Wall clock time and date at job start Wed Apr 1 2020 05:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46505 * 109.47414 * 2 1 4 4 N 1.28517 * 124.44192 * 90.01962 * 3 2 1 5 5 C 1.31133 * 109.05560 * 179.97438 * 4 3 2 6 6 C 1.40923 * 105.77953 * 0.02562 * 5 4 3 7 7 C 1.47797 * 127.24171 * 179.97438 * 6 5 4 8 8 O 1.21558 * 119.99857 * 6.50019 * 7 6 5 9 9 N 1.34777 * 120.00419 * 186.50095 * 7 6 5 10 10 C 1.46920 * 120.62876 * 5.87009 * 9 7 6 11 11 C 1.53631 * 108.54198 * 126.37083 * 10 9 7 12 12 C 1.53038 * 109.23965 * 54.86018 * 11 10 9 13 13 C 1.52996 * 109.44502 * 178.50132 * 12 11 10 14 14 H 1.09005 * 109.87144 * 178.27683 * 13 12 11 15 15 C 1.54326 * 109.88749 * 57.10402 * 13 12 11 16 16 C 1.55158 * 102.93955 * 218.39039 * 15 13 12 17 17 C 1.54904 * 101.58522 * 35.50119 * 16 15 13 18 18 N 1.47023 * 109.88366 * 299.29084 * 13 12 11 19 19 C 1.36934 * 125.64764 * 298.39896 * 18 13 12 20 20 H 1.08001 * 120.00606 * 344.70586 * 19 18 13 21 21 C 1.38818 * 120.00007 * 164.70459 * 19 18 13 22 22 N 1.31615 * 120.00000 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00018 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47403 * 59.99497 * 23 21 19 25 25 H 1.48503 * 109.47020 * 179.97438 * 23 21 19 26 26 H 1.48509 * 109.46977 * 299.99642 * 23 21 19 27 27 C 1.53042 * 109.53565 * 298.50674 * 12 11 10 28 28 C 1.46921 * 120.63257 * 186.15572 * 9 7 6 29 29 N 1.28585 * 124.44165 * 270.00191 * 3 2 1 30 30 H 1.09001 * 109.47054 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47292 * 300.00100 * 1 2 3 32 32 H 1.09007 * 109.47373 * 59.99787 * 1 2 3 33 33 H 1.08994 * 109.47212 * 239.99824 * 2 1 3 34 34 H 1.08999 * 109.47145 * 119.99632 * 2 1 3 35 35 H 1.08003 * 127.11519 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.59384 * 246.20588 * 10 9 7 37 37 H 1.08998 * 109.58921 * 6.63180 * 10 9 7 38 38 H 1.09001 * 109.63300 * 294.86346 * 11 10 9 39 39 H 1.09000 * 109.45644 * 174.74319 * 11 10 9 40 40 H 1.08993 * 109.46321 * 58.53168 * 12 11 10 41 41 H 1.08998 * 110.71502 * 336.74798 * 15 13 12 42 42 H 1.08997 * 110.72264 * 100.02783 * 15 13 12 43 43 H 1.09004 * 111.00306 * 277.41922 * 16 15 13 44 44 H 1.08997 * 111.00245 * 153.57644 * 16 15 13 45 45 H 1.09003 * 110.36871 * 204.15467 * 17 16 15 46 46 H 1.09000 * 110.46450 * 81.87409 * 17 16 15 47 47 H 0.96993 * 120.00352 * 180.02562 * 22 21 19 48 48 H 1.08996 * 109.50353 * 301.42133 * 27 12 11 49 49 H 1.09004 * 109.49546 * 181.31719 * 27 12 11 50 50 H 1.08999 * 109.58686 * 353.37085 * 28 9 7 51 51 H 1.09007 * 109.58874 * 113.79721 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2610 2.0664 1.0599 5 6 2.6829 3.2582 0.7119 6 6 2.6855 3.2676 -0.6972 7 6 3.0794 4.3828 -1.5836 8 8 3.5633 5.3929 -1.1111 9 7 2.9021 4.2799 -2.9157 10 6 2.2029 3.1227 -3.4906 11 6 1.0614 3.6350 -4.3820 12 6 1.6291 4.6053 -5.4205 13 6 0.5020 5.0897 -6.3347 14 1 0.8933 5.8050 -7.0581 15 6 -0.6117 5.7465 -5.4921 16 6 -1.9081 5.2787 -6.2048 17 6 -1.5183 3.8477 -6.6518 18 7 -0.0987 3.9462 -7.0369 19 6 0.5528 3.1106 -7.9042 20 1 1.5101 3.3971 -8.3140 21 6 -0.0171 1.8949 -8.2570 22 7 -1.1835 1.5453 -7.7573 23 14 0.8719 0.7547 -9.4396 24 1 2.1910 0.3804 -8.8692 25 1 0.0593 -0.4701 -9.6515 26 1 1.0726 1.4469 -10.7381 27 6 2.2597 5.8047 -4.7092 28 6 3.4098 5.3197 -3.8210 29 7 2.2608 2.0669 -1.0604 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.9686 4.0661 1.3694 36 1 2.8998 2.5338 -4.0870 37 1 1.7943 2.5074 -2.6890 38 1 0.3211 4.1497 -3.7695 39 1 0.5913 2.7928 -4.8898 40 1 2.3870 4.0969 -6.0164 41 1 -0.5835 5.3827 -4.4650 42 1 -0.5268 6.8328 -5.5202 43 1 -2.1305 5.9099 -7.0651 44 1 -2.7487 5.2560 -5.5113 45 1 -2.1222 3.5391 -7.5051 46 1 -1.6400 3.1446 -5.8278 47 1 -1.5816 0.6958 -8.0034 48 1 1.5082 6.2990 -4.0935 49 1 2.6431 6.5066 -5.4499 50 1 3.7979 6.1546 -3.2375 51 1 4.2032 4.9064 -4.4438 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004429050.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:45 Heat of formation + Delta-G solvation = 108.098242 kcal Electronic energy + Delta-G solvation = -32313.540425 eV Core-core repulsion = 28251.673887 eV Total energy + Delta-G solvation = -4061.866537 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.81001 -39.97776 -38.33753 -36.29739 -35.09109 -33.39283 -32.65527 -32.01313 -30.93233 -30.30149 -29.32902 -27.70634 -25.52085 -24.63600 -24.20190 -23.35370 -22.74984 -21.64890 -21.15408 -20.13776 -19.55761 -18.30021 -17.62061 -17.01054 -16.76317 -16.46162 -15.90581 -15.25058 -15.04977 -14.90732 -14.66847 -14.44908 -13.96669 -13.90348 -13.78765 -13.27284 -13.10582 -12.93382 -12.66890 -12.52123 -12.12244 -12.10133 -11.98721 -11.81475 -11.74846 -11.48007 -11.25348 -11.02925 -10.94484 -10.81610 -10.72502 -10.57843 -10.28025 -10.14493 -10.05552 -9.93957 -9.79826 -9.61073 -9.59275 -9.54416 -9.34024 -8.56665 -8.43431 -6.73147 -5.73438 -3.07701 1.20813 1.83431 1.94719 3.04464 3.25238 3.38514 3.43925 3.44151 3.77960 4.43079 4.48446 4.49310 4.69866 4.76067 4.87910 5.13553 5.17907 5.23788 5.33693 5.36241 5.47481 5.47874 5.51766 5.54616 5.64979 5.72401 5.74945 5.76447 5.81030 5.89753 5.95423 6.00324 6.09456 6.24110 6.27230 6.34860 6.43086 6.48465 6.53247 6.63156 6.67263 6.74711 6.81137 6.99678 7.10223 7.20171 7.47462 7.56734 7.65494 7.81883 7.96756 8.18708 8.31194 9.22559 9.84141 10.54645 11.38855 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009954 B = 0.003638 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.230506 B = 7694.867424 C = 8913.706105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.131 3.869 3 N -0.143 5.143 4 N -0.291 5.291 5 C 0.031 3.969 6 C -0.041 4.041 7 C 0.605 3.395 8 O -0.541 6.541 9 N -0.589 5.589 10 C 0.085 3.915 11 C -0.115 4.115 12 C -0.093 4.093 13 C 0.167 3.833 14 H 0.031 0.969 15 C -0.128 4.128 16 C -0.150 4.150 17 C 0.176 3.824 18 N -0.592 5.592 19 C -0.223 4.223 20 H 0.071 0.929 21 C -0.003 4.003 22 N -0.918 5.918 23 Si 0.905 3.095 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.128 4.128 28 C 0.114 3.886 29 N -0.242 5.242 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.206 0.794 36 H 0.066 0.934 37 H 0.116 0.884 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.024 0.976 47 H 0.252 0.748 48 H 0.064 0.936 49 H 0.070 0.930 50 H 0.088 0.912 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.384 0.459 15.028 15.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.012 3.988 3 N -0.046 5.046 4 N -0.130 5.130 5 C -0.152 4.152 6 C -0.203 4.203 7 C 0.390 3.610 8 O -0.417 6.417 9 N -0.320 5.320 10 C -0.038 4.038 11 C -0.153 4.153 12 C -0.114 4.114 13 C 0.059 3.941 14 H 0.048 0.952 15 C -0.166 4.166 16 C -0.189 4.189 17 C 0.051 3.949 18 N -0.316 5.316 19 C -0.352 4.352 20 H 0.089 0.911 21 C -0.199 4.199 22 N -0.564 5.564 23 Si 0.735 3.265 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.167 4.167 28 C -0.008 4.008 29 N -0.089 5.089 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.223 0.777 36 H 0.084 0.916 37 H 0.134 0.866 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.042 0.958 47 H 0.062 0.938 48 H 0.083 0.917 49 H 0.089 0.911 50 H 0.107 0.893 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.135 -0.529 15.155 15.717 hybrid contribution 0.728 0.039 -0.726 1.029 sum 4.862 -0.490 14.429 15.234 Atomic orbital electron populations 1.22204 0.92649 1.04254 1.04009 1.22141 0.96460 0.74077 1.06131 1.48496 1.43252 1.13487 0.99344 1.73972 1.17658 1.05575 1.15828 1.24783 1.01631 0.95227 0.93597 1.23122 1.08839 0.93597 0.94739 1.16749 0.78484 0.84383 0.81377 1.90769 1.46310 1.29607 1.75026 1.48011 1.55353 1.23802 1.04851 1.22676 0.94886 0.87002 0.99187 1.21946 0.96165 1.00893 0.96286 1.21584 0.98877 0.94683 0.96244 1.20929 0.91544 0.90249 0.91354 0.95178 1.22673 0.96138 0.98571 0.99246 1.23010 0.96135 1.00766 0.99009 1.21365 0.85505 0.89517 0.98533 1.44477 1.06037 1.31602 1.49523 1.18883 1.02648 0.95998 1.17631 0.91071 1.24841 0.97532 0.97080 1.00485 1.69922 1.16895 1.22621 1.47011 0.86321 0.78810 0.80498 0.80851 1.21207 1.21720 1.21256 1.21992 0.97452 0.98825 0.98410 1.21692 0.96476 0.90905 0.91745 1.74411 1.15132 1.04754 1.14634 0.89316 0.91417 0.90870 0.86909 0.87173 0.77703 0.91565 0.86650 0.92624 0.88724 0.91224 0.91542 0.92806 0.92604 0.92755 0.91633 0.95789 0.93788 0.91738 0.91107 0.89333 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.24 37.15 0.38 -0.83 16 2 C 0.13 0.96 7.24 -4.04 -0.03 0.94 16 3 N -0.14 -1.65 3.94 -10.62 -0.04 -1.69 16 4 N -0.29 -3.52 12.01 30.90 0.37 -3.15 16 5 C 0.03 0.38 12.05 -16.83 -0.20 0.18 16 6 C -0.04 -0.58 6.89 -82.68 -0.57 -1.15 16 7 C 0.60 9.45 7.70 -12.35 -0.10 9.36 16 8 O -0.54 -9.37 16.38 5.31 0.09 -9.28 16 9 N -0.59 -8.88 2.97 -173.63 -0.51 -9.39 16 10 C 0.09 1.32 6.18 -3.49 -0.02 1.30 16 11 C -0.11 -2.00 4.93 -26.38 -0.13 -2.13 16 12 C -0.09 -1.61 1.93 -90.58 -0.17 -1.79 16 13 C 0.17 3.25 2.92 -66.95 -0.20 3.05 16 14 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 15 C -0.13 -2.22 5.27 -24.90 -0.13 -2.35 16 16 C -0.15 -2.82 7.08 -24.58 -0.17 -2.99 16 17 C 0.18 4.09 5.40 -2.53 -0.01 4.08 16 18 N -0.59 -14.08 2.39 -162.57 -0.39 -14.47 16 19 C -0.22 -5.85 9.79 -15.06 -0.15 -6.00 16 20 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 21 C 0.00 -0.07 5.47 -17.43 -0.10 -0.17 16 22 N -0.92 -25.73 10.60 55.49 0.59 -25.15 16 23 Si 0.90 21.38 29.55 -169.99 -5.02 16.36 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 C -0.13 -1.84 5.14 -26.61 -0.14 -1.98 16 28 C 0.11 1.59 6.44 -3.71 -0.02 1.57 16 29 N -0.24 -3.26 8.63 33.42 0.29 -2.97 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.21 2.00 8.06 -52.48 -0.42 1.58 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.12 1.76 4.13 -69.02 -0.29 1.48 16 38 H 0.06 0.97 6.00 -51.93 -0.31 0.66 16 39 H 0.09 2.00 7.60 -51.93 -0.39 1.61 16 40 H 0.07 1.33 7.96 -51.93 -0.41 0.92 16 41 H 0.07 1.13 5.48 -51.93 -0.28 0.85 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.07 1.72 6.98 -51.93 -0.36 1.36 16 46 H 0.02 0.60 8.04 -51.93 -0.42 0.19 16 47 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 48 H 0.06 0.95 7.29 -51.93 -0.38 0.57 16 49 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.09 1.23 7.00 -51.93 -0.36 0.86 16 51 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 394.83 15.07 5.95 5.95 Total: -1.00 -31.05 394.83 -8.70 -39.75 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -8.25 Total: 2.96 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -1.76 Total: 1.09 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.30 Total: -56.83 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.05 -8.70 -39.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004429050.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.847 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds