Wall clock time and date at job start Wed Apr 1 2020 05:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46495 * 109.46985 * 2 1 4 4 N 1.28523 * 124.44075 * 270.31846 * 3 2 1 5 5 C 1.31140 * 109.05546 * 180.12971 * 4 3 2 6 6 C 1.40922 * 105.77436 * 359.61126 * 5 4 3 7 7 C 1.47808 * 127.23328 * 180.21324 * 6 5 4 8 8 O 1.21552 * 119.99874 * 6.70028 * 7 6 5 9 9 N 1.34776 * 119.99856 * 186.69827 * 7 6 5 10 10 C 1.46924 * 120.63137 * 5.71081 * 9 7 6 11 11 C 1.53627 * 108.54249 * 126.36751 * 10 9 7 12 12 C 1.53048 * 109.23696 * 54.86334 * 11 10 9 13 13 C 1.53002 * 109.45758 * 178.49168 * 12 11 10 14 14 H 1.09001 * 109.87137 * 301.92799 * 13 12 11 15 15 C 1.54324 * 109.88568 * 63.10384 * 13 12 11 16 16 C 1.55160 * 102.94304 * 141.60830 * 15 13 12 17 17 C 1.54911 * 101.58078 * 324.50080 * 16 15 13 18 18 N 1.47016 * 109.88028 * 180.91478 * 13 12 11 19 19 C 1.36944 * 125.65187 * 61.67627 * 18 13 12 20 20 H 1.08002 * 119.99457 * 11.34120 * 19 18 13 21 21 C 1.38811 * 120.00108 * 191.34815 * 19 18 13 22 22 N 1.31614 * 119.99883 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99711 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47357 * 89.99951 * 23 21 19 25 25 H 1.48508 * 109.46768 * 209.99693 * 23 21 19 26 26 H 1.48498 * 109.47405 * 329.99613 * 23 21 19 27 27 C 1.53041 * 109.53214 * 298.50490 * 12 11 10 28 28 C 1.46926 * 120.63231 * 185.99787 * 9 7 6 29 29 N 1.28592 * 124.44669 * 90.00234 * 3 2 1 30 30 H 1.09000 * 109.47109 * 300.00232 * 1 2 3 31 31 H 1.08999 * 109.46849 * 59.99907 * 1 2 3 32 32 H 1.09000 * 109.47000 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47109 * 239.99768 * 2 1 3 34 34 H 1.08999 * 109.46849 * 120.00093 * 2 1 3 35 35 H 1.07997 * 127.10738 * 179.86395 * 5 4 3 36 36 H 1.08997 * 109.59395 * 246.20603 * 10 9 7 37 37 H 1.09007 * 109.58699 * 6.63157 * 10 9 7 38 38 H 1.08994 * 109.63978 * 294.87113 * 11 10 9 39 39 H 1.09003 * 109.46082 * 174.73723 * 11 10 9 40 40 H 1.08992 * 109.46352 * 58.53150 * 12 11 10 41 41 H 1.08996 * 110.71972 * 259.97759 * 15 13 12 42 42 H 1.09002 * 110.71833 * 23.25037 * 15 13 12 43 43 H 1.08998 * 111.00293 * 206.42209 * 16 15 13 44 44 H 1.08999 * 111.03126 * 82.58686 * 16 15 13 45 45 H 1.09000 * 110.36624 * 278.16751 * 17 16 15 46 46 H 1.08999 * 110.46250 * 155.89422 * 17 16 15 47 47 H 0.97003 * 119.99901 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.50108 * 301.41503 * 27 12 11 49 49 H 1.09000 * 109.49312 * 181.32032 * 27 12 11 50 50 H 1.09001 * 109.58355 * 353.36616 * 28 9 7 51 51 H 1.08996 * 109.58950 * 113.79182 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2551 2.0684 -1.0599 5 6 2.6810 3.2590 -0.7120 6 6 2.6846 3.2679 0.6972 7 6 3.0791 4.3830 1.5835 8 8 3.3341 5.4736 1.1112 9 7 3.1559 4.1906 2.9152 10 6 2.9730 2.8507 3.4897 11 6 4.1852 2.5303 4.3775 12 6 4.3572 3.6410 5.4163 13 6 5.5405 3.3081 6.3272 14 1 5.3756 2.3459 6.8121 15 6 6.8435 3.2668 5.5013 16 6 7.8819 3.9101 6.4579 17 6 7.0240 4.9853 7.1705 18 7 5.7006 4.3589 7.3429 19 6 4.7743 4.6990 8.2924 20 1 3.9145 4.0669 8.4588 21 6 4.9403 5.8562 9.0409 22 7 5.9883 6.6262 8.8384 23 14 3.6771 6.3196 10.3366 24 1 4.0608 5.7188 11.6393 25 1 3.6240 7.7977 10.4697 26 1 2.3423 5.8109 9.9309 27 6 4.6195 4.9705 4.7051 28 6 3.4179 5.3177 3.8206 29 7 2.2608 2.0669 1.0604 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.9657 4.0670 -1.3696 36 1 2.0626 2.8310 4.0886 37 1 2.9013 2.1159 2.6878 38 1 5.0827 2.4652 3.7625 39 1 4.0222 1.5796 4.8852 40 1 3.4499 3.7221 6.0148 41 1 7.1194 2.2386 5.2676 42 1 6.7414 3.8564 4.5902 43 1 8.6972 4.3685 5.8983 44 1 8.2628 3.1788 7.1707 45 1 6.9432 5.8782 6.5506 46 1 7.4546 5.2353 8.1401 47 1 6.1045 7.4346 9.3617 48 1 5.5129 4.8824 4.0869 49 1 4.7652 5.7567 5.4458 50 1 3.6398 6.2111 3.2370 51 1 2.5429 5.4951 4.4459 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004429051.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:48 Heat of formation + Delta-G solvation = 90.810662 kcal Electronic energy + Delta-G solvation = -31918.309123 eV Core-core repulsion = 27855.692940 eV Total energy + Delta-G solvation = -4062.616183 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.74642 -41.25564 -39.82212 -37.74688 -35.82435 -34.80537 -34.12773 -33.40129 -32.10621 -31.29875 -31.10840 -29.15911 -26.74932 -26.30942 -25.21061 -24.75041 -23.84546 -22.69129 -22.35342 -21.77847 -20.94970 -19.69879 -18.59308 -18.43666 -18.02384 -17.77124 -17.07824 -16.81468 -16.39821 -16.07969 -15.95814 -15.70797 -15.30802 -15.23719 -15.01375 -14.51330 -14.40552 -14.03700 -13.84079 -13.66963 -13.51399 -13.49395 -13.12988 -13.07273 -12.97013 -12.81150 -12.74033 -12.59439 -12.32019 -12.21678 -12.04027 -11.95318 -11.75292 -11.69152 -11.52639 -11.45851 -11.38606 -11.19547 -10.91180 -10.83003 -10.59919 -10.51314 -9.69664 -8.71848 -7.77564 -5.12283 0.16616 0.87608 1.16790 1.47155 1.47793 1.56036 1.90071 2.10348 2.53616 2.81739 3.39776 3.53154 3.69363 3.87424 3.92405 3.95037 3.96585 4.04181 4.11867 4.23724 4.24809 4.28509 4.30586 4.36052 4.41154 4.54292 4.56402 4.67521 4.70467 4.77559 4.80447 4.86370 4.89367 4.92031 5.02354 5.05978 5.11599 5.17473 5.18929 5.22709 5.26111 5.29171 5.54583 5.56422 5.65291 5.69363 5.72287 5.76183 5.85798 6.29235 6.32970 6.89633 7.10280 7.18618 7.88730 8.55810 9.32471 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015800 B = 0.002689 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.750018 B =10408.821633 C =10577.275984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.117 3.883 3 N -0.131 5.131 4 N -0.293 5.293 5 C 0.029 3.971 6 C -0.060 4.060 7 C 0.602 3.398 8 O -0.568 6.568 9 N -0.589 5.589 10 C 0.091 3.909 11 C -0.115 4.115 12 C -0.084 4.084 13 C 0.159 3.841 14 H 0.034 0.966 15 C -0.116 4.116 16 C -0.139 4.139 17 C 0.177 3.823 18 N -0.609 5.609 19 C -0.219 4.219 20 H 0.077 0.923 21 C -0.065 4.065 22 N -0.949 5.949 23 Si 0.966 3.034 24 H -0.289 1.289 25 H -0.300 1.300 26 H -0.270 1.270 27 C -0.103 4.103 28 C 0.120 3.880 29 N -0.245 5.245 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.116 0.884 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.220 0.780 36 H 0.071 0.929 37 H 0.133 0.867 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.050 0.950 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.062 0.938 45 H -0.010 1.010 46 H 0.036 0.964 47 H 0.243 0.757 48 H 0.059 0.941 49 H 0.050 0.950 50 H 0.078 0.922 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.252 -17.489 -19.409 27.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.000 4.000 3 N -0.036 5.036 4 N -0.133 5.133 5 C -0.153 4.153 6 C -0.221 4.221 7 C 0.389 3.611 8 O -0.446 6.446 9 N -0.320 5.320 10 C -0.031 4.031 11 C -0.154 4.154 12 C -0.105 4.105 13 C 0.053 3.947 14 H 0.052 0.948 15 C -0.154 4.154 16 C -0.177 4.177 17 C 0.051 3.949 18 N -0.333 5.333 19 C -0.349 4.349 20 H 0.095 0.905 21 C -0.258 4.258 22 N -0.599 5.599 23 Si 0.796 3.204 24 H -0.217 1.217 25 H -0.227 1.227 26 H -0.194 1.194 27 C -0.142 4.142 28 C -0.003 4.003 29 N -0.094 5.094 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.237 0.763 36 H 0.089 0.911 37 H 0.149 0.851 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.008 0.992 46 H 0.054 0.946 47 H 0.052 0.948 48 H 0.077 0.923 49 H 0.069 0.931 50 H 0.096 0.904 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.621 -18.054 -19.499 27.937 hybrid contribution -0.186 2.054 1.268 2.421 sum -8.808 -16.001 -18.230 25.806 Atomic orbital electron populations 1.22177 0.92182 1.05542 1.02550 1.22685 0.96790 0.72162 1.08383 1.49021 1.41576 1.14345 0.98662 1.74018 1.17828 1.05434 1.16013 1.25089 1.01046 0.95869 0.93302 1.22808 1.10692 0.93575 0.95011 1.17027 0.76965 0.85655 0.81489 1.90769 1.52194 1.26155 1.75442 1.48026 1.68481 1.10689 1.04851 1.22661 0.98217 0.82855 0.99399 1.21975 0.98112 0.98694 0.96618 1.21437 0.98974 0.94363 0.95742 1.21162 0.94039 0.91058 0.88435 0.94820 1.22641 0.93968 1.01245 0.97516 1.22885 0.97637 0.98664 0.98529 1.21215 0.84925 0.91809 0.96900 1.44723 1.14992 1.40020 1.33573 1.19250 1.01991 1.03358 1.10282 0.90519 1.25527 1.00024 0.97290 1.02914 1.70148 1.30184 1.15530 1.44046 0.85255 0.79423 0.76440 0.79330 1.21676 1.22706 1.19445 1.21663 0.96663 0.98558 0.97279 1.21583 0.98325 0.88956 0.91390 1.74173 1.15617 1.04186 1.15446 0.92615 0.92484 0.86569 0.84900 0.84884 0.76323 0.91101 0.85055 0.91427 0.89022 0.93184 0.89420 0.91212 0.90696 0.91960 0.99195 0.94606 0.94770 0.92291 0.93138 0.90352 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 10.24 71.98 0.74 -0.21 16 2 C 0.12 0.78 7.24 86.38 0.63 1.40 16 3 N -0.13 -2.18 3.94 -187.49 -0.74 -2.92 16 4 N -0.29 -5.70 12.01 -56.16 -0.67 -6.37 16 5 C 0.03 0.63 12.05 85.45 1.03 1.66 16 6 C -0.06 -1.50 6.88 42.24 0.29 -1.21 16 7 C 0.60 18.23 7.70 86.78 0.67 18.90 16 8 O -0.57 -20.48 16.38 -3.88 -0.06 -20.54 16 9 N -0.59 -17.09 2.97 -821.52 -2.44 -19.53 16 10 C 0.09 2.17 6.18 86.51 0.53 2.70 16 11 C -0.12 -2.86 5.15 30.82 0.16 -2.70 16 12 C -0.08 -2.84 1.93 -10.76 -0.02 -2.86 16 13 C 0.16 6.03 2.92 45.34 0.13 6.16 16 14 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 15 C -0.12 -3.75 5.27 31.78 0.17 -3.58 16 16 C -0.14 -5.10 7.09 31.99 0.23 -4.87 16 17 C 0.18 8.68 5.48 86.85 0.48 9.15 16 18 N -0.61 -29.80 2.40 -668.25 -1.60 -31.41 16 19 C -0.22 -11.87 9.81 84.03 0.82 -11.05 16 20 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 21 C -0.06 -3.65 5.48 84.86 0.46 -3.19 16 22 N -0.95 -57.13 10.45 21.65 0.23 -56.90 16 23 Si 0.97 45.92 29.55 68.60 2.03 47.94 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 25 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 27 C -0.10 -3.75 4.91 30.67 0.15 -3.60 16 28 C 0.12 3.94 6.44 86.36 0.56 4.49 16 29 N -0.24 -5.04 8.63 -48.17 -0.42 -5.46 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.22 3.83 8.06 -2.91 -0.02 3.80 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.13 2.79 4.13 -25.07 -0.10 2.68 16 38 H 0.07 1.65 7.30 -2.39 -0.02 1.63 16 39 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.05 1.88 7.96 -2.39 -0.02 1.86 16 41 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.07 2.24 5.48 -2.39 -0.01 2.23 16 43 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 45 H -0.01 -0.54 8.12 -2.39 -0.02 -0.56 16 46 H 0.04 2.02 6.68 -2.39 -0.02 2.00 16 47 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 48 H 0.06 2.12 6.00 -2.39 -0.01 2.10 16 49 H 0.05 2.29 7.61 -2.39 -0.02 2.28 16 50 H 0.08 2.74 7.00 -2.39 -0.02 2.72 16 51 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -72.45 394.58 4.17 -68.28 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.83 Total: 15.71 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 7.02 Total: 11.20 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -5.64 Total: -122.59 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.06 Total: -20.54 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -72.45 4.17 -68.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004429051.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.087 kcal (2) G-P(sol) polarization free energy of solvation -72.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds