Wall clock time and date at job start Wed Apr 1 2020 05:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.29106 * 126.00297 * 2 1 4 4 N 1.29026 * 110.25334 * 180.09718 * 3 2 1 5 5 C 1.32906 * 108.63648 * 0.02662 * 4 3 2 6 6 C 1.34392 * 126.00538 * 180.02562 * 2 1 3 7 7 C 1.50533 * 129.25770 * 359.69803 * 6 2 1 8 8 C 1.53434 * 108.32776 * 196.56333 * 7 6 2 9 9 H 1.09006 * 109.44423 * 70.29245 * 8 7 6 10 10 C 1.50693 * 109.46048 * 190.25547 * 8 7 6 11 11 O 1.21278 * 120.00428 * 0.08353 * 10 8 7 12 12 N 1.34780 * 119.99997 * 180.02562 * 10 8 7 13 13 C 1.46502 * 119.99987 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47308 * 180.02562 * 13 12 10 15 15 C 1.53040 * 109.46046 * 64.97513 * 14 13 12 16 16 C 1.53169 * 109.32747 * 181.39026 * 15 14 13 17 17 N 1.46920 * 108.76394 * 305.35342 * 16 15 14 18 18 C 1.36934 * 120.62867 * 233.63260 * 17 16 15 19 19 H 1.08001 * 120.00188 * 152.61077 * 18 17 16 20 20 C 1.38809 * 120.00302 * 332.60590 * 18 17 16 21 21 N 1.31617 * 120.00213 * 159.37131 * 20 18 17 22 22 Si 1.86799 * 119.99815 * 339.37793 * 20 18 17 23 23 H 1.48502 * 109.47406 * 92.92467 * 22 20 18 24 24 H 1.48504 * 109.47139 * 212.92608 * 22 20 18 25 25 H 1.48494 * 109.47265 * 332.92336 * 22 20 18 26 26 C 1.46924 * 118.74039 * 53.61519 * 17 16 15 27 27 C 1.53032 * 109.46441 * 185.03185 * 14 13 12 28 28 C 1.53109 * 109.55072 * 310.28485 * 8 7 6 29 29 C 1.50601 * 129.16046 * 179.89441 * 5 4 3 30 30 H 1.09000 * 109.46851 * 89.97844 * 1 2 3 31 31 H 1.08996 * 109.46945 * 209.97389 * 1 2 3 32 32 H 1.08994 * 109.47335 * 329.97408 * 1 2 3 33 33 H 1.09004 * 109.69615 * 76.85624 * 7 6 2 34 34 H 1.09002 * 109.69553 * 316.27252 * 7 6 2 35 35 H 0.97003 * 120.00018 * 0.02562 * 12 10 8 36 36 H 1.09005 * 109.46761 * 60.00602 * 13 12 10 37 37 H 1.08996 * 109.47389 * 300.00769 * 13 12 10 38 38 H 1.09004 * 109.45806 * 305.00562 * 14 13 12 39 39 H 1.09008 * 109.49507 * 301.32437 * 15 14 13 40 40 H 1.08997 * 109.49651 * 61.41927 * 15 14 13 41 41 H 1.08999 * 109.58368 * 185.56816 * 16 15 14 42 42 H 1.08997 * 109.59147 * 65.14270 * 16 15 14 43 43 H 0.97003 * 120.00155 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.58870 * 186.60405 * 26 17 16 45 45 H 1.09000 * 109.70794 * 66.24104 * 26 17 16 46 46 H 1.08998 * 109.49697 * 298.58332 * 27 14 13 47 47 H 1.09004 * 109.49658 * 58.67253 * 27 14 13 48 48 H 1.08998 * 109.45577 * 190.09940 * 28 8 7 49 49 H 1.09000 * 109.45054 * 310.05118 * 28 8 7 50 50 H 1.08994 * 109.68966 * 76.76741 * 29 5 4 51 51 H 1.09002 * 109.72603 * 316.19876 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4658 0.6942 -0.0021 5 6 3.5327 -0.6331 -0.0041 6 6 2.2551 -1.0872 -0.0005 7 6 1.8722 -2.5430 0.0050 8 6 3.1014 -3.3636 0.4172 9 1 3.3141 -3.1934 1.4726 10 6 2.8266 -4.8278 0.1903 11 8 1.7565 -5.1818 -0.2576 12 7 3.7705 -5.7440 0.4839 13 6 3.5031 -7.1675 0.2639 14 6 4.7282 -7.9862 0.6759 15 6 4.9531 -7.8441 2.1830 16 6 6.2003 -8.6366 2.5864 17 7 6.0475 -10.0240 2.1275 18 6 6.1893 -11.0678 3.0024 19 1 5.6733 -11.9989 2.8204 20 6 6.9964 -10.9292 4.1232 21 7 6.8335 -11.7305 5.1546 22 14 8.3136 -9.6055 4.1677 23 1 7.7616 -8.3787 4.7968 24 1 9.4740 -10.0882 4.9588 25 1 8.7525 -9.2971 2.7831 26 6 5.7393 -10.2701 0.7122 27 6 4.4973 -9.4589 0.3298 28 6 4.3083 -2.9351 -0.4218 29 6 4.7469 -1.5242 -0.0090 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3634 0.8897 0.5142 33 1 1.5488 -2.8416 -0.9922 34 1 1.0646 -2.7077 0.7183 35 1 4.6265 -5.4610 0.8417 36 1 3.2898 -7.3382 -0.7914 37 1 2.6446 -7.4728 0.8621 38 1 5.6054 -7.6209 0.1418 39 1 5.0945 -6.7923 2.4321 40 1 4.0865 -8.2320 2.7183 41 1 6.3086 -8.6202 3.6708 42 1 7.0811 -8.1931 2.1223 43 1 7.3973 -11.6334 5.9380 44 1 5.5436 -11.3315 0.5600 45 1 6.5820 -9.9615 0.0935 46 1 3.6350 -9.8316 0.8825 47 1 4.3141 -9.5568 -0.7403 48 1 5.1298 -3.6328 -0.2590 49 1 4.0354 -2.9357 -1.4771 50 1 5.1850 -1.5534 0.9886 51 1 5.4794 -1.1438 -0.7210 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001766924.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:12 Heat of formation + Delta-G solvation = 69.317178 kcal Electronic energy + Delta-G solvation = -30676.969872 eV Core-core repulsion = 26613.421661 eV Total energy + Delta-G solvation = -4063.548211 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.76288 -40.32698 -38.30905 -36.98262 -35.34962 -35.15166 -33.01627 -31.31514 -31.00866 -30.57867 -30.43168 -28.27060 -27.25471 -25.02517 -23.88189 -23.36896 -22.89520 -21.80784 -21.27495 -20.84624 -19.93841 -19.34919 -17.83691 -17.34125 -16.91578 -16.70994 -16.18429 -15.68213 -15.23851 -15.08115 -14.53731 -14.31821 -14.26818 -14.18014 -14.02267 -13.85992 -13.73741 -13.51307 -13.30114 -13.25347 -12.73719 -12.61568 -12.46013 -12.35232 -12.24157 -11.91153 -11.82750 -11.59003 -11.45194 -11.39670 -10.92537 -10.87885 -10.66972 -10.54140 -10.33767 -10.21690 -10.08960 -9.85717 -9.71029 -9.47055 -9.21774 -9.14928 -8.65364 -7.01145 -5.97779 -3.33609 1.19237 1.93023 2.19684 2.40328 2.94851 3.27345 3.44917 3.47224 3.74354 4.00038 4.15333 4.29429 4.33914 4.46166 4.47979 4.49432 4.70718 4.76367 4.78525 4.89388 4.93808 5.00420 5.01311 5.03803 5.14350 5.20468 5.36180 5.40133 5.44133 5.55622 5.62081 5.63771 5.70404 5.71463 5.82749 5.86453 5.88149 6.00765 6.12283 6.17787 6.22819 6.30960 6.34321 6.44406 6.59207 6.60693 6.65781 6.92065 7.31544 7.93603 8.00703 8.16348 8.30137 8.91499 9.69217 10.06886 11.18254 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.002088 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.026820 B =13407.996201 C =14150.116720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.283 5.283 3 N -0.098 5.098 4 N -0.261 5.261 5 C -0.021 4.021 6 C -0.016 4.016 7 C -0.024 4.024 8 C -0.103 4.103 9 H 0.106 0.894 10 C 0.519 3.481 11 O -0.543 6.543 12 N -0.722 5.722 13 C 0.124 3.876 14 C -0.092 4.092 15 C -0.128 4.128 16 C 0.125 3.875 17 N -0.606 5.606 18 C -0.259 4.259 19 H 0.085 0.915 20 C 0.022 3.978 21 N -0.908 5.908 22 Si 0.884 3.116 23 H -0.289 1.289 24 H -0.304 1.304 25 H -0.271 1.271 26 C 0.149 3.851 27 C -0.126 4.126 28 C -0.112 4.112 29 C -0.031 4.031 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.402 0.598 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.024 0.976 43 H 0.262 0.738 44 H 0.064 0.936 45 H 0.022 0.978 46 H 0.065 0.935 47 H 0.057 0.943 48 H 0.084 0.916 49 H 0.076 0.924 50 H 0.087 0.913 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.526 21.128 -12.432 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.075 5.075 3 N -0.076 5.076 4 N -0.125 5.125 5 C -0.161 4.161 6 C -0.151 4.151 7 C -0.063 4.063 8 C -0.125 4.125 9 H 0.125 0.875 10 C 0.305 3.695 11 O -0.421 6.421 12 N -0.373 5.373 13 C 0.000 4.000 14 C -0.111 4.111 15 C -0.168 4.168 16 C 0.000 4.000 17 N -0.330 5.330 18 C -0.388 4.388 19 H 0.103 0.897 20 C -0.177 4.177 21 N -0.551 5.551 22 Si 0.715 3.285 23 H -0.217 1.217 24 H -0.232 1.232 25 H -0.196 1.196 26 C 0.023 3.977 27 C -0.166 4.166 28 C -0.150 4.150 29 C -0.070 4.070 30 H 0.112 0.888 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.237 0.763 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.042 0.958 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.040 0.960 46 H 0.084 0.916 47 H 0.075 0.925 48 H 0.103 0.897 49 H 0.095 0.905 50 H 0.106 0.894 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.245 22.361 -12.589 28.017 hybrid contribution 0.874 -0.165 0.438 0.992 sum -10.371 22.196 -12.151 27.347 Atomic orbital electron populations 1.22310 0.72625 1.06078 1.05235 1.46834 1.09252 1.04569 1.46867 1.78601 0.96113 1.11248 1.21651 1.74806 1.09611 1.11934 1.16191 1.21693 0.94964 0.91395 1.08055 1.21813 0.91259 0.92255 1.09728 1.19903 0.97540 0.84601 1.04276 1.21340 0.96502 0.91736 1.02967 0.87550 1.20317 0.84081 0.87545 0.77591 1.90706 1.24572 1.81894 1.44881 1.46079 1.18074 1.07339 1.65840 1.21560 0.98751 0.78633 1.01023 1.21312 0.96391 0.96057 0.97299 1.22087 1.01160 0.98894 0.94643 1.21324 0.94129 0.85411 0.99178 1.44346 1.83063 1.01188 1.04360 1.18923 1.23303 0.94438 1.02112 0.89736 1.25295 0.98569 0.97448 0.96413 1.69838 1.40117 1.40568 1.04616 0.86932 0.82809 0.81194 0.77586 1.21701 1.23208 1.19613 1.20905 0.93345 0.98109 0.85349 1.21983 1.00917 0.93902 0.99802 1.21666 0.96587 0.96384 1.00354 1.19952 0.92599 0.91045 1.03454 0.88847 0.88132 0.87873 0.88448 0.89455 0.76308 0.91606 0.91354 0.91112 0.93142 0.91468 0.90976 0.95847 0.92774 0.91782 0.96031 0.91591 0.92461 0.89718 0.90510 0.89420 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.30 11.27 59.85 0.67 0.98 16 2 N -0.28 -2.49 3.73 -64.00 -0.24 -2.73 16 3 N -0.10 -1.17 13.19 60.35 0.80 -0.37 16 4 N -0.26 -3.31 12.40 33.16 0.41 -2.90 16 5 C -0.02 -0.21 7.11 -83.12 -0.59 -0.80 16 6 C -0.02 -0.14 6.76 -82.50 -0.56 -0.70 16 7 C -0.02 -0.17 4.71 -27.74 -0.13 -0.30 16 8 C -0.10 -0.74 2.50 -91.49 -0.23 -0.97 16 9 H 0.11 0.66 8.12 -51.93 -0.42 0.24 16 10 C 0.52 5.18 7.15 -10.99 -0.08 5.10 16 11 O -0.54 -7.36 15.82 5.56 0.09 -7.28 16 12 N -0.72 -6.84 5.09 -60.29 -0.31 -7.15 16 13 C 0.12 1.41 5.06 -4.04 -0.02 1.39 16 14 C -0.09 -1.19 2.19 -90.58 -0.20 -1.39 16 15 C -0.13 -1.98 5.24 -26.62 -0.14 -2.12 16 16 C 0.13 2.53 4.20 -3.73 -0.02 2.51 16 17 N -0.61 -13.66 2.77 -172.34 -0.48 -14.14 16 18 C -0.26 -7.06 10.03 -15.06 -0.15 -7.21 16 19 H 0.09 2.47 8.06 -52.49 -0.42 2.04 16 20 C 0.02 0.61 5.23 -17.43 -0.09 0.52 16 21 N -0.91 -27.45 13.97 55.49 0.78 -26.67 16 22 Si 0.88 21.78 24.34 -169.99 -4.14 17.64 16 23 H -0.29 -6.82 6.62 56.52 0.37 -6.45 16 24 H -0.30 -7.69 7.11 56.52 0.40 -7.28 16 25 H -0.27 -6.52 6.63 56.52 0.37 -6.14 16 26 C 0.15 2.72 6.52 -3.71 -0.02 2.70 16 27 C -0.13 -1.84 5.36 -26.62 -0.14 -1.98 16 28 C -0.11 -0.67 5.17 -26.46 -0.14 -0.81 16 29 C -0.03 -0.22 6.30 -27.72 -0.17 -0.39 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.10 0.21 7.71 -51.93 -0.40 -0.19 16 32 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.10 0.76 7.78 -51.93 -0.40 0.36 16 34 H 0.09 0.58 7.87 -51.93 -0.41 0.17 16 35 H 0.40 3.04 6.98 -40.82 -0.28 2.76 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.64 7.15 -51.92 -0.37 0.27 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.07 1.64 4.49 -51.93 -0.23 1.40 16 42 H 0.02 0.47 7.08 -51.93 -0.37 0.10 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 44 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.08 0.40 7.30 -51.93 -0.38 0.02 16 49 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 50 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 392.95 15.07 5.92 5.92 Total: -1.00 -35.52 392.95 -7.54 -43.06 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -8.37 Total: -1.94 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -2.01 Total: -3.46 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 0.96 Total: -53.96 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: 0.09 Total: -7.28 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.14 Total: 17.64 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.52 -7.54 -43.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001766924.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.382 kcal (2) G-P(sol) polarization free energy of solvation -35.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds