Wall clock time and date at job start Wed Apr 1 2020 05:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46495 * 109.46985 * 2 1 4 4 N 1.28523 * 124.44075 * 270.31846 * 3 2 1 5 5 C 1.31140 * 109.05546 * 180.12971 * 4 3 2 6 6 C 1.40922 * 105.77436 * 359.61126 * 5 4 3 7 7 C 1.47808 * 127.23328 * 180.21324 * 6 5 4 8 8 O 1.21552 * 119.99874 * 6.70028 * 7 6 5 9 9 N 1.34776 * 119.99856 * 186.69827 * 7 6 5 10 10 C 1.46924 * 120.63137 * 5.71081 * 9 7 6 11 11 C 1.53627 * 108.54249 * 126.36751 * 10 9 7 12 12 C 1.53048 * 109.23696 * 54.86334 * 11 10 9 13 13 C 1.53002 * 109.45758 * 178.49168 * 12 11 10 14 14 H 1.09001 * 109.87137 * 301.92799 * 13 12 11 15 15 C 1.54324 * 109.88568 * 63.10384 * 13 12 11 16 16 C 1.55160 * 102.94304 * 141.60830 * 15 13 12 17 17 C 1.54911 * 101.58078 * 324.50080 * 16 15 13 18 18 N 1.47016 * 109.88028 * 180.91478 * 13 12 11 19 19 C 1.36944 * 125.65187 * 61.67627 * 18 13 12 20 20 H 1.08002 * 119.99457 * 11.34120 * 19 18 13 21 21 C 1.38811 * 120.00108 * 191.34815 * 19 18 13 22 22 N 1.31614 * 119.99883 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99711 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47357 * 89.99951 * 23 21 19 25 25 H 1.48508 * 109.46768 * 209.99693 * 23 21 19 26 26 H 1.48498 * 109.47405 * 329.99613 * 23 21 19 27 27 C 1.53041 * 109.53214 * 298.50490 * 12 11 10 28 28 C 1.46926 * 120.63231 * 185.99787 * 9 7 6 29 29 N 1.28592 * 124.44669 * 90.00234 * 3 2 1 30 30 H 1.09000 * 109.47109 * 300.00232 * 1 2 3 31 31 H 1.08999 * 109.46849 * 59.99907 * 1 2 3 32 32 H 1.09000 * 109.47000 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47109 * 239.99768 * 2 1 3 34 34 H 1.08999 * 109.46849 * 120.00093 * 2 1 3 35 35 H 1.07997 * 127.10738 * 179.86395 * 5 4 3 36 36 H 1.08997 * 109.59395 * 246.20603 * 10 9 7 37 37 H 1.09007 * 109.58699 * 6.63157 * 10 9 7 38 38 H 1.08994 * 109.63978 * 294.87113 * 11 10 9 39 39 H 1.09003 * 109.46082 * 174.73723 * 11 10 9 40 40 H 1.08992 * 109.46352 * 58.53150 * 12 11 10 41 41 H 1.08996 * 110.71972 * 259.97759 * 15 13 12 42 42 H 1.09002 * 110.71833 * 23.25037 * 15 13 12 43 43 H 1.08998 * 111.00293 * 206.42209 * 16 15 13 44 44 H 1.08999 * 111.03126 * 82.58686 * 16 15 13 45 45 H 1.09000 * 110.36624 * 278.16751 * 17 16 15 46 46 H 1.08999 * 110.46250 * 155.89422 * 17 16 15 47 47 H 0.97003 * 119.99901 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.50108 * 301.41503 * 27 12 11 49 49 H 1.09000 * 109.49312 * 181.32032 * 27 12 11 50 50 H 1.09001 * 109.58355 * 353.36616 * 28 9 7 51 51 H 1.08996 * 109.58950 * 113.79182 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2551 2.0684 -1.0599 5 6 2.6810 3.2590 -0.7120 6 6 2.6846 3.2679 0.6972 7 6 3.0791 4.3830 1.5835 8 8 3.3341 5.4736 1.1112 9 7 3.1559 4.1906 2.9152 10 6 2.9730 2.8507 3.4897 11 6 4.1852 2.5303 4.3775 12 6 4.3572 3.6410 5.4163 13 6 5.5405 3.3081 6.3272 14 1 5.3756 2.3459 6.8121 15 6 6.8435 3.2668 5.5013 16 6 7.8819 3.9101 6.4579 17 6 7.0240 4.9853 7.1705 18 7 5.7006 4.3589 7.3429 19 6 4.7743 4.6990 8.2924 20 1 3.9145 4.0669 8.4588 21 6 4.9403 5.8562 9.0409 22 7 5.9883 6.6262 8.8384 23 14 3.6771 6.3196 10.3366 24 1 4.0608 5.7188 11.6393 25 1 3.6240 7.7977 10.4697 26 1 2.3423 5.8109 9.9309 27 6 4.6195 4.9705 4.7051 28 6 3.4179 5.3177 3.8206 29 7 2.2608 2.0669 1.0604 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.9657 4.0670 -1.3696 36 1 2.0626 2.8310 4.0886 37 1 2.9013 2.1159 2.6878 38 1 5.0827 2.4652 3.7625 39 1 4.0222 1.5796 4.8852 40 1 3.4499 3.7221 6.0148 41 1 7.1194 2.2386 5.2676 42 1 6.7414 3.8564 4.5902 43 1 8.6972 4.3685 5.8983 44 1 8.2628 3.1788 7.1707 45 1 6.9432 5.8782 6.5506 46 1 7.4546 5.2353 8.1401 47 1 6.1045 7.4346 9.3617 48 1 5.5129 4.8824 4.0869 49 1 4.7652 5.7567 5.4458 50 1 3.6398 6.2111 3.2370 51 1 2.5429 5.4951 4.4459 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004429051.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:49 Heat of formation + Delta-G solvation = 109.532938 kcal Electronic energy + Delta-G solvation = -31917.497264 eV Core-core repulsion = 27855.692940 eV Total energy + Delta-G solvation = -4061.804324 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.90585 -39.98635 -38.33503 -36.32321 -35.22705 -33.37815 -32.71094 -32.01134 -31.05461 -30.35287 -29.31894 -27.67028 -25.60681 -24.66544 -24.22391 -23.51416 -22.64499 -21.78021 -21.17634 -20.13282 -19.59052 -18.28017 -17.67560 -16.99258 -16.95724 -16.56363 -15.82427 -15.30985 -15.15100 -14.89810 -14.67907 -14.54823 -13.99669 -13.86064 -13.76048 -13.36263 -13.23966 -12.96227 -12.73777 -12.59761 -12.21948 -12.07934 -12.04914 -11.92399 -11.82768 -11.44385 -11.23899 -11.03802 -10.91428 -10.83482 -10.74388 -10.57038 -10.31492 -10.18600 -10.08600 -9.93118 -9.75861 -9.67626 -9.62274 -9.44921 -9.38090 -8.56211 -8.43820 -6.73906 -5.68791 -3.03547 1.11675 1.75438 1.83289 3.02054 3.21717 3.40646 3.46398 3.47989 3.68040 4.30087 4.31165 4.51594 4.59320 4.60841 4.80485 4.98926 5.14642 5.16113 5.21598 5.31886 5.41190 5.48202 5.50586 5.52427 5.54467 5.60436 5.73825 5.77352 5.82236 5.90898 5.95840 5.96699 6.07082 6.24668 6.26582 6.34007 6.41554 6.44425 6.55585 6.61021 6.65036 6.69450 6.82532 7.02792 7.10546 7.19938 7.46096 7.62470 7.66422 7.86717 7.88141 8.16360 8.34340 9.25357 9.87071 10.55858 11.42020 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015800 B = 0.002689 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.750018 B =10408.821633 C =10577.275984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.131 3.869 3 N -0.146 5.146 4 N -0.290 5.290 5 C 0.032 3.968 6 C -0.036 4.036 7 C 0.602 3.398 8 O -0.535 6.535 9 N -0.588 5.588 10 C 0.087 3.913 11 C -0.127 4.127 12 C -0.093 4.093 13 C 0.167 3.833 14 H 0.030 0.970 15 C -0.129 4.129 16 C -0.150 4.150 17 C 0.172 3.828 18 N -0.593 5.593 19 C -0.221 4.221 20 H 0.073 0.927 21 C -0.006 4.006 22 N -0.918 5.918 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.117 4.117 28 C 0.111 3.889 29 N -0.247 5.247 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.207 0.793 36 H 0.065 0.935 37 H 0.116 0.884 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.021 0.979 46 H 0.075 0.925 47 H 0.251 0.749 48 H 0.059 0.941 49 H 0.095 0.905 50 H 0.088 0.912 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.275 -13.905 -17.698 23.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.012 3.988 3 N -0.048 5.048 4 N -0.130 5.130 5 C -0.151 4.151 6 C -0.199 4.199 7 C 0.387 3.613 8 O -0.411 6.411 9 N -0.320 5.320 10 C -0.036 4.036 11 C -0.165 4.165 12 C -0.114 4.114 13 C 0.060 3.940 14 H 0.048 0.952 15 C -0.166 4.166 16 C -0.189 4.189 17 C 0.047 3.953 18 N -0.317 5.317 19 C -0.350 4.350 20 H 0.091 0.909 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.155 4.155 28 C -0.010 4.010 29 N -0.095 5.095 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.224 0.776 36 H 0.083 0.917 37 H 0.133 0.867 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.039 0.961 46 H 0.093 0.907 47 H 0.062 0.938 48 H 0.077 0.923 49 H 0.114 0.886 50 H 0.107 0.893 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.627 -14.415 -17.768 24.118 hybrid contribution -0.442 1.064 0.787 1.395 sum -8.069 -13.351 -16.981 23.059 Atomic orbital electron populations 1.22194 0.92868 1.04079 1.03855 1.22110 0.96255 0.74227 1.06173 1.48463 1.43498 1.13445 0.99416 1.73988 1.17681 1.05575 1.15717 1.24819 1.01381 0.95223 0.93673 1.23187 1.08435 0.93423 0.94816 1.16761 0.77736 0.85409 0.81398 1.90794 1.50754 1.24641 1.74868 1.48009 1.68595 1.10448 1.04964 1.22546 0.98372 0.83621 0.99049 1.22057 0.97475 0.99409 0.97603 1.21596 1.00980 0.93446 0.95409 1.20910 0.91837 0.92540 0.88728 0.95240 1.22677 0.96170 0.99329 0.98472 1.23012 0.97454 1.00116 0.98311 1.21470 0.83922 0.90976 0.98963 1.44506 1.15168 1.39348 1.32686 1.18941 1.01882 1.03747 1.10400 0.90901 1.24808 0.98198 0.96786 1.00466 1.69929 1.28438 1.15311 1.42904 0.86206 0.80929 0.77512 0.81638 1.21781 1.21759 1.20761 1.21883 0.95895 0.99456 0.98233 1.21833 0.99111 0.88509 0.91532 1.74318 1.15855 1.04632 1.14690 0.91212 0.91358 0.89401 0.87114 0.86984 0.77618 0.91667 0.86659 0.91992 0.91314 0.91248 0.92934 0.91471 0.92720 0.92645 0.96079 0.90698 0.93810 0.92270 0.88648 0.89319 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 10.24 37.16 0.38 -0.37 16 2 C 0.13 0.68 7.24 -4.04 -0.03 0.65 16 3 N -0.15 -1.42 3.94 -10.61 -0.04 -1.46 16 4 N -0.29 -3.16 12.01 30.90 0.37 -2.79 16 5 C 0.03 0.37 12.05 -16.83 -0.20 0.17 16 6 C -0.04 -0.48 6.88 -82.68 -0.57 -1.04 16 7 C 0.60 9.31 7.70 -12.35 -0.10 9.21 16 8 O -0.53 -9.57 16.38 5.32 0.09 -9.49 16 9 N -0.59 -8.79 2.97 -173.63 -0.51 -9.31 16 10 C 0.09 1.15 6.18 -3.49 -0.02 1.12 16 11 C -0.13 -1.76 5.15 -26.38 -0.14 -1.89 16 12 C -0.09 -1.61 1.93 -90.57 -0.17 -1.79 16 13 C 0.17 3.27 2.92 -66.95 -0.20 3.07 16 14 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 15 C -0.13 -2.23 5.27 -24.89 -0.13 -2.36 16 16 C -0.15 -2.85 7.09 -24.58 -0.17 -3.02 16 17 C 0.17 4.07 5.48 -2.53 -0.01 4.05 16 18 N -0.59 -14.25 2.40 -162.57 -0.39 -14.64 16 19 C -0.22 -5.86 9.81 -15.06 -0.15 -6.01 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 22 N -0.92 -26.33 10.45 55.49 0.58 -25.75 16 23 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 C -0.12 -2.08 4.91 -26.61 -0.13 -2.21 16 28 C 0.11 1.80 6.44 -3.71 -0.02 1.78 16 29 N -0.25 -2.87 8.63 33.42 0.29 -2.58 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.21 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.12 1.41 4.13 -69.46 -0.29 1.12 16 38 H 0.06 0.87 7.30 -51.93 -0.38 0.49 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 1.32 7.96 -51.93 -0.41 0.91 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 1.15 5.48 -51.93 -0.28 0.87 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.02 0.54 8.12 -51.93 -0.42 0.12 16 46 H 0.07 2.01 6.68 -51.93 -0.35 1.66 16 47 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.06 1.06 6.00 -51.93 -0.31 0.75 16 49 H 0.10 2.05 7.61 -51.93 -0.40 1.66 16 50 H 0.09 1.49 7.00 -51.93 -0.36 1.12 16 51 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 394.58 15.07 5.95 5.95 Total: -1.00 -31.84 394.58 -8.70 -40.54 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -8.24 Total: 1.70 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -1.76 Total: 1.09 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.29 Total: -56.53 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.84 -8.70 -40.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004429051.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.071 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds