Wall clock time and date at job start Wed Apr 1 2020 05:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.39895 * 125.74381 * 2 1 4 4 C 1.30292 * 109.22843 * 180.02562 * 3 2 1 5 5 C 1.41488 * 108.18959 * 359.97438 * 4 3 2 6 6 C 1.46774 * 126.51646 * 179.97438 * 5 4 3 7 7 O 1.21684 * 119.99619 * 214.95947 * 6 5 4 8 8 N 1.34770 * 120.00051 * 34.96013 * 6 5 4 9 9 C 1.46926 * 120.63378 * 185.11191 * 8 6 5 10 10 C 1.53189 * 108.77883 * 233.58880 * 9 8 6 11 11 C 1.53036 * 109.30887 * 305.36221 * 10 9 8 12 12 C 1.53007 * 109.46137 * 181.38598 * 11 10 9 13 13 H 1.08998 * 110.00079 * 179.00964 * 12 11 10 14 14 C 1.54314 * 109.77004 * 300.16511 * 12 11 10 15 15 C 1.55153 * 102.86197 * 141.88573 * 14 12 11 16 16 C 1.54914 * 101.58273 * 324.30170 * 15 14 12 17 17 N 1.47024 * 109.88035 * 57.91353 * 12 11 10 18 18 C 1.36931 * 125.65183 * 61.68057 * 17 12 11 19 19 H 1.08005 * 119.99853 * 14.11654 * 18 17 12 20 20 C 1.38806 * 120.00342 * 194.39178 * 18 17 12 21 21 N 1.31622 * 119.99847 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00168 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47369 * 90.00048 * 22 20 18 24 24 H 1.48504 * 109.46874 * 210.00049 * 22 20 18 25 25 H 1.48495 * 109.46700 * 329.99779 * 22 20 18 26 26 C 1.53037 * 109.54350 * 61.36182 * 11 10 9 27 27 C 1.46927 * 120.63391 * 5.08578 * 8 6 5 28 28 C 1.34846 * 125.74419 * 180.34255 * 2 1 3 29 29 N 1.38010 * 126.45093 * 359.94901 * 28 2 1 30 30 H 1.08998 * 109.46997 * 89.96771 * 1 2 3 31 31 H 1.08992 * 109.47020 * 209.97249 * 1 2 3 32 32 H 1.08998 * 109.47017 * 329.97254 * 1 2 3 33 33 H 1.08000 * 125.90272 * 180.02562 * 4 3 2 34 34 H 1.08995 * 109.59333 * 113.79426 * 9 8 6 35 35 H 1.09010 * 109.58330 * 353.37277 * 9 8 6 36 36 H 1.08996 * 109.50219 * 185.41209 * 10 9 8 37 37 H 1.09002 * 109.50067 * 65.30893 * 10 9 8 38 38 H 1.09007 * 109.46378 * 301.35371 * 11 10 9 39 39 H 1.08993 * 110.92791 * 23.46929 * 14 12 11 40 40 H 1.09004 * 110.59155 * 260.13868 * 14 12 11 41 41 H 1.09006 * 111.00699 * 206.22920 * 15 14 12 42 42 H 1.09002 * 111.04080 * 82.39195 * 15 14 12 43 43 H 1.09004 * 110.36254 * 278.17160 * 16 15 14 44 44 H 1.08993 * 110.46043 * 155.89607 * 16 15 14 45 45 H 0.97000 * 120.00223 * 180.02562 * 21 20 18 46 46 H 1.09008 * 109.49478 * 58.58709 * 26 11 10 47 47 H 1.08998 * 109.50097 * 178.68201 * 26 11 10 48 48 H 1.09003 * 109.58836 * 246.20295 * 27 8 6 49 49 H 1.09001 * 109.58383 * 6.62659 * 27 8 6 50 50 H 0.96997 * 120.00304 * 180.18792 * 29 28 2 51 51 H 0.96995 * 119.99662 * 0.18402 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2823 1.1354 0.0000 4 6 3.5314 0.7651 -0.0006 5 6 3.5728 -0.6492 -0.0003 6 6 4.7774 -1.4878 -0.0013 7 8 4.7827 -2.5443 -0.6050 8 7 5.8775 -1.0876 0.6664 9 6 7.1253 -1.8589 0.5838 10 6 7.5978 -2.1860 2.0038 11 6 7.7120 -0.8904 2.8102 12 6 8.2168 -1.2095 4.2189 13 1 8.3182 -0.2903 4.7957 14 6 7.2320 -2.1674 4.9217 15 6 8.1746 -3.1120 5.7133 16 6 9.3770 -3.2351 4.7443 17 7 9.5142 -1.8968 4.1413 18 6 10.6615 -1.3777 3.6034 19 1 10.7312 -0.3196 3.3985 20 6 11.7328 -2.2123 3.3162 21 7 11.6458 -3.5027 3.5604 22 14 13.2982 -1.5039 2.5831 23 1 14.2213 -1.1068 3.6764 24 1 13.9528 -2.5282 1.7300 25 1 12.9648 -0.3138 1.7599 26 6 6.3389 -0.2207 2.9002 27 6 5.8522 0.1286 1.4903 28 6 2.2528 -1.0944 -0.0065 29 7 1.8308 -2.4084 -0.0134 30 1 -0.3633 0.0006 -1.0276 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8897 0.5142 33 1 4.3873 1.4237 -0.0003 34 1 7.8862 -1.2695 0.0722 35 1 6.9473 -2.7842 0.0356 36 1 8.5713 -2.6743 1.9600 37 1 6.8783 -2.8503 2.4826 38 1 8.4129 -0.2165 2.3174 39 1 6.6473 -2.7283 4.1927 40 1 6.5797 -1.6169 5.5997 41 1 7.7060 -4.0821 5.8795 42 1 8.4784 -2.6603 6.6576 43 1 9.1693 -3.9786 3.9747 44 1 10.2818 -3.4992 5.2916 45 1 12.3946 -4.0858 3.3601 46 1 5.6313 -0.9035 3.3706 47 1 6.4164 0.6898 3.4943 48 1 6.5093 0.8803 1.0527 49 1 4.8342 0.5149 1.5404 50 1 2.4822 -3.1271 -0.0150 51 1 0.8827 -2.6132 -0.0165 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004415177.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:25 Heat of formation + Delta-G solvation = 51.690115 kcal Electronic energy + Delta-G solvation = -32085.779982 eV Core-core repulsion = 28021.467405 eV Total energy + Delta-G solvation = -4064.312577 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.40093 -40.88309 -39.58893 -37.59271 -35.89052 -34.67105 -34.15568 -33.47162 -32.02779 -31.17837 -29.81558 -28.91191 -27.85716 -26.51261 -25.40302 -24.18776 -23.30582 -22.33037 -21.89345 -21.64897 -20.53294 -19.62096 -18.59078 -18.45365 -17.92005 -17.30589 -16.91484 -16.73988 -16.50497 -16.32748 -15.80645 -15.69525 -15.48120 -15.17896 -14.84925 -14.58766 -14.28196 -14.06254 -13.88852 -13.80605 -13.62016 -13.47611 -13.41617 -13.22988 -12.93905 -12.77028 -12.72504 -12.54135 -12.22691 -12.08028 -11.99450 -11.90361 -11.78845 -11.68554 -11.45704 -11.18507 -11.14145 -10.87417 -10.71871 -10.57925 -9.90175 -9.54386 -8.81151 -8.67540 -7.78107 -5.12215 0.89329 1.27615 1.32695 1.47832 1.48611 1.56806 2.12340 2.44622 2.54711 2.77392 3.40934 3.54147 3.71449 3.89012 3.97867 4.06973 4.13308 4.17913 4.27981 4.31347 4.33736 4.40833 4.41942 4.45875 4.53152 4.56918 4.64859 4.69941 4.75773 4.84144 4.91285 4.92682 4.97796 5.12249 5.14169 5.22063 5.25881 5.31654 5.37054 5.39861 5.57375 5.59541 5.68066 5.71882 5.72967 5.81213 5.85589 6.23408 6.33610 6.52297 6.60913 6.89575 7.19744 7.34410 7.89776 8.57943 9.33425 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017756 B = 0.002752 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.526196 B =10172.955940 C =10566.501930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.399 5.399 3 N -0.323 5.323 4 C 0.113 3.887 5 C -0.391 4.391 6 C 0.599 3.401 7 O -0.603 6.603 8 N -0.599 5.599 9 C 0.122 3.878 10 C -0.100 4.100 11 C -0.082 4.082 12 C 0.158 3.842 13 H 0.034 0.966 14 C -0.114 4.114 15 C -0.139 4.139 16 C 0.180 3.820 17 N -0.608 5.608 18 C -0.219 4.219 19 H 0.076 0.924 20 C -0.063 4.063 21 N -0.949 5.949 22 Si 0.964 3.036 23 H -0.290 1.290 24 H -0.301 1.301 25 H -0.269 1.269 26 C -0.118 4.118 27 C 0.103 3.897 28 C 0.426 3.574 29 N -0.821 5.821 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.209 0.791 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.046 0.954 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.062 0.938 43 H -0.008 1.008 44 H 0.027 0.973 45 H 0.243 0.757 46 H 0.065 0.935 47 H 0.092 0.908 48 H 0.080 0.920 49 H 0.109 0.891 50 H 0.423 0.577 51 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.753 7.738 -3.818 27.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.187 5.187 3 N -0.142 5.142 4 C -0.076 4.076 5 C -0.410 4.410 6 C 0.391 3.609 7 O -0.486 6.486 8 N -0.330 5.330 9 C -0.001 4.001 10 C -0.138 4.138 11 C -0.103 4.103 12 C 0.052 3.948 13 H 0.052 0.948 14 C -0.151 4.151 15 C -0.177 4.177 16 C 0.055 3.945 17 N -0.332 5.332 18 C -0.349 4.349 19 H 0.094 0.906 20 C -0.256 4.256 21 N -0.598 5.598 22 Si 0.794 3.206 23 H -0.217 1.217 24 H -0.228 1.228 25 H -0.193 1.193 26 C -0.157 4.157 27 C -0.019 4.019 28 C 0.189 3.811 29 N -0.371 5.371 30 H 0.104 0.896 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.225 0.775 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.010 0.990 44 H 0.046 0.954 45 H 0.052 0.948 46 H 0.084 0.916 47 H 0.110 0.890 48 H 0.098 0.902 49 H 0.127 0.873 50 H 0.257 0.743 51 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -26.504 8.193 -4.181 28.055 hybrid contribution 2.110 -1.333 -0.503 2.546 sum -24.394 6.860 -4.685 25.769 Atomic orbital electron populations 1.22197 0.71756 1.06222 1.04716 1.48415 1.07628 1.01371 1.61325 1.77078 1.01971 1.06398 1.28784 1.24124 0.95695 0.92901 0.94913 1.19180 0.90686 0.94411 1.36759 1.17403 0.82290 0.84044 0.77160 1.90691 1.84202 1.26334 1.47394 1.47899 1.10473 1.27236 1.47405 1.21418 0.85119 0.96168 0.97350 1.21599 0.99864 0.98043 0.94295 1.21402 0.96364 0.95721 0.96809 1.21186 0.85118 0.94470 0.94049 0.94819 1.22605 0.96665 0.97194 0.98669 1.22890 0.96974 0.99740 0.98145 1.21132 0.94575 0.86551 0.92239 1.44690 1.05644 1.14199 1.68699 1.19222 0.91123 0.92174 1.32362 0.90614 1.25560 1.01806 0.95726 1.02529 1.70147 1.31266 1.03591 1.54799 0.85277 0.80227 0.77154 0.77940 1.21708 1.22750 1.19347 1.21914 0.95472 1.01527 0.96756 1.22197 1.03648 0.85775 0.90241 1.18049 0.89305 0.82905 0.90801 1.41577 1.12045 1.01541 1.81902 0.89578 0.87559 0.87919 0.77487 0.91917 0.91250 0.93575 0.92930 0.93140 0.91363 0.89412 0.90732 0.91911 0.99027 0.95445 0.94796 0.91601 0.89002 0.90190 0.87269 0.74331 0.75129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 11.24 127.77 1.44 2.07 16 2 N -0.40 -6.80 4.00 -365.32 -1.46 -8.25 16 3 N -0.32 -6.76 12.47 -56.22 -0.70 -7.46 16 4 C 0.11 2.32 9.56 85.72 0.82 3.14 16 5 C -0.39 -9.50 5.41 -19.99 -0.11 -9.61 16 6 C 0.60 17.99 7.52 86.48 0.65 18.64 16 7 O -0.60 -21.88 15.39 -4.30 -0.07 -21.95 16 8 N -0.60 -16.99 2.97 -823.51 -2.45 -19.43 16 9 C 0.12 4.12 6.44 86.36 0.56 4.67 16 10 C -0.10 -3.70 4.93 30.67 0.15 -3.55 16 11 C -0.08 -2.77 1.91 -10.77 -0.02 -2.79 16 12 C 0.16 5.99 2.96 45.34 0.13 6.12 16 13 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 14 C -0.11 -3.67 5.20 31.78 0.17 -3.50 16 15 C -0.14 -5.11 7.08 31.99 0.23 -4.88 16 16 C 0.18 8.88 5.42 86.86 0.47 9.35 16 17 N -0.61 -29.85 2.28 -668.26 -1.52 -31.37 16 18 C -0.22 -11.91 9.85 84.03 0.83 -11.08 16 19 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 20 C -0.06 -3.58 5.47 84.86 0.46 -3.11 16 21 N -0.95 -57.34 10.58 21.65 0.23 -57.11 16 22 Si 0.96 46.12 29.55 68.60 2.03 48.15 16 23 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 24 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 26 C -0.12 -2.86 5.10 30.67 0.16 -2.71 16 27 C 0.10 2.27 5.33 86.36 0.46 2.73 16 28 C 0.43 8.51 7.98 132.69 1.06 9.56 16 29 N -0.82 -12.05 9.03 -54.57 -0.49 -12.54 16 30 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.11 0.17 7.47 -2.39 -0.02 0.15 16 32 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.21 3.20 6.88 -2.91 -0.02 3.18 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.07 2.55 7.00 -2.38 -0.02 2.53 16 36 H 0.05 2.17 7.53 -2.39 -0.02 2.15 16 37 H 0.05 1.95 6.12 -2.39 -0.01 1.94 16 38 H 0.05 1.88 8.04 -2.38 -0.02 1.86 16 39 H 0.07 2.20 5.51 -2.39 -0.01 2.19 16 40 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 41 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 42 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 43 H -0.01 -0.45 8.06 -2.38 -0.02 -0.47 16 44 H 0.03 1.54 6.93 -2.39 -0.02 1.52 16 45 H 0.24 14.46 8.31 -92.71 -0.77 13.69 16 46 H 0.07 1.60 7.11 -2.38 -0.02 1.59 16 47 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 49 H 0.11 2.01 4.42 -2.39 -0.01 2.00 16 50 H 0.42 7.66 7.76 -92.71 -0.72 6.94 16 51 H 0.42 2.84 8.05 -92.71 -0.75 2.10 16 Total: -1.00 -75.94 389.25 2.52 -73.42 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -0.50 Total: 21.48 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 7.45 Total: 15.07 kcal Atomic # 7 Polarization: -129.78 SS G_CDS: -6.39 Total: -136.17 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.07 Total: -21.95 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -75.94 2.52 -73.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004415177.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.112 kcal (2) G-P(sol) polarization free energy of solvation -75.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds