Wall clock time and date at job start Wed Apr 1 2020 05:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47850 * 110.99835 * 2 1 4 4 C 1.54905 * 104.79767 * 146.36575 * 3 2 1 5 5 C 1.55401 * 101.73937 * 323.01807 * 4 3 2 6 6 C 1.47441 * 111.00202 * 120.84423 * 2 1 3 7 7 H 1.08993 * 109.88917 * 117.17634 * 6 2 1 8 8 C 1.50699 * 109.89025 * 356.14599 * 6 2 1 9 9 C 1.35366 * 126.38484 * 114.52545 * 8 6 2 10 10 C 1.41502 * 105.50360 * 180.14349 * 9 8 6 11 11 C 1.47709 * 126.51769 * 179.84780 * 10 9 8 12 12 O 1.21567 * 119.99910 * 6.65266 * 11 10 9 13 13 N 1.34778 * 119.99955 * 186.65735 * 11 10 9 14 14 C 1.47208 * 120.81121 * 355.47705 * 13 11 10 15 15 C 1.53200 * 108.85359 * 126.33903 * 14 13 11 16 16 C 1.53042 * 109.30972 * 54.64845 * 15 14 13 17 17 C 1.53035 * 109.54161 * 298.63373 * 16 15 14 18 18 H 1.09005 * 109.52729 * 301.40289 * 17 16 15 19 19 N 1.46503 * 109.50130 * 181.31680 * 17 16 15 20 20 C 1.36936 * 120.00076 * 155.16149 * 19 17 16 21 21 H 1.08007 * 119.99965 * 0.02562 * 20 19 17 22 22 C 1.38813 * 119.99832 * 180.02562 * 20 19 17 23 23 N 1.31617 * 119.99982 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99850 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47056 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47269 * 119.99862 * 24 22 20 27 27 H 1.48497 * 109.46887 * 240.00323 * 24 22 20 28 28 C 1.46919 * 120.63173 * 175.33229 * 13 11 10 29 29 N 1.31811 * 106.96353 * 359.58385 * 10 9 8 30 30 N 1.28470 * 110.06980 * 0.26255 * 29 10 9 31 31 H 0.97006 * 124.88087 * 180.02562 * 30 29 10 32 32 H 1.09005 * 109.46803 * 299.57456 * 1 2 3 33 33 H 1.08995 * 109.46964 * 59.57752 * 1 2 3 34 34 H 1.08999 * 109.46599 * 179.58149 * 1 2 3 35 35 H 1.09003 * 110.37068 * 265.19788 * 3 2 1 36 36 H 1.09003 * 110.37380 * 27.42387 * 3 2 1 37 37 H 1.08999 * 110.98796 * 81.01673 * 4 3 2 38 38 H 1.09000 * 110.99122 * 204.80332 * 4 3 2 39 39 H 1.08990 * 110.68343 * 277.17598 * 5 4 3 40 40 H 1.09002 * 110.84417 * 153.85868 * 5 4 3 41 41 H 1.07998 * 127.24826 * 359.97438 * 9 8 6 42 42 H 1.08997 * 109.53498 * 6.53754 * 14 13 11 43 43 H 1.09002 * 109.56162 * 246.15664 * 14 13 11 44 44 H 1.09000 * 109.49436 * 294.70265 * 15 14 13 45 45 H 1.08994 * 109.49877 * 174.60092 * 15 14 13 46 46 H 1.09003 * 109.45843 * 178.61739 * 16 15 14 47 47 H 1.09001 * 109.46159 * 58.65992 * 16 15 14 48 48 H 0.96994 * 119.99623 * 335.16756 * 19 17 16 49 49 H 0.96999 * 119.99678 * 180.02562 * 23 22 20 50 50 H 1.09007 * 109.58640 * 113.81956 * 28 13 11 51 51 H 1.08999 * 109.58763 * 353.54639 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3047 1.3028 0.8295 5 6 2.9182 0.2790 1.9329 6 6 1.9975 -0.7057 1.1818 7 1 2.5674 -1.5800 0.8675 8 6 0.8613 -1.1292 2.0766 9 6 0.4894 -2.4006 2.3552 10 6 -0.6176 -2.2880 3.2293 11 6 -1.3880 -3.4014 3.8199 12 8 -1.0154 -4.5480 3.6645 13 7 -2.5040 -3.1459 4.5310 14 6 -2.9174 -1.7617 4.8141 15 6 -4.3659 -1.5734 4.3521 16 6 -5.2486 -2.6381 5.0073 17 6 -4.7804 -4.0290 4.5736 18 1 -4.8287 -4.1074 3.4874 19 7 -5.6454 -5.0463 5.1763 20 6 -5.7768 -6.2728 4.5817 21 1 -5.2425 -6.4904 3.6686 22 6 -6.5969 -7.2364 5.1525 23 7 -7.2476 -6.9714 6.2654 24 14 -6.7757 -8.9098 4.3418 25 1 -5.9459 -8.9548 3.1111 26 1 -6.3243 -9.9664 5.2826 27 1 -8.1994 -9.1382 3.9868 28 6 -3.3366 -4.2452 5.0380 29 7 -0.8270 -1.0008 3.4209 30 7 0.0280 -0.3111 2.7548 31 1 0.0694 0.6579 2.7413 32 1 -0.3633 0.5072 0.8938 33 1 -0.3633 0.5204 -0.8861 34 1 -0.3632 -1.0277 -0.0075 35 1 2.2147 1.7039 -1.0183 36 1 1.2880 2.0596 0.4706 37 1 4.1302 0.9283 0.2242 38 1 3.5498 2.2723 1.2634 39 1 2.3783 0.7706 2.7421 40 1 3.8019 -0.2335 2.3132 41 1 0.9408 -3.3095 1.9857 42 1 -2.2693 -1.0704 4.2755 43 1 -2.8479 -1.5719 5.8852 44 1 -4.4180 -1.6744 3.2680 45 1 -4.7146 -0.5825 4.6429 46 1 -6.2839 -2.4912 4.6995 47 1 -5.1768 -2.5524 6.0916 48 1 -6.1250 -4.8509 5.9964 49 1 -7.8203 -7.6450 6.6644 50 1 -3.3012 -4.2579 6.1274 51 1 -2.9658 -5.1936 4.6494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999211871.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:41 Heat of formation + Delta-G solvation = 82.760132 kcal Electronic energy + Delta-G solvation = -31229.611656 eV Core-core repulsion = 27166.646375 eV Total energy + Delta-G solvation = -4062.965280 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.22670 -39.78372 -39.22257 -37.14873 -34.43536 -32.79174 -32.46664 -32.11932 -31.84106 -31.03961 -28.60751 -27.92310 -26.22102 -25.66448 -23.95121 -23.16026 -22.32553 -21.80970 -21.74584 -21.12459 -19.92551 -18.56000 -18.08599 -17.03226 -16.85333 -16.77474 -15.97642 -15.66090 -15.52050 -14.82675 -14.65949 -14.42162 -14.29371 -14.08779 -13.90416 -13.73218 -13.62028 -13.36407 -13.30143 -13.14578 -12.64874 -12.36772 -12.23023 -12.12631 -12.01654 -11.84177 -11.69195 -11.56606 -11.35238 -11.11608 -10.84825 -10.79354 -10.51895 -10.14640 -10.05509 -9.82802 -9.75583 -9.57147 -9.51143 -9.46043 -9.02502 -8.82563 -8.23712 -6.95043 -5.74598 -3.04026 1.39275 1.85970 2.45101 3.26463 3.45658 3.47861 3.54044 3.55939 3.56781 3.90033 4.03405 4.10620 4.27389 4.49408 4.62854 4.74131 4.78053 4.86709 4.91556 4.97073 5.13146 5.21324 5.24401 5.28679 5.29500 5.37435 5.42666 5.45159 5.53399 5.54755 5.55432 5.68387 5.71202 5.87840 5.90930 6.01587 6.16405 6.24032 6.26424 6.30949 6.33778 6.40769 6.44757 6.56783 6.66765 6.88216 6.90256 7.10914 7.58368 7.76642 7.79922 8.42224 8.45850 9.55524 10.09948 10.45493 11.47798 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021435 B = 0.002216 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.935679 B =12632.289581 C =13124.210609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.521 5.521 3 C 0.035 3.965 4 C -0.130 4.130 5 C -0.138 4.138 6 C 0.140 3.860 7 H 0.116 0.884 8 C 0.004 3.996 9 C -0.162 4.162 10 C 0.009 3.991 11 C 0.592 3.408 12 O -0.534 6.534 13 N -0.590 5.590 14 C 0.076 3.924 15 C -0.126 4.126 16 C -0.127 4.127 17 C 0.169 3.831 18 H 0.050 0.950 19 N -0.718 5.718 20 C -0.240 4.240 21 H 0.072 0.928 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.907 3.093 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.292 1.292 28 C 0.092 3.908 29 N -0.255 5.255 30 N -0.386 5.386 31 H 0.438 0.562 32 H 0.025 0.975 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.164 0.836 42 H 0.131 0.869 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.060 0.940 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.062 0.938 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.861 23.679 -9.975 33.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.245 5.245 3 C -0.093 4.093 4 C -0.168 4.168 5 C -0.177 4.177 6 C 0.031 3.969 7 H 0.134 0.866 8 C -0.123 4.123 9 C -0.190 4.190 10 C -0.152 4.152 11 C 0.377 3.623 12 O -0.409 6.409 13 N -0.323 5.323 14 C -0.048 4.048 15 C -0.165 4.165 16 C -0.165 4.165 17 C 0.058 3.942 18 H 0.068 0.932 19 N -0.359 5.359 20 C -0.371 4.371 21 H 0.090 0.910 22 C -0.208 4.208 23 N -0.581 5.581 24 Si 0.738 3.262 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.219 1.219 28 C -0.032 4.032 29 N -0.090 5.090 30 N -0.100 5.100 31 H 0.283 0.717 32 H 0.043 0.957 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.182 0.818 42 H 0.147 0.853 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.219 0.781 49 H 0.064 0.936 50 H 0.080 0.920 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 20.487 23.308 -10.058 32.621 hybrid contribution -0.262 -0.472 0.367 0.653 sum 20.225 22.835 -9.691 32.007 Atomic orbital electron populations 1.22726 0.86993 1.03074 1.00463 1.63894 1.08592 1.14282 1.37708 1.23185 0.95602 0.89282 1.01217 1.22775 0.97890 0.99370 0.96733 1.22944 1.00135 0.96827 0.97811 1.21231 0.90609 0.98698 0.86375 0.86640 1.21574 0.98278 0.90997 1.01432 1.21553 0.98392 0.96995 1.02100 1.22154 0.99591 0.90428 1.03044 1.17022 0.80327 0.86448 0.78492 1.90803 1.68658 1.20775 1.60653 1.48175 1.23580 1.08418 1.52106 1.22691 0.97244 0.83456 1.01414 1.21837 0.94841 0.98931 1.00868 1.21841 0.99331 0.95003 1.00337 1.20483 0.88561 0.88242 0.96916 0.93155 1.42390 1.52124 1.11643 1.29707 1.19332 1.22277 0.89792 1.05689 0.90960 1.24751 0.99901 0.98569 0.97620 1.69674 1.33609 1.34338 1.20459 0.86112 0.77279 0.84269 0.78566 1.20403 1.21806 1.21907 1.22823 0.92193 0.89583 0.98602 1.73251 1.13833 1.05025 1.16932 1.43723 1.22638 1.09643 1.33970 0.71675 0.95658 0.91060 0.90420 0.89566 0.93611 0.90005 0.90404 0.91627 0.89498 0.81820 0.85250 0.92070 0.91959 0.91337 0.91596 0.92125 0.78080 0.93566 0.91951 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 8.28 60.07 0.50 0.61 16 2 N -0.52 -3.43 5.44 -232.94 -1.27 -4.69 16 3 C 0.03 0.16 6.73 -2.30 -0.02 0.14 16 4 C -0.13 -0.47 7.08 -24.45 -0.17 -0.64 16 5 C -0.14 -0.62 6.48 -24.76 -0.16 -0.78 16 6 C 0.14 0.89 3.89 -67.87 -0.26 0.63 16 7 H 0.12 0.74 8.13 -51.93 -0.42 0.32 16 8 C 0.00 0.03 3.77 -82.21 -0.31 -0.28 16 9 C -0.16 -1.89 10.73 -39.36 -0.42 -2.31 16 10 C 0.01 0.12 6.90 -82.76 -0.57 -0.45 16 11 C 0.59 10.52 7.70 -12.39 -0.10 10.43 16 12 O -0.53 -11.31 16.36 5.31 0.09 -11.22 16 13 N -0.59 -10.12 2.98 -173.70 -0.52 -10.64 16 14 C 0.08 1.04 6.33 -3.55 -0.02 1.02 16 15 C -0.13 -1.71 6.08 -26.61 -0.16 -1.87 16 16 C -0.13 -2.13 5.35 -26.69 -0.14 -2.27 16 17 C 0.17 3.52 2.92 -67.81 -0.20 3.32 16 18 H 0.05 1.12 8.08 -51.93 -0.42 0.70 16 19 N -0.72 -18.33 5.13 -53.31 -0.27 -18.61 16 20 C -0.24 -6.83 9.93 -15.06 -0.15 -6.98 16 21 H 0.07 2.05 7.83 -52.48 -0.41 1.64 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 24 Si 0.91 23.05 29.55 -169.99 -5.02 18.02 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 C 0.09 1.86 5.99 -3.71 -0.02 1.84 16 29 N -0.26 -2.88 8.58 33.42 0.29 -2.59 16 30 N -0.39 -3.10 5.00 33.50 0.17 -2.93 16 31 H 0.44 2.26 7.95 -190.43 -1.51 0.74 16 32 H 0.03 0.16 5.31 -51.93 -0.28 -0.11 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.71 7.50 -51.93 -0.39 0.32 16 35 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.05 0.18 7.78 -51.93 -0.40 -0.22 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.06 0.29 7.37 -51.93 -0.38 -0.10 16 40 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.13 1.62 3.75 -112.66 -0.42 1.20 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.39 10.31 7.80 -40.82 -0.32 9.99 16 49 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 50 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 51 H 0.09 2.09 7.03 -51.93 -0.37 1.72 16 LS Contribution 395.55 15.07 5.96 5.96 Total: -1.00 -33.71 395.55 -11.70 -45.41 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -9.53 Total: 7.10 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -2.31 Total: 1.94 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: -0.88 Total: -67.21 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.71 -11.70 -45.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999211871.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.170 kcal (2) G-P(sol) polarization free energy of solvation -33.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds