Wall clock time and date at job start Wed Apr 1 2020 05:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46505 * 109.47414 * 2 1 4 4 N 1.28517 * 124.44192 * 90.01962 * 3 2 1 5 5 C 1.31133 * 109.05560 * 179.97438 * 4 3 2 6 6 C 1.40923 * 105.77953 * 0.02562 * 5 4 3 7 7 C 1.47797 * 127.24171 * 179.97438 * 6 5 4 8 8 O 1.21558 * 119.99857 * 6.50019 * 7 6 5 9 9 N 1.34777 * 120.00419 * 186.50095 * 7 6 5 10 10 C 1.46920 * 120.62876 * 5.87009 * 9 7 6 11 11 C 1.53631 * 108.54198 * 126.37083 * 10 9 7 12 12 C 1.53038 * 109.23965 * 54.86018 * 11 10 9 13 13 C 1.52996 * 109.44502 * 178.50132 * 12 11 10 14 14 H 1.09005 * 109.87144 * 178.27683 * 13 12 11 15 15 C 1.54326 * 109.88749 * 57.10402 * 13 12 11 16 16 C 1.55158 * 102.93955 * 218.39039 * 15 13 12 17 17 C 1.54904 * 101.58522 * 35.50119 * 16 15 13 18 18 N 1.47023 * 109.88366 * 299.29084 * 13 12 11 19 19 C 1.36934 * 125.64764 * 298.39896 * 18 13 12 20 20 H 1.08001 * 120.00606 * 344.70586 * 19 18 13 21 21 C 1.38818 * 120.00007 * 164.70459 * 19 18 13 22 22 N 1.31615 * 120.00000 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00018 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47403 * 59.99497 * 23 21 19 25 25 H 1.48503 * 109.47020 * 179.97438 * 23 21 19 26 26 H 1.48509 * 109.46977 * 299.99642 * 23 21 19 27 27 C 1.53042 * 109.53565 * 298.50674 * 12 11 10 28 28 C 1.46921 * 120.63257 * 186.15572 * 9 7 6 29 29 N 1.28585 * 124.44165 * 270.00191 * 3 2 1 30 30 H 1.09001 * 109.47054 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47292 * 300.00100 * 1 2 3 32 32 H 1.09007 * 109.47373 * 59.99787 * 1 2 3 33 33 H 1.08994 * 109.47212 * 239.99824 * 2 1 3 34 34 H 1.08999 * 109.47145 * 119.99632 * 2 1 3 35 35 H 1.08003 * 127.11519 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.59384 * 246.20588 * 10 9 7 37 37 H 1.08998 * 109.58921 * 6.63180 * 10 9 7 38 38 H 1.09001 * 109.63300 * 294.86346 * 11 10 9 39 39 H 1.09000 * 109.45644 * 174.74319 * 11 10 9 40 40 H 1.08993 * 109.46321 * 58.53168 * 12 11 10 41 41 H 1.08998 * 110.71502 * 336.74798 * 15 13 12 42 42 H 1.08997 * 110.72264 * 100.02783 * 15 13 12 43 43 H 1.09004 * 111.00306 * 277.41922 * 16 15 13 44 44 H 1.08997 * 111.00245 * 153.57644 * 16 15 13 45 45 H 1.09003 * 110.36871 * 204.15467 * 17 16 15 46 46 H 1.09000 * 110.46450 * 81.87409 * 17 16 15 47 47 H 0.96993 * 120.00352 * 180.02562 * 22 21 19 48 48 H 1.08996 * 109.50353 * 301.42133 * 27 12 11 49 49 H 1.09004 * 109.49546 * 181.31719 * 27 12 11 50 50 H 1.08999 * 109.58686 * 353.37085 * 28 9 7 51 51 H 1.09007 * 109.58874 * 113.79721 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2610 2.0664 1.0599 5 6 2.6829 3.2582 0.7119 6 6 2.6855 3.2676 -0.6972 7 6 3.0794 4.3828 -1.5836 8 8 3.5633 5.3929 -1.1111 9 7 2.9021 4.2799 -2.9157 10 6 2.2029 3.1227 -3.4906 11 6 1.0614 3.6350 -4.3820 12 6 1.6291 4.6053 -5.4205 13 6 0.5020 5.0897 -6.3347 14 1 0.8933 5.8050 -7.0581 15 6 -0.6117 5.7465 -5.4921 16 6 -1.9081 5.2787 -6.2048 17 6 -1.5183 3.8477 -6.6518 18 7 -0.0987 3.9462 -7.0369 19 6 0.5528 3.1106 -7.9042 20 1 1.5101 3.3971 -8.3140 21 6 -0.0171 1.8949 -8.2570 22 7 -1.1835 1.5453 -7.7573 23 14 0.8719 0.7547 -9.4396 24 1 2.1910 0.3804 -8.8692 25 1 0.0593 -0.4701 -9.6515 26 1 1.0726 1.4469 -10.7381 27 6 2.2597 5.8047 -4.7092 28 6 3.4098 5.3197 -3.8210 29 7 2.2608 2.0669 -1.0604 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.9686 4.0661 1.3694 36 1 2.8998 2.5338 -4.0870 37 1 1.7943 2.5074 -2.6890 38 1 0.3211 4.1497 -3.7695 39 1 0.5913 2.7928 -4.8898 40 1 2.3870 4.0969 -6.0164 41 1 -0.5835 5.3827 -4.4650 42 1 -0.5268 6.8328 -5.5202 43 1 -2.1305 5.9099 -7.0651 44 1 -2.7487 5.2560 -5.5113 45 1 -2.1222 3.5391 -7.5051 46 1 -1.6400 3.1446 -5.8278 47 1 -1.5816 0.6958 -8.0034 48 1 1.5082 6.2990 -4.0935 49 1 2.6431 6.5066 -5.4499 50 1 3.7979 6.1546 -3.2375 51 1 4.2032 4.9064 -4.4438 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004429050.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:44 Heat of formation + Delta-G solvation = 90.464400 kcal Electronic energy + Delta-G solvation = -32314.305085 eV Core-core repulsion = 28251.673887 eV Total energy + Delta-G solvation = -4062.631198 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.76200 -41.24940 -39.82023 -37.72007 -35.85424 -34.82034 -34.15069 -33.37893 -32.06292 -31.27120 -31.16997 -29.19438 -26.72042 -26.33097 -25.23686 -24.64968 -23.98593 -22.62394 -22.39850 -21.78148 -20.93403 -19.70037 -18.62024 -18.52850 -17.96260 -17.70714 -17.10952 -16.77960 -16.35087 -16.19654 -15.92057 -15.71806 -15.31473 -15.26034 -15.04670 -14.49110 -14.40895 -14.02454 -13.88577 -13.69939 -13.59246 -13.33400 -13.13804 -13.05134 -12.95457 -12.80979 -12.77706 -12.59497 -12.39709 -12.27103 -12.03588 -11.95876 -11.81356 -11.65166 -11.53255 -11.43333 -11.33639 -11.13994 -11.08198 -10.77441 -10.56835 -10.53211 -9.68966 -8.68442 -7.78967 -5.13422 0.16009 0.87449 1.14691 1.48070 1.49027 1.55088 1.91082 2.10727 2.54094 2.81970 3.39692 3.49680 3.68933 3.87160 3.89909 3.92325 3.95540 3.99736 4.18612 4.21232 4.22865 4.25915 4.29513 4.35180 4.42212 4.55125 4.55723 4.64857 4.70448 4.72862 4.80488 4.86696 4.90315 4.94243 5.00946 5.08557 5.11545 5.12081 5.14649 5.21548 5.27682 5.34431 5.54334 5.55969 5.64814 5.66159 5.72279 5.75705 5.84207 6.25458 6.32879 6.88894 7.10219 7.19247 7.88403 8.57137 9.32400 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009954 B = 0.003638 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.230506 B = 7694.867424 C = 8913.706105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.119 3.881 3 N -0.135 5.135 4 N -0.293 5.293 5 C 0.032 3.968 6 C -0.065 4.065 7 C 0.606 3.394 8 O -0.559 6.559 9 N -0.589 5.589 10 C 0.097 3.903 11 C -0.101 4.101 12 C -0.085 4.085 13 C 0.159 3.841 14 H 0.030 0.970 15 C -0.116 4.116 16 C -0.139 4.139 17 C 0.182 3.818 18 N -0.608 5.608 19 C -0.226 4.226 20 H 0.072 0.928 21 C -0.056 4.056 22 N -0.945 5.945 23 Si 0.963 3.037 24 H -0.279 1.279 25 H -0.297 1.297 26 H -0.282 1.282 27 C -0.116 4.116 28 C 0.113 3.887 29 N -0.255 5.255 30 H 0.114 0.886 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.124 0.876 34 H 0.138 0.862 35 H 0.227 0.773 36 H 0.061 0.939 37 H 0.121 0.879 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.026 0.974 46 H -0.004 1.004 47 H 0.244 0.756 48 H 0.068 0.932 49 H 0.090 0.910 50 H 0.095 0.905 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.348 1.287 16.354 17.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.001 3.999 3 N -0.039 5.039 4 N -0.133 5.133 5 C -0.151 4.151 6 C -0.225 4.225 7 C 0.392 3.608 8 O -0.437 6.437 9 N -0.321 5.321 10 C -0.026 4.026 11 C -0.139 4.139 12 C -0.105 4.105 13 C 0.053 3.947 14 H 0.048 0.952 15 C -0.154 4.154 16 C -0.177 4.177 17 C 0.057 3.943 18 N -0.332 5.332 19 C -0.355 4.355 20 H 0.090 0.910 21 C -0.249 4.249 22 N -0.594 5.594 23 Si 0.792 3.208 24 H -0.205 1.205 25 H -0.223 1.223 26 H -0.208 1.208 27 C -0.155 4.155 28 C -0.008 4.008 29 N -0.103 5.103 30 H 0.133 0.867 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.142 0.858 34 H 0.156 0.844 35 H 0.243 0.757 36 H 0.079 0.921 37 H 0.138 0.862 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.045 0.955 46 H 0.014 0.986 47 H 0.054 0.946 48 H 0.087 0.913 49 H 0.108 0.892 50 H 0.114 0.886 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.121 0.330 16.485 17.265 hybrid contribution 0.405 -0.262 -1.115 1.215 sum 5.526 0.068 15.370 16.334 Atomic orbital electron populations 1.22176 0.92326 1.05520 1.02515 1.22612 0.96696 0.72462 1.08088 1.48959 1.41938 1.14307 0.98727 1.73986 1.17777 1.05601 1.15898 1.25156 1.00971 0.95790 0.93156 1.23023 1.10478 0.93665 0.95367 1.16887 0.77973 0.84483 0.81420 1.90749 1.47245 1.30446 1.75294 1.48022 1.55225 1.23756 1.05052 1.22480 0.94079 0.87181 0.98881 1.21725 0.96645 0.99346 0.96233 1.21423 0.97617 0.95741 0.95737 1.21151 0.92928 0.88867 0.91797 0.95174 1.22634 0.93939 1.00199 0.98626 1.22891 0.97705 0.97326 0.99823 1.21117 0.85190 0.91988 0.95987 1.44677 1.06596 1.32156 1.49775 1.19158 1.02478 0.96348 1.17526 0.91001 1.25511 0.98320 0.98588 1.02501 1.70121 1.18212 1.22527 1.48555 0.85391 0.77799 0.78448 0.79133 1.20511 1.22342 1.20828 1.21889 0.97507 0.97477 0.98587 1.21774 0.96473 0.90923 0.91653 1.74298 1.15446 1.04916 1.15683 0.86707 0.91861 0.93267 0.85810 0.84433 0.75678 0.92066 0.86206 0.92549 0.92997 0.93270 0.91132 0.89655 0.92037 0.90577 0.95523 0.98569 0.94635 0.91329 0.89189 0.88649 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 71.98 0.74 -1.39 16 2 C 0.12 1.54 7.24 86.38 0.63 2.17 16 3 N -0.13 -2.94 3.94 -187.50 -0.74 -3.67 16 4 N -0.29 -6.62 12.01 -56.16 -0.67 -7.29 16 5 C 0.03 0.74 12.05 85.46 1.03 1.77 16 6 C -0.06 -1.77 6.89 42.24 0.29 -1.48 16 7 C 0.61 18.28 7.70 86.77 0.67 18.95 16 8 O -0.56 -18.62 16.38 -3.90 -0.06 -18.68 16 9 N -0.59 -17.15 2.97 -821.53 -2.44 -19.58 16 10 C 0.10 2.99 6.18 86.51 0.53 3.53 16 11 C -0.10 -3.57 4.93 30.82 0.15 -3.41 16 12 C -0.08 -2.87 1.93 -10.77 -0.02 -2.90 16 13 C 0.16 6.06 2.92 45.34 0.13 6.19 16 14 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 15 C -0.12 -3.77 5.27 31.78 0.17 -3.61 16 16 C -0.14 -5.04 7.08 31.98 0.23 -4.81 16 17 C 0.18 8.76 5.40 86.85 0.47 9.23 16 18 N -0.61 -29.46 2.39 -668.25 -1.60 -31.06 16 19 C -0.23 -12.09 9.79 84.04 0.82 -11.27 16 20 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 21 C -0.06 -3.07 5.47 84.86 0.46 -2.60 16 22 N -0.95 -55.24 10.60 21.65 0.23 -55.01 16 23 Si 0.96 44.85 29.55 68.60 2.03 46.88 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 27 C -0.12 -3.07 5.14 30.67 0.16 -2.91 16 28 C 0.11 2.95 6.44 86.36 0.56 3.51 16 29 N -0.25 -6.69 8.63 -48.17 -0.42 -7.10 16 30 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.23 4.00 8.06 -2.91 -0.02 3.98 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.12 3.67 4.13 -24.50 -0.10 3.56 16 38 H 0.06 1.96 6.00 -2.39 -0.01 1.94 16 39 H 0.05 2.29 7.60 -2.39 -0.02 2.27 16 40 H 0.05 1.88 7.96 -2.39 -0.02 1.86 16 41 H 0.07 2.25 5.48 -2.39 -0.01 2.24 16 42 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.03 1.46 6.98 -2.39 -0.02 1.44 16 46 H 0.00 -0.19 8.04 -2.39 -0.02 -0.21 16 47 H 0.24 14.06 8.31 -92.71 -0.77 13.28 16 48 H 0.07 1.80 7.29 -2.39 -0.02 1.78 16 49 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.10 2.43 7.00 -2.39 -0.02 2.41 16 51 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -69.00 394.83 4.17 -64.83 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.84 Total: 19.74 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 7.01 Total: 10.95 kcal Atomic # 7 Polarization: -118.08 SS G_CDS: -5.64 Total: -123.72 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.06 Total: -18.68 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -69.00 4.17 -64.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004429050.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.291 kcal (2) G-P(sol) polarization free energy of solvation -69.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds