total: 8.26 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -2.26 Total: -0.96 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: -0.79 Total: -65.15 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.00 -11.40 -44.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998806688.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.747 kcal (2) G-P(sol) polarization free energy of solvation -32.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds