Wall clock time and date at job start Wed Apr 1 2020 05:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.39895 * 125.74381 * 2 1 4 4 C 1.30292 * 109.22843 * 180.02562 * 3 2 1 5 5 C 1.41488 * 108.18959 * 359.97438 * 4 3 2 6 6 C 1.46774 * 126.51646 * 179.97438 * 5 4 3 7 7 O 1.21684 * 119.99619 * 214.95947 * 6 5 4 8 8 N 1.34770 * 120.00051 * 34.96013 * 6 5 4 9 9 C 1.46926 * 120.63378 * 185.11191 * 8 6 5 10 10 C 1.53189 * 108.77883 * 233.58880 * 9 8 6 11 11 C 1.53036 * 109.30887 * 305.36221 * 10 9 8 12 12 C 1.53007 * 109.46137 * 181.38598 * 11 10 9 13 13 H 1.08998 * 110.00079 * 179.00964 * 12 11 10 14 14 C 1.54314 * 109.77004 * 300.16511 * 12 11 10 15 15 C 1.55153 * 102.86197 * 141.88573 * 14 12 11 16 16 C 1.54914 * 101.58273 * 324.30170 * 15 14 12 17 17 N 1.47024 * 109.88035 * 57.91353 * 12 11 10 18 18 C 1.36931 * 125.65183 * 61.68057 * 17 12 11 19 19 H 1.08005 * 119.99853 * 14.11654 * 18 17 12 20 20 C 1.38806 * 120.00342 * 194.39178 * 18 17 12 21 21 N 1.31622 * 119.99847 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00168 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47369 * 90.00048 * 22 20 18 24 24 H 1.48504 * 109.46874 * 210.00049 * 22 20 18 25 25 H 1.48495 * 109.46700 * 329.99779 * 22 20 18 26 26 C 1.53037 * 109.54350 * 61.36182 * 11 10 9 27 27 C 1.46927 * 120.63391 * 5.08578 * 8 6 5 28 28 C 1.34846 * 125.74419 * 180.34255 * 2 1 3 29 29 N 1.38010 * 126.45093 * 359.94901 * 28 2 1 30 30 H 1.08998 * 109.46997 * 89.96771 * 1 2 3 31 31 H 1.08992 * 109.47020 * 209.97249 * 1 2 3 32 32 H 1.08998 * 109.47017 * 329.97254 * 1 2 3 33 33 H 1.08000 * 125.90272 * 180.02562 * 4 3 2 34 34 H 1.08995 * 109.59333 * 113.79426 * 9 8 6 35 35 H 1.09010 * 109.58330 * 353.37277 * 9 8 6 36 36 H 1.08996 * 109.50219 * 185.41209 * 10 9 8 37 37 H 1.09002 * 109.50067 * 65.30893 * 10 9 8 38 38 H 1.09007 * 109.46378 * 301.35371 * 11 10 9 39 39 H 1.08993 * 110.92791 * 23.46929 * 14 12 11 40 40 H 1.09004 * 110.59155 * 260.13868 * 14 12 11 41 41 H 1.09006 * 111.00699 * 206.22920 * 15 14 12 42 42 H 1.09002 * 111.04080 * 82.39195 * 15 14 12 43 43 H 1.09004 * 110.36254 * 278.17160 * 16 15 14 44 44 H 1.08993 * 110.46043 * 155.89607 * 16 15 14 45 45 H 0.97000 * 120.00223 * 180.02562 * 21 20 18 46 46 H 1.09008 * 109.49478 * 58.58709 * 26 11 10 47 47 H 1.08998 * 109.50097 * 178.68201 * 26 11 10 48 48 H 1.09003 * 109.58836 * 246.20295 * 27 8 6 49 49 H 1.09001 * 109.58383 * 6.62659 * 27 8 6 50 50 H 0.96997 * 120.00304 * 180.18792 * 29 28 2 51 51 H 0.96995 * 119.99662 * 0.18402 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2823 1.1354 0.0000 4 6 3.5314 0.7651 -0.0006 5 6 3.5728 -0.6492 -0.0003 6 6 4.7774 -1.4878 -0.0013 7 8 4.7827 -2.5443 -0.6050 8 7 5.8775 -1.0876 0.6664 9 6 7.1253 -1.8589 0.5838 10 6 7.5978 -2.1860 2.0038 11 6 7.7120 -0.8904 2.8102 12 6 8.2168 -1.2095 4.2189 13 1 8.3182 -0.2903 4.7957 14 6 7.2320 -2.1674 4.9217 15 6 8.1746 -3.1120 5.7133 16 6 9.3770 -3.2351 4.7443 17 7 9.5142 -1.8968 4.1413 18 6 10.6615 -1.3777 3.6034 19 1 10.7312 -0.3196 3.3985 20 6 11.7328 -2.2123 3.3162 21 7 11.6458 -3.5027 3.5604 22 14 13.2982 -1.5039 2.5831 23 1 14.2213 -1.1068 3.6764 24 1 13.9528 -2.5282 1.7300 25 1 12.9648 -0.3138 1.7599 26 6 6.3389 -0.2207 2.9002 27 6 5.8522 0.1286 1.4903 28 6 2.2528 -1.0944 -0.0065 29 7 1.8308 -2.4084 -0.0134 30 1 -0.3633 0.0006 -1.0276 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8897 0.5142 33 1 4.3873 1.4237 -0.0003 34 1 7.8862 -1.2695 0.0722 35 1 6.9473 -2.7842 0.0356 36 1 8.5713 -2.6743 1.9600 37 1 6.8783 -2.8503 2.4826 38 1 8.4129 -0.2165 2.3174 39 1 6.6473 -2.7283 4.1927 40 1 6.5797 -1.6169 5.5997 41 1 7.7060 -4.0821 5.8795 42 1 8.4784 -2.6603 6.6576 43 1 9.1693 -3.9786 3.9747 44 1 10.2818 -3.4992 5.2916 45 1 12.3946 -4.0858 3.3601 46 1 5.6313 -0.9035 3.3706 47 1 6.4164 0.6898 3.4943 48 1 6.5093 0.8803 1.0527 49 1 4.8342 0.5149 1.5404 50 1 2.4822 -3.1271 -0.0150 51 1 0.8827 -2.6132 -0.0165 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004415177.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:26 Heat of formation + Delta-G solvation = 72.672382 kcal Electronic energy + Delta-G solvation = -32084.870123 eV Core-core repulsion = 28021.467405 eV Total energy + Delta-G solvation = -4063.402718 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.56080 -39.63416 -38.14024 -36.22294 -35.10140 -33.44813 -32.81337 -32.01685 -30.81392 -29.34232 -28.82139 -27.61288 -27.08548 -24.69166 -23.96373 -22.97648 -22.19457 -21.19518 -20.84707 -19.98940 -19.33424 -18.30424 -17.66502 -17.01604 -16.59667 -16.34770 -16.00004 -15.50281 -15.05594 -14.74889 -14.60530 -14.59515 -13.88656 -13.72908 -13.70089 -13.58539 -13.24910 -13.17429 -12.85475 -12.67858 -12.39674 -12.06762 -11.92566 -11.77868 -11.44688 -11.37357 -11.11257 -11.01493 -10.91469 -10.81506 -10.71303 -10.28443 -10.09732 -10.02254 -9.79857 -9.63958 -9.59303 -9.48513 -9.35508 -9.11827 -8.52224 -8.34160 -7.94197 -6.69542 -5.68687 -3.03014 1.73398 2.00571 2.19111 3.23612 3.40627 3.42228 3.48286 3.49581 3.54044 4.19255 4.53448 4.69139 4.74758 4.97387 5.01612 5.10949 5.20997 5.25995 5.31675 5.41881 5.52668 5.53801 5.58462 5.73677 5.81062 5.85020 5.90121 5.98896 6.01871 6.07202 6.14219 6.29040 6.31372 6.38618 6.41362 6.46171 6.61629 6.66715 6.69138 6.75957 6.85115 7.01883 7.10097 7.16238 7.17052 7.26779 7.60419 7.61476 7.69747 7.77143 7.86647 8.35375 8.50634 9.26852 9.88520 10.58476 11.43459 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017756 B = 0.002752 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.526196 B =10172.955940 C =10566.501930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.402 5.402 3 N -0.308 5.308 4 C 0.111 3.889 5 C -0.362 4.362 6 C 0.601 3.399 7 O -0.568 6.568 8 N -0.600 5.600 9 C 0.113 3.887 10 C -0.115 4.115 11 C -0.091 4.091 12 C 0.167 3.833 13 H 0.030 0.970 14 C -0.127 4.127 15 C -0.151 4.151 16 C 0.175 3.825 17 N -0.592 5.592 18 C -0.222 4.222 19 H 0.072 0.928 20 C -0.005 4.005 21 N -0.917 5.917 22 Si 0.905 3.095 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.281 1.281 26 C -0.128 4.128 27 C 0.102 3.898 28 C 0.425 3.575 29 N -0.834 5.834 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.191 0.809 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.024 0.976 44 H 0.067 0.933 45 H 0.251 0.749 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.065 0.935 49 H 0.087 0.913 50 H 0.428 0.572 51 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.570 5.496 -4.211 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.190 5.190 3 N -0.127 5.127 4 C -0.078 4.078 5 C -0.382 4.382 6 C 0.391 3.609 7 O -0.448 6.448 8 N -0.332 5.332 9 C -0.009 4.009 10 C -0.153 4.153 11 C -0.112 4.112 12 C 0.059 3.941 13 H 0.047 0.953 14 C -0.165 4.165 15 C -0.189 4.189 16 C 0.050 3.950 17 N -0.316 5.316 18 C -0.350 4.350 19 H 0.090 0.910 20 C -0.201 4.201 21 N -0.564 5.564 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.167 4.167 27 C -0.021 4.021 28 C 0.192 3.808 29 N -0.383 5.383 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.208 0.792 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.042 0.958 44 H 0.085 0.915 45 H 0.062 0.938 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.106 0.894 50 H 0.263 0.737 51 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -23.243 5.897 -4.589 24.414 hybrid contribution 1.226 -0.623 -0.379 1.426 sum -22.017 5.274 -4.968 23.178 Atomic orbital electron populations 1.21781 0.74383 1.04434 1.03278 1.48125 1.06300 1.02361 1.62250 1.77133 1.01722 1.05283 1.28596 1.23875 0.95100 0.93415 0.95382 1.19276 0.90937 0.93853 1.34116 1.17028 0.81707 0.84283 0.77847 1.90716 1.83585 1.24606 1.45910 1.47901 1.11425 1.26811 1.47045 1.21714 0.83973 0.96371 0.98813 1.21844 1.02709 0.97837 0.92902 1.21557 0.94284 0.96520 0.98859 1.20924 0.86503 0.94211 0.92429 0.95256 1.22648 0.97260 0.97979 0.98588 1.23015 0.98874 0.97935 0.99122 1.21388 0.94083 0.87088 0.92470 1.44471 1.04318 1.13961 1.68884 1.18918 0.90255 0.92005 1.33860 0.90980 1.24849 0.98810 0.95349 1.01119 1.69935 1.30974 1.02483 1.53047 0.86224 0.83584 0.77787 0.78811 1.21793 1.21782 1.20695 1.21988 0.98387 1.00918 0.95415 1.22024 1.02011 0.86602 0.91477 1.17960 0.89423 0.81858 0.91603 1.41583 1.11018 1.02611 1.83043 0.90854 0.90194 0.88735 0.79249 0.91835 0.89646 0.88670 0.92638 0.91385 0.91557 0.92953 0.92778 0.92664 0.95773 0.91492 0.93821 0.91910 0.91365 0.91661 0.89449 0.73740 0.77191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.53 11.24 59.85 0.67 1.20 16 2 N -0.40 -4.00 4.00 -66.82 -0.27 -4.27 16 3 N -0.31 -3.64 12.47 30.88 0.39 -3.25 16 4 C 0.11 1.29 9.56 -16.97 -0.16 1.12 16 5 C -0.36 -4.74 5.41 -104.81 -0.57 -5.31 16 6 C 0.60 9.28 7.52 -12.81 -0.10 9.19 16 7 O -0.57 -10.24 15.39 5.20 0.08 -10.16 16 8 N -0.60 -8.82 2.97 -174.28 -0.52 -9.33 16 9 C 0.11 1.86 6.44 -3.71 -0.02 1.84 16 10 C -0.12 -2.08 4.93 -26.62 -0.13 -2.21 16 11 C -0.09 -1.58 1.91 -90.58 -0.17 -1.75 16 12 C 0.17 3.26 2.96 -66.95 -0.20 3.06 16 13 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 14 C -0.13 -2.20 5.20 -24.90 -0.13 -2.33 16 15 C -0.15 -2.85 7.08 -24.58 -0.17 -3.03 16 16 C 0.17 4.14 5.42 -2.53 -0.01 4.12 16 17 N -0.59 -14.23 2.28 -162.57 -0.37 -14.60 16 18 C -0.22 -5.88 9.85 -15.06 -0.15 -6.03 16 19 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 20 C 0.00 -0.13 5.47 -17.43 -0.10 -0.22 16 21 N -0.92 -26.32 10.58 55.49 0.59 -25.74 16 22 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C -0.13 -1.75 5.10 -26.62 -0.14 -1.89 16 27 C 0.10 1.26 5.33 -3.71 -0.02 1.24 16 28 C 0.43 4.73 7.98 -153.78 -1.23 3.51 16 29 N -0.83 -7.00 9.03 31.40 0.28 -6.71 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.22 7.47 -51.93 -0.39 -0.17 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.19 1.74 6.88 -52.49 -0.36 1.38 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.09 1.50 7.00 -51.92 -0.36 1.13 16 36 H 0.09 2.11 7.53 -51.93 -0.39 1.72 16 37 H 0.06 1.02 6.12 -51.93 -0.32 0.70 16 38 H 0.07 1.29 8.04 -51.93 -0.42 0.87 16 39 H 0.07 1.14 5.51 -51.93 -0.29 0.85 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.02 0.62 8.06 -51.93 -0.42 0.20 16 44 H 0.07 1.79 6.93 -51.93 -0.36 1.43 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.06 0.88 7.11 -51.92 -0.37 0.51 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 48 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.09 0.96 4.42 -51.93 -0.23 0.73 16 50 H 0.43 4.15 7.76 -40.82 -0.32 3.83 16 51 H 0.40 1.92 8.05 -40.82 -0.33 1.59 16 LS Contribution 389.25 15.07 5.87 5.87 Total: -1.00 -33.11 389.25 -9.50 -42.61 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.90 Total: 6.28 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -2.62 Total: 2.52 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: 0.10 Total: -63.90 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.16 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.11 -9.50 -42.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004415177.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.279 kcal (2) G-P(sol) polarization free energy of solvation -33.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds