Wall clock time and date at job start Wed Apr 1 2020 05:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34771 * 119.99983 * 2 1 4 4 O 1.21566 * 119.99781 * 183.72324 * 3 2 1 5 5 C 1.47709 * 120.00072 * 3.73188 * 3 2 1 6 6 C 1.41504 * 126.51615 * 172.94783 * 5 3 2 7 7 C 1.35367 * 105.50228 * 180.09906 * 6 5 3 8 8 C 1.50704 * 126.38779 * 179.89889 * 7 6 5 9 9 H 1.08999 * 110.72137 * 356.34863 * 8 7 6 10 10 C 1.55100 * 110.68505 * 119.36623 * 8 7 6 11 11 C 1.54592 * 102.84228 * 155.78247 * 10 8 7 12 12 C 1.53995 * 105.22858 * 338.14786 * 11 10 8 13 13 N 1.47902 * 107.05655 * 358.73082 * 12 11 10 14 14 C 1.46897 * 111.00408 * 145.84271 * 13 12 11 15 15 N 1.35034 * 107.22697 * 359.62945 * 7 6 5 16 16 H 0.96998 * 124.88407 * 180.26261 * 15 7 6 17 17 N 1.28472 * 110.23206 * 0.24539 * 15 7 6 18 18 C 1.46498 * 119.99662 * 180.02562 * 2 1 3 19 19 C 1.53784 * 113.61609 * 37.49599 * 18 2 1 20 20 C 1.53784 * 87.07975 * 220.01715 * 19 18 2 21 21 N 1.46504 * 113.68718 * 139.99415 * 20 19 18 22 22 C 1.36937 * 119.99804 * 107.46470 * 21 20 19 23 23 H 1.07995 * 120.00218 * 359.97438 * 22 21 20 24 24 C 1.38809 * 119.99577 * 179.97438 * 22 21 20 25 25 N 1.31621 * 120.00526 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99865 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47180 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47144 * 119.99949 * 26 24 22 29 29 H 1.48502 * 109.47432 * 240.00132 * 26 24 22 30 30 C 1.53780 * 87.08212 * 25.43321 * 20 19 18 31 31 H 1.08996 * 109.47102 * 83.98572 * 1 2 3 32 32 H 1.09004 * 109.47645 * 203.98785 * 1 2 3 33 33 H 1.09005 * 109.47090 * 323.98798 * 1 2 3 34 34 H 1.08000 * 127.25162 * 359.97343 * 6 5 3 35 35 H 1.08997 * 110.70913 * 37.47168 * 10 8 7 36 36 H 1.09001 * 110.80905 * 274.13878 * 10 8 7 37 37 H 1.08999 * 110.30799 * 219.18498 * 11 10 8 38 38 H 1.09005 * 110.31347 * 97.11582 * 11 10 8 39 39 H 1.09004 * 109.91356 * 118.07779 * 12 11 10 40 40 H 1.08993 * 109.92076 * 239.17681 * 12 11 10 41 41 H 1.09000 * 109.46903 * 60.12171 * 14 13 12 42 42 H 1.08994 * 109.47372 * 180.12653 * 14 13 12 43 43 H 1.09001 * 109.47057 * 300.12406 * 14 13 12 44 44 H 1.09002 * 112.84749 * 168.80544 * 18 2 1 45 45 H 1.08999 * 113.61300 * 334.57178 * 19 18 2 46 46 H 1.08997 * 113.60939 * 105.47095 * 19 18 2 47 47 H 1.09000 * 113.61741 * 270.88187 * 20 19 18 48 48 H 0.97001 * 119.99775 * 287.46496 * 21 20 19 49 49 H 0.97001 * 120.00398 * 180.02562 * 25 24 22 50 50 H 1.09000 * 113.61263 * 220.01817 * 30 20 19 51 51 H 1.09004 * 113.68798 * 89.12327 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3526 1.1682 -0.0684 5 6 1.4027 2.4450 0.0833 6 6 1.9673 3.7338 0.2333 7 6 0.9173 4.5876 0.2630 8 6 0.9870 6.0858 0.4109 9 1 2.0167 6.4111 0.5591 10 6 0.3654 6.7878 -0.8246 11 6 -0.0489 8.1674 -0.2636 12 6 -0.1712 7.9651 1.2581 13 7 0.1264 6.5425 1.5319 14 6 0.8140 6.3869 2.8207 15 7 -0.2041 3.8472 0.1294 16 1 -1.1059 4.2041 0.1135 17 7 0.0953 2.6022 0.0259 18 6 2.1974 -1.2688 -0.0006 19 6 1.5372 -2.3608 -0.8588 20 6 1.9128 -3.3527 0.2549 21 7 0.8727 -4.3460 0.5337 22 6 1.0474 -5.6476 0.1455 23 1 1.9516 -5.9417 -0.3665 24 6 0.0621 -6.5888 0.4102 25 7 -1.0402 -6.2303 1.0338 26 14 0.2999 -8.3642 -0.1199 27 1 1.6131 -8.5065 -0.7986 28 1 0.2609 -9.2467 1.0738 29 1 -0.7854 -8.7507 -1.0569 30 6 1.8953 -2.1550 1.2193 31 1 -0.3633 0.1077 -1.0220 32 1 -0.3634 -0.9389 0.4178 33 1 -0.3633 0.8313 0.6042 34 1 3.0152 3.9836 0.3102 35 1 -0.5060 6.2391 -1.1819 36 1 1.1039 6.9001 -1.6185 37 1 -1.0074 8.4738 -0.6827 38 1 0.7158 8.9116 -0.4861 39 1 0.5469 8.6010 1.7760 40 1 -1.1829 8.2055 1.5846 41 1 0.1789 6.7694 3.6198 42 1 1.0228 5.3317 2.9961 43 1 1.7504 6.9445 2.8025 44 1 3.2624 -1.1426 -0.1955 45 1 0.4623 -2.2290 -0.9819 46 1 2.0526 -2.5467 -1.8010 47 1 2.9000 -3.7974 0.1288 48 1 0.0604 -4.0817 0.9933 49 1 -1.7285 -6.8882 1.2191 50 1 2.6997 -2.1748 1.9546 51 1 0.9187 -1.9660 1.6652 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998806688.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:57 Heat of formation + Delta-G solvation = 71.637190 kcal Electronic energy + Delta-G solvation = -30248.309695 eV Core-core repulsion = 26184.862087 eV Total energy + Delta-G solvation = -4063.447607 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.77892 -41.17337 -39.85562 -39.22301 -36.22603 -34.92688 -33.20041 -32.83240 -32.79721 -31.80602 -28.87621 -27.99812 -26.81901 -26.53298 -26.43725 -25.39337 -23.45747 -22.68237 -21.96040 -21.78736 -20.47850 -19.93015 -19.03918 -18.86486 -17.92165 -17.45762 -17.03373 -16.94668 -16.39090 -16.22560 -15.90795 -15.85349 -15.34281 -15.23293 -14.94952 -14.77719 -14.48589 -14.34651 -14.18057 -14.06813 -13.49316 -13.38882 -13.37649 -13.21228 -13.12430 -12.81021 -12.68635 -12.52099 -12.40876 -12.22826 -12.11770 -12.07970 -11.98012 -11.79329 -11.59649 -11.46721 -11.44588 -11.08545 -10.87423 -10.42853 -10.02761 -9.59883 -9.54865 -8.98402 -7.93812 -5.22166 0.49675 1.02826 1.49265 1.49306 1.59672 1.76519 2.13330 2.29117 2.57993 2.90039 3.27421 3.37831 3.55887 3.64125 3.71422 3.81191 3.90524 3.95058 4.05021 4.07936 4.19877 4.27962 4.29014 4.38001 4.40821 4.48824 4.51882 4.59619 4.67519 4.73253 4.76865 4.83516 4.86403 4.88914 4.94914 4.99866 5.00432 5.04534 5.08860 5.13081 5.14199 5.27932 5.30716 5.44376 5.53586 5.65485 5.79754 5.93458 6.10028 6.28133 6.36836 6.82759 7.09835 7.34749 8.09541 8.33865 9.29545 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.027984 B = 0.001769 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.339044 B =15826.341754 C =16134.623724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.585 5.585 3 C 0.593 3.407 4 O -0.573 6.573 5 C -0.031 4.031 6 C -0.190 4.190 7 C 0.055 3.945 8 C 0.130 3.870 9 H 0.089 0.911 10 C -0.117 4.117 11 C -0.126 4.126 12 C 0.034 3.966 13 N -0.530 5.530 14 C 0.016 3.984 15 N -0.352 5.352 16 H 0.458 0.542 17 N -0.255 5.255 18 C 0.129 3.871 19 C -0.161 4.161 20 C 0.155 3.845 21 N -0.722 5.722 22 C -0.243 4.243 23 H 0.078 0.922 24 C -0.076 4.076 25 N -0.969 5.969 26 Si 0.972 3.028 27 H -0.266 1.266 28 H -0.294 1.294 29 H -0.294 1.294 30 C -0.150 4.150 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.162 0.838 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.055 0.945 43 H 0.040 0.960 44 H 0.114 0.886 45 H 0.078 0.922 46 H 0.066 0.934 47 H 0.082 0.918 48 H 0.375 0.625 49 H 0.251 0.749 50 H 0.072 0.928 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.101 35.549 -1.254 35.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.315 5.315 3 C 0.381 3.619 4 O -0.452 6.452 5 C -0.190 4.190 6 C -0.219 4.219 7 C -0.073 4.073 8 C 0.020 3.980 9 H 0.107 0.893 10 C -0.155 4.155 11 C -0.164 4.164 12 C -0.093 4.093 13 N -0.255 5.255 14 C -0.132 4.132 15 N -0.067 5.067 16 H 0.306 0.694 17 N -0.093 5.093 18 C 0.025 3.975 19 C -0.202 4.202 20 C 0.045 3.955 21 N -0.360 5.360 22 C -0.375 4.375 23 H 0.096 0.904 24 C -0.268 4.268 25 N -0.619 5.619 26 Si 0.802 3.198 27 H -0.190 1.190 28 H -0.222 1.222 29 H -0.222 1.222 30 C -0.190 4.190 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.180 0.820 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.132 0.868 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.100 0.900 48 H 0.207 0.793 49 H 0.059 0.941 50 H 0.091 0.909 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.377 34.436 -1.420 34.468 hybrid contribution 0.584 -0.255 0.195 0.667 sum 0.962 34.181 -1.225 34.216 Atomic orbital electron populations 1.22104 0.77590 1.03713 1.02904 1.47744 1.08162 1.04937 1.70661 1.17358 0.85983 0.82597 0.75927 1.90726 1.14272 1.87329 1.52866 1.21656 0.90437 0.94819 1.12067 1.21594 1.00691 0.89933 1.09686 1.21133 0.85901 0.95044 1.05201 1.21366 0.97998 0.85528 0.93077 0.89312 1.22600 1.01127 0.95920 0.95854 1.22412 1.03252 0.96707 0.94059 1.22935 1.02400 0.87259 0.96689 1.64590 1.40581 1.18571 1.01730 1.22512 0.97641 1.01661 0.91412 1.43395 1.10484 1.02739 1.50115 0.69444 1.73740 1.15609 1.00541 1.19409 1.22395 0.97183 0.80465 0.97419 1.24103 1.00962 0.95955 0.99209 1.21620 0.92651 0.87246 0.94029 1.42501 1.19311 1.05360 1.68793 1.19757 1.01898 0.86446 1.29392 0.90384 1.25551 0.96760 1.02227 1.02232 1.69817 1.09199 1.34479 1.48454 0.85088 0.77504 0.80252 0.77001 1.19035 1.22158 1.22161 1.23778 1.02086 0.95797 0.97303 0.92094 0.91362 0.88183 0.82036 0.90838 0.89434 0.89705 0.90091 0.92701 0.89496 0.90315 0.92634 0.94161 0.86831 0.90346 0.91528 0.90003 0.79302 0.94051 0.90906 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.18 8.34 127.77 1.07 3.24 16 2 N -0.59 -18.24 3.08 -823.20 -2.54 -20.78 16 3 C 0.59 19.36 7.68 86.75 0.67 20.03 16 4 O -0.57 -21.71 16.41 -3.92 -0.06 -21.78 16 5 C -0.03 -0.84 6.81 42.46 0.29 -0.55 16 6 C -0.19 -4.16 10.73 22.41 0.24 -3.92 16 7 C 0.05 0.87 5.90 41.40 0.24 1.11 16 8 C 0.13 1.32 2.78 44.57 0.12 1.45 16 9 H 0.09 0.84 7.96 -2.39 -0.02 0.82 16 10 C -0.12 -0.80 6.50 31.86 0.21 -0.59 16 11 C -0.13 -0.54 6.92 31.47 0.22 -0.32 16 12 C 0.03 0.21 6.70 86.45 0.58 0.79 16 13 N -0.53 -5.18 5.23 -888.26 -4.65 -9.83 16 14 C 0.02 0.17 9.30 127.69 1.19 1.35 16 15 N -0.35 -5.67 6.82 -47.92 -0.33 -6.00 16 16 H 0.46 4.86 8.96 -219.99 -1.97 2.88 16 17 N -0.26 -5.77 8.77 -48.18 -0.42 -6.19 16 18 C 0.13 4.25 4.22 45.52 0.19 4.44 16 19 C -0.16 -5.70 7.28 31.12 0.23 -5.47 16 20 C 0.16 6.22 4.48 45.52 0.20 6.42 16 21 N -0.72 -36.49 5.40 -320.44 -1.73 -38.22 16 22 C -0.24 -13.52 9.97 84.03 0.84 -12.69 16 23 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 24 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 25 N -0.97 -59.28 13.06 21.65 0.28 -59.00 16 26 Si 0.97 46.37 29.55 68.60 2.03 48.40 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 28 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 29 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 30 C -0.15 -5.20 7.35 31.12 0.23 -4.97 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.98 6.11 -2.39 -0.01 1.97 16 33 H 0.10 2.56 5.37 -2.38 -0.01 2.54 16 34 H 0.16 3.34 8.06 -2.91 -0.02 3.31 16 35 H 0.07 0.53 8.04 -2.39 -0.02 0.51 16 36 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.08 0.23 8.14 -2.38 -0.02 0.21 16 39 H 0.05 0.29 7.73 -2.38 -0.02 0.27 16 40 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.05 0.77 8.00 -2.39 -0.02 0.75 16 43 H 0.04 0.35 8.00 -2.39 -0.02 0.33 16 44 H 0.11 3.83 7.21 -2.39 -0.02 3.81 16 45 H 0.08 2.89 6.58 -2.39 -0.02 2.88 16 46 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.08 3.23 8.10 -2.39 -0.02 3.22 16 48 H 0.37 20.21 7.93 -92.71 -0.73 19.48 16 49 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 50 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 51 H 0.08 2.80 6.99 -2.38 -0.02 2.78 16 Total: -1.00 -70.56 406.45 -2.20 -72.75 By element: Atomic # 1 Polarization: 35.95 SS G_CDS: -1.75 Total: 34.20 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 6.98 Total: 6.44 kcal Atomic # 7 Polarization: -130.63 SS G_CDS: -9.39 Total: -140.02 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.06 Total: -21.78 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -70.56 -2.20 -72.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998806688.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.389 kcal (2) G-P(sol) polarization free energy of solvation -70.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds