Wall clock time and date at job start Wed Apr 1 2020 05:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.29106 * 126.00297 * 2 1 4 4 N 1.29026 * 110.25334 * 180.09718 * 3 2 1 5 5 C 1.32906 * 108.63648 * 0.02662 * 4 3 2 6 6 C 1.34392 * 126.00538 * 180.02562 * 2 1 3 7 7 C 1.50533 * 129.25770 * 359.69803 * 6 2 1 8 8 C 1.53434 * 108.32776 * 196.56333 * 7 6 2 9 9 H 1.09006 * 109.44423 * 70.29245 * 8 7 6 10 10 C 1.50693 * 109.46048 * 190.25547 * 8 7 6 11 11 O 1.21278 * 120.00428 * 0.08353 * 10 8 7 12 12 N 1.34780 * 119.99997 * 180.02562 * 10 8 7 13 13 C 1.46502 * 119.99987 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47308 * 180.02562 * 13 12 10 15 15 C 1.53040 * 109.46046 * 64.97513 * 14 13 12 16 16 C 1.53169 * 109.32747 * 181.39026 * 15 14 13 17 17 N 1.46920 * 108.76394 * 305.35342 * 16 15 14 18 18 C 1.36934 * 120.62867 * 233.63260 * 17 16 15 19 19 H 1.08001 * 120.00188 * 152.61077 * 18 17 16 20 20 C 1.38809 * 120.00302 * 332.60590 * 18 17 16 21 21 N 1.31617 * 120.00213 * 159.37131 * 20 18 17 22 22 Si 1.86799 * 119.99815 * 339.37793 * 20 18 17 23 23 H 1.48502 * 109.47406 * 92.92467 * 22 20 18 24 24 H 1.48504 * 109.47139 * 212.92608 * 22 20 18 25 25 H 1.48494 * 109.47265 * 332.92336 * 22 20 18 26 26 C 1.46924 * 118.74039 * 53.61519 * 17 16 15 27 27 C 1.53032 * 109.46441 * 185.03185 * 14 13 12 28 28 C 1.53109 * 109.55072 * 310.28485 * 8 7 6 29 29 C 1.50601 * 129.16046 * 179.89441 * 5 4 3 30 30 H 1.09000 * 109.46851 * 89.97844 * 1 2 3 31 31 H 1.08996 * 109.46945 * 209.97389 * 1 2 3 32 32 H 1.08994 * 109.47335 * 329.97408 * 1 2 3 33 33 H 1.09004 * 109.69615 * 76.85624 * 7 6 2 34 34 H 1.09002 * 109.69553 * 316.27252 * 7 6 2 35 35 H 0.97003 * 120.00018 * 0.02562 * 12 10 8 36 36 H 1.09005 * 109.46761 * 60.00602 * 13 12 10 37 37 H 1.08996 * 109.47389 * 300.00769 * 13 12 10 38 38 H 1.09004 * 109.45806 * 305.00562 * 14 13 12 39 39 H 1.09008 * 109.49507 * 301.32437 * 15 14 13 40 40 H 1.08997 * 109.49651 * 61.41927 * 15 14 13 41 41 H 1.08999 * 109.58368 * 185.56816 * 16 15 14 42 42 H 1.08997 * 109.59147 * 65.14270 * 16 15 14 43 43 H 0.97003 * 120.00155 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.58870 * 186.60405 * 26 17 16 45 45 H 1.09000 * 109.70794 * 66.24104 * 26 17 16 46 46 H 1.08998 * 109.49697 * 298.58332 * 27 14 13 47 47 H 1.09004 * 109.49658 * 58.67253 * 27 14 13 48 48 H 1.08998 * 109.45577 * 190.09940 * 28 8 7 49 49 H 1.09000 * 109.45054 * 310.05118 * 28 8 7 50 50 H 1.08994 * 109.68966 * 76.76741 * 29 5 4 51 51 H 1.09002 * 109.72603 * 316.19876 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4658 0.6942 -0.0021 5 6 3.5327 -0.6331 -0.0041 6 6 2.2551 -1.0872 -0.0005 7 6 1.8722 -2.5430 0.0050 8 6 3.1014 -3.3636 0.4172 9 1 3.3141 -3.1934 1.4726 10 6 2.8266 -4.8278 0.1903 11 8 1.7565 -5.1818 -0.2576 12 7 3.7705 -5.7440 0.4839 13 6 3.5031 -7.1675 0.2639 14 6 4.7282 -7.9862 0.6759 15 6 4.9531 -7.8441 2.1830 16 6 6.2003 -8.6366 2.5864 17 7 6.0475 -10.0240 2.1275 18 6 6.1893 -11.0678 3.0024 19 1 5.6733 -11.9989 2.8204 20 6 6.9964 -10.9292 4.1232 21 7 6.8335 -11.7305 5.1546 22 14 8.3136 -9.6055 4.1677 23 1 7.7616 -8.3787 4.7968 24 1 9.4740 -10.0882 4.9588 25 1 8.7525 -9.2971 2.7831 26 6 5.7393 -10.2701 0.7122 27 6 4.4973 -9.4589 0.3298 28 6 4.3083 -2.9351 -0.4218 29 6 4.7469 -1.5242 -0.0090 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3634 0.8897 0.5142 33 1 1.5488 -2.8416 -0.9922 34 1 1.0646 -2.7077 0.7183 35 1 4.6265 -5.4610 0.8417 36 1 3.2898 -7.3382 -0.7914 37 1 2.6446 -7.4728 0.8621 38 1 5.6054 -7.6209 0.1418 39 1 5.0945 -6.7923 2.4321 40 1 4.0865 -8.2320 2.7183 41 1 6.3086 -8.6202 3.6708 42 1 7.0811 -8.1931 2.1223 43 1 7.3973 -11.6334 5.9380 44 1 5.5436 -11.3315 0.5600 45 1 6.5820 -9.9615 0.0935 46 1 3.6350 -9.8316 0.8825 47 1 4.3141 -9.5568 -0.7403 48 1 5.1298 -3.6328 -0.2590 49 1 4.0354 -2.9357 -1.4771 50 1 5.1850 -1.5534 0.9886 51 1 5.4794 -1.1438 -0.7210 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001766924.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:11 Heat of formation + Delta-G solvation = 43.934679 kcal Electronic energy + Delta-G solvation = -30678.070540 eV Core-core repulsion = 26613.421661 eV Total energy + Delta-G solvation = -4064.648878 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.44088 -41.11450 -39.59619 -37.66409 -36.43986 -35.87343 -34.52488 -32.88608 -31.85025 -31.54150 -31.40714 -28.79702 -28.50245 -26.10037 -24.94024 -24.30984 -24.20180 -22.64753 -22.39251 -21.63773 -20.87876 -20.36864 -18.80229 -18.43848 -17.94499 -17.47268 -17.19547 -16.90607 -16.40727 -15.89045 -15.75105 -15.34544 -15.19159 -15.04550 -14.90236 -14.81777 -14.68484 -14.53825 -14.19628 -14.12827 -13.92365 -13.67358 -13.56718 -13.34839 -13.11574 -13.03856 -12.93568 -12.58898 -12.48452 -12.19346 -12.14149 -12.06126 -11.94649 -11.67220 -11.57934 -11.54313 -11.28037 -11.16476 -10.96506 -10.75282 -10.62285 -10.00782 -9.87430 -8.88147 -8.13599 -5.44742 0.52834 1.32127 1.43018 1.44687 1.46873 1.53935 1.66358 2.21469 2.44818 3.09793 3.16748 3.40916 3.43833 3.71122 3.75844 3.78910 3.83554 3.92230 3.95569 4.05042 4.15336 4.23366 4.29194 4.44385 4.44549 4.48385 4.50982 4.56835 4.59214 4.65869 4.72207 4.80510 4.85808 4.90463 4.91856 4.92464 5.03772 5.07040 5.08997 5.15541 5.21657 5.24132 5.27531 5.32677 5.33045 5.48828 5.60756 5.65797 5.90746 6.15630 6.60574 6.97234 7.28533 7.44114 7.67908 8.06991 9.06555 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.002088 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.026820 B =13407.996201 C =14150.116720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.278 5.278 3 N -0.131 5.131 4 N -0.301 5.301 5 C -0.033 4.033 6 C -0.014 4.014 7 C -0.018 4.018 8 C -0.096 4.096 9 H 0.122 0.878 10 C 0.523 3.477 11 O -0.580 6.580 12 N -0.714 5.714 13 C 0.135 3.865 14 C -0.080 4.080 15 C -0.120 4.120 16 C 0.117 3.883 17 N -0.622 5.622 18 C -0.247 4.247 19 H 0.046 0.954 20 C -0.043 4.043 21 N -0.962 5.962 22 Si 0.953 3.047 23 H -0.271 1.271 24 H -0.317 1.317 25 H -0.256 1.256 26 C 0.142 3.858 27 C -0.119 4.119 28 C -0.104 4.104 29 C -0.029 4.029 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.415 0.585 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.040 0.960 43 H 0.260 0.740 44 H 0.049 0.951 45 H 0.040 0.960 46 H 0.048 0.952 47 H 0.089 0.911 48 H 0.106 0.894 49 H 0.072 0.928 50 H 0.099 0.901 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.286 23.280 -14.048 29.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.070 5.070 3 N -0.109 5.109 4 N -0.164 5.164 5 C -0.175 4.175 6 C -0.150 4.150 7 C -0.058 4.058 8 C -0.118 4.118 9 H 0.140 0.860 10 C 0.310 3.690 11 O -0.460 6.460 12 N -0.366 5.366 13 C 0.011 3.989 14 C -0.099 4.099 15 C -0.159 4.159 16 C -0.008 4.008 17 N -0.347 5.347 18 C -0.377 4.377 19 H 0.064 0.936 20 C -0.237 4.237 21 N -0.608 5.608 22 Si 0.782 3.218 23 H -0.198 1.198 24 H -0.246 1.246 25 H -0.180 1.180 26 C 0.017 3.983 27 C -0.158 4.158 28 C -0.142 4.142 29 C -0.068 4.068 30 H 0.127 0.873 31 H 0.139 0.861 32 H 0.131 0.869 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.252 0.748 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.107 0.893 48 H 0.124 0.876 49 H 0.090 0.910 50 H 0.118 0.882 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.016 24.578 -14.247 30.470 hybrid contribution 0.666 -0.924 0.878 1.438 sum -10.350 23.654 -13.370 29.076 Atomic orbital electron populations 1.22736 0.70193 1.07653 1.06774 1.47214 1.10671 1.03983 1.45180 1.78514 0.96437 1.12520 1.23416 1.74748 1.10328 1.13591 1.17743 1.22283 0.96611 0.90936 1.07641 1.22053 0.91036 0.92808 1.09078 1.19900 0.98025 0.83504 1.04340 1.21316 0.96799 0.89518 1.04128 0.85978 1.20692 0.83341 0.88464 0.76522 1.90702 1.26159 1.82594 1.46589 1.45963 1.18653 1.06424 1.65583 1.21276 0.97160 0.79485 1.00961 1.21193 0.97966 0.95142 0.95574 1.21968 0.97750 0.99946 0.96215 1.21436 0.97029 0.84621 0.97680 1.44504 1.83415 1.01221 1.05571 1.18858 1.21700 0.94560 1.02565 0.93635 1.25990 1.00956 1.00580 0.96169 1.69989 1.41577 1.43693 1.05553 0.85814 0.79013 0.78927 0.78058 1.19778 1.24596 1.18020 1.21107 0.95627 0.98334 0.83210 1.21871 0.98046 0.94429 1.01481 1.21645 0.96660 0.96144 0.99777 1.20064 0.91599 0.90841 1.04323 0.87292 0.86078 0.86877 0.88833 0.88628 0.74784 0.91030 0.92981 0.88958 0.89573 0.93566 0.93794 0.94227 0.93111 0.93257 0.94240 0.93330 0.89285 0.87566 0.90955 0.88228 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 11.27 127.77 1.44 1.83 16 2 N -0.28 -4.54 3.73 -356.41 -1.33 -5.87 16 3 N -0.13 -3.08 13.19 37.02 0.49 -2.60 16 4 N -0.30 -7.52 12.40 -48.99 -0.61 -8.13 16 5 C -0.03 -0.62 7.11 41.75 0.30 -0.32 16 6 C -0.01 -0.23 6.76 41.50 0.28 0.05 16 7 C -0.02 -0.22 4.71 29.94 0.14 -0.08 16 8 C -0.10 -1.03 2.50 -11.36 -0.03 -1.06 16 9 H 0.12 1.00 8.12 -2.38 -0.02 0.98 16 10 C 0.52 8.61 7.15 87.65 0.63 9.24 16 11 O -0.58 -14.25 15.82 -3.02 -0.05 -14.30 16 12 N -0.71 -10.43 5.09 -463.06 -2.36 -12.79 16 13 C 0.14 2.58 5.06 86.38 0.44 3.02 16 14 C -0.08 -1.75 2.19 -10.77 -0.02 -1.77 16 15 C -0.12 -3.29 5.24 30.66 0.16 -3.13 16 16 C 0.12 4.42 4.20 86.36 0.36 4.78 16 17 N -0.62 -27.52 2.77 -699.17 -1.94 -29.45 16 18 C -0.25 -13.76 10.03 84.03 0.84 -12.92 16 19 H 0.05 2.82 8.06 -2.91 -0.02 2.79 16 20 C -0.04 -2.47 5.23 84.86 0.44 -2.03 16 21 N -0.96 -60.28 13.97 21.65 0.30 -59.98 16 22 Si 0.95 45.12 24.34 68.60 1.67 46.79 16 23 H -0.27 -11.92 6.62 99.48 0.66 -11.26 16 24 H -0.32 -15.51 7.11 99.48 0.71 -14.81 16 25 H -0.26 -11.33 6.63 99.48 0.66 -10.67 16 26 C 0.14 4.94 6.52 86.36 0.56 5.51 16 27 C -0.12 -3.13 5.36 30.67 0.16 -2.96 16 28 C -0.10 -0.87 5.17 30.77 0.16 -0.71 16 29 C -0.03 -0.33 6.30 29.96 0.19 -0.14 16 30 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.12 0.21 7.71 -2.39 -0.02 0.20 16 32 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.09 1.25 7.78 -2.38 -0.02 1.23 16 34 H 0.10 1.01 7.87 -2.39 -0.02 0.99 16 35 H 0.41 4.00 6.98 -92.71 -0.65 3.35 16 36 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.09 1.77 7.15 -2.38 -0.02 1.75 16 40 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 41 H 0.04 1.91 4.49 -2.39 -0.01 1.90 16 42 H 0.04 1.39 7.08 -2.39 -0.02 1.37 16 43 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.05 1.82 7.93 -2.39 -0.02 1.80 16 45 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.11 0.46 7.30 -2.39 -0.02 0.45 16 49 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16 50 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -81.22 392.95 2.44 -78.78 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 0.20 Total: 8.23 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 6.06 Total: -0.69 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -5.44 Total: -118.81 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.05 Total: -14.30 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.67 Total: 46.79 kcal Total: -81.22 2.44 -78.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001766924.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.719 kcal (2) G-P(sol) polarization free energy of solvation -81.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds