Wall clock time and date at job start Wed Apr 1 2020 06:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34778 * 119.99696 * 2 1 4 4 O 1.21288 * 120.00001 * 185.93398 * 3 2 1 5 5 C 1.50692 * 120.00287 * 5.94167 * 3 2 1 6 6 H 1.09004 * 107.84926 * 37.36776 * 5 3 2 7 7 C 1.50951 * 108.02928 * 280.83763 * 5 3 2 8 8 C 1.53678 * 110.95513 * 165.72625 * 7 5 3 9 9 C 1.51879 * 106.90411 * 79.07112 * 8 7 5 10 10 N 1.29896 * 127.79613 * 114.77775 * 9 8 7 11 11 N 1.29026 * 109.22337 * 180.25680 * 10 9 8 12 12 C 1.30973 * 109.71251 * 359.96401 * 11 10 9 13 13 N 1.34595 * 124.58872 * 294.88240 * 9 8 7 14 14 C 1.47504 * 125.02053 * 359.52325 * 13 9 8 15 15 C 1.50854 * 108.03174 * 153.89862 * 5 3 2 16 16 C 1.46499 * 120.00434 * 180.02562 * 2 1 3 17 17 C 1.53040 * 109.46303 * 60.02251 * 16 2 1 18 18 C 1.53191 * 109.31665 * 178.60425 * 17 16 2 19 19 N 1.46928 * 108.76559 * 54.65574 * 18 17 16 20 20 C 1.36925 * 120.63167 * 126.36125 * 19 18 17 21 21 H 1.08005 * 120.00512 * 333.34850 * 20 19 18 22 22 C 1.38813 * 120.00158 * 153.34636 * 20 19 18 23 23 N 1.31621 * 119.99795 * 339.68185 * 22 20 19 24 24 Si 1.86802 * 120.00410 * 159.68038 * 22 20 19 25 25 H 1.48502 * 109.46851 * 90.00123 * 24 22 20 26 26 H 1.48500 * 109.47133 * 210.00141 * 24 22 20 27 27 H 1.48501 * 109.47141 * 330.00516 * 24 22 20 28 28 C 1.46930 * 118.73456 * 306.38419 * 19 18 17 29 29 C 1.53044 * 109.46022 * 299.97006 * 16 2 1 30 30 H 1.08997 * 109.47395 * 84.77835 * 1 2 3 31 31 H 1.08999 * 109.46817 * 204.77730 * 1 2 3 32 32 H 1.08994 * 109.47271 * 324.77148 * 1 2 3 33 33 H 1.08998 * 109.18322 * 45.33976 * 7 5 3 34 34 H 1.09004 * 109.18298 * 286.10366 * 7 5 3 35 35 H 1.09007 * 109.96220 * 319.72092 * 8 7 5 36 36 H 1.09003 * 109.96773 * 198.42313 * 8 7 5 37 37 H 1.07993 * 126.61496 * 179.87311 * 12 11 10 38 38 H 1.09005 * 109.93610 * 306.54657 * 14 13 9 39 39 H 1.08998 * 110.00632 * 185.36392 * 14 13 9 40 40 H 1.08998 * 109.14741 * 314.88003 * 15 5 3 41 41 H 1.09000 * 109.14585 * 74.08590 * 15 5 3 42 42 H 1.09003 * 109.46129 * 179.97438 * 16 2 1 43 43 H 1.09003 * 109.49534 * 298.57504 * 17 16 2 44 44 H 1.09001 * 109.49393 * 58.66216 * 17 16 2 45 45 H 1.09003 * 109.59653 * 294.86611 * 18 17 16 46 46 H 1.09000 * 109.70308 * 174.50612 * 18 17 16 47 47 H 0.97002 * 120.00132 * 179.97438 * 23 22 20 48 48 H 1.08997 * 109.58960 * 293.81899 * 28 19 18 49 49 H 1.09003 * 109.69989 * 173.46852 * 28 19 18 50 50 H 1.09001 * 109.49194 * 301.33703 * 29 16 2 51 51 H 1.08998 * 109.49755 * 61.43212 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3468 1.1701 -0.1086 5 6 1.3914 2.4688 0.1351 6 1 0.5699 2.3113 0.8341 7 6 0.8002 2.8099 -1.2113 8 6 -0.2574 3.9175 -1.0824 9 6 0.4926 5.2331 -0.9670 10 7 0.4944 6.2247 -1.8061 11 7 1.2594 7.1610 -1.3556 12 6 1.7738 6.7970 -0.2074 13 7 1.2941 5.5681 0.0611 14 6 1.5616 4.7191 1.2373 15 6 2.3289 3.4852 0.7380 16 6 2.1975 -1.2687 -0.0006 17 6 1.8282 -2.0702 -1.2508 18 6 2.6221 -3.3803 -1.2658 19 7 2.3851 -4.0910 -0.0018 20 6 1.9513 -5.3897 -0.0024 21 1 1.3821 -5.7686 -0.8385 22 6 2.2430 -6.2195 1.0715 23 7 3.2376 -5.9230 1.8810 24 14 1.2241 -7.7568 1.3679 25 1 1.8302 -8.9003 0.6396 26 1 1.1922 -8.0568 2.8219 27 1 -0.1601 -7.5355 0.8776 28 6 2.6220 -3.3814 1.2628 29 6 1.8283 -2.0712 1.2491 30 1 -0.3634 0.0935 -1.0234 31 1 -0.3633 -0.9331 0.4307 32 1 -0.3633 0.8394 0.5928 33 1 0.3363 1.9192 -1.6348 34 1 1.5948 3.1492 -1.8758 35 1 -0.8611 3.7535 -0.1897 36 1 -0.8945 3.9285 -1.9668 37 1 2.4522 7.3718 0.4055 38 1 0.6214 4.4117 1.6954 39 1 2.1664 5.2650 1.9614 40 1 2.8586 3.0307 1.5752 41 1 3.0521 3.7960 -0.0161 42 1 3.2692 -1.0692 -0.0009 43 1 0.7609 -2.2914 -1.2390 44 1 2.0697 -1.4885 -2.1404 45 1 3.6851 -3.1624 -1.3687 46 1 2.2935 -3.9996 -2.1004 47 1 3.4413 -6.5026 2.6316 48 1 3.6850 -3.1636 1.3660 49 1 2.2928 -3.9994 2.0981 50 1 2.0699 -1.4902 2.1391 51 1 0.7610 -2.2925 1.2372 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005724946.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:35 Heat of formation + Delta-G solvation = 69.107389 kcal Electronic energy + Delta-G solvation = -31656.354541 eV Core-core repulsion = 27592.797233 eV Total energy + Delta-G solvation = -4063.557308 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.59558 -40.58934 -38.04011 -36.92754 -35.32072 -34.59788 -32.70950 -32.25235 -30.47444 -30.10888 -29.64248 -27.47297 -26.97083 -25.09712 -24.72750 -22.79367 -22.68141 -22.27898 -21.23337 -20.61986 -19.34938 -18.91121 -18.03879 -17.23540 -16.84055 -16.22842 -16.22118 -15.55295 -15.41397 -15.08640 -14.90297 -14.54078 -14.35343 -13.87695 -13.67371 -13.61820 -13.31196 -13.10673 -12.93577 -12.87897 -12.68101 -12.57772 -12.40283 -12.33788 -12.03599 -11.68935 -11.55497 -11.40997 -11.23741 -11.17597 -10.88368 -10.75144 -10.62573 -10.51593 -10.43991 -10.28603 -10.16360 -9.84637 -9.76169 -9.56831 -9.40833 -8.60965 -8.39648 -6.77556 -5.85963 -3.25324 1.56427 2.14006 2.54214 2.63513 2.94444 3.33007 3.40598 3.42512 3.77503 3.98070 4.01695 4.09611 4.31834 4.41481 4.44621 4.52557 4.60969 4.77888 4.79593 4.91036 4.99887 5.12109 5.22122 5.24321 5.31315 5.35245 5.38185 5.42365 5.44433 5.54570 5.57893 5.65749 5.69198 5.73640 5.79021 5.88450 5.99186 6.13413 6.24155 6.40580 6.47213 6.52579 6.52724 6.69999 6.79613 6.88875 7.23855 7.42406 7.55772 7.74268 8.15200 8.36910 8.46005 9.13812 9.78055 10.34449 11.23114 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.030875 B = 0.002134 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.676584 B =13115.224567 C =13313.055539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.606 5.606 3 C 0.512 3.488 4 O -0.541 6.541 5 C -0.108 4.108 6 H 0.093 0.907 7 C -0.113 4.113 8 C -0.029 4.029 9 C 0.177 3.823 10 N -0.295 5.295 11 N -0.305 5.305 12 C 0.149 3.851 13 N -0.469 5.469 14 C 0.106 3.894 15 C -0.119 4.119 16 C 0.145 3.855 17 C -0.136 4.136 18 C 0.147 3.853 19 N -0.592 5.592 20 C -0.254 4.254 21 H 0.066 0.934 22 C 0.002 3.998 23 N -0.900 5.900 24 Si 0.900 3.100 25 H -0.287 1.287 26 H -0.289 1.289 27 H -0.279 1.279 28 C 0.174 3.826 29 C -0.144 4.144 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.218 0.782 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.020 0.980 46 H 0.057 0.943 47 H 0.254 0.746 48 H 0.020 0.980 49 H 0.089 0.911 50 H 0.050 0.950 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.687 21.023 1.066 22.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.338 5.338 3 C 0.299 3.701 4 O -0.418 6.418 5 C -0.129 4.129 6 H 0.111 0.889 7 C -0.151 4.151 8 C -0.068 4.068 9 C -0.092 4.092 10 N -0.135 5.135 11 N -0.144 5.144 12 C -0.139 4.139 13 N -0.160 5.160 14 C -0.016 4.016 15 C -0.158 4.158 16 C 0.043 3.957 17 C -0.177 4.177 18 C 0.020 3.980 19 N -0.314 5.314 20 C -0.384 4.384 21 H 0.084 0.916 22 C -0.196 4.196 23 N -0.544 5.544 24 Si 0.729 3.271 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.205 1.205 28 C 0.047 3.953 29 C -0.185 4.185 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.126 0.874 37 H 0.234 0.766 38 H 0.116 0.884 39 H 0.126 0.874 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.037 0.963 46 H 0.076 0.924 47 H 0.064 0.936 48 H 0.038 0.962 49 H 0.107 0.893 50 H 0.068 0.932 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.277 21.746 -0.054 22.931 hybrid contribution -0.126 -1.532 1.522 2.163 sum -7.403 20.213 1.468 21.576 Atomic orbital electron populations 1.21854 0.80161 1.03502 1.01560 1.48174 1.06910 1.06391 1.72284 1.20526 0.87911 0.85124 0.76551 1.90711 1.14346 1.87120 1.49607 1.20703 0.99167 0.93883 0.99181 0.88868 1.21315 0.98782 0.99134 0.95890 1.20544 0.95943 0.85397 1.04936 1.24853 0.97458 0.99677 0.87165 1.74240 1.16950 0.98477 1.23839 1.74532 1.09713 1.21900 1.08245 1.26349 1.03346 0.85960 0.98216 1.46343 1.35372 1.15281 1.18995 1.22520 1.02361 0.91289 0.85451 1.21505 0.97892 0.93601 1.02768 1.21219 0.97229 0.80891 0.96380 1.22348 1.01352 0.97993 0.95970 1.20868 0.95833 0.90969 0.90339 1.44101 1.77788 1.10175 0.99381 1.19150 1.27002 0.86781 1.05440 0.91591 1.25004 0.96893 0.97650 1.00100 1.70070 1.26937 1.39098 1.18296 0.86348 0.80370 0.83171 0.77203 1.21367 1.21553 1.20497 1.20735 0.95315 0.88731 0.90522 1.22560 1.01641 0.98946 0.95307 0.92489 0.90062 0.91587 0.89249 0.90542 0.89153 0.87371 0.76556 0.88354 0.87384 0.88557 0.89824 0.88773 0.92066 0.92981 0.96252 0.92409 0.93584 0.96192 0.89259 0.93154 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 8.43 59.84 0.50 1.14 16 2 N -0.61 -7.58 2.76 -173.89 -0.48 -8.06 16 3 C 0.51 6.41 6.49 -10.99 -0.07 6.34 16 4 O -0.54 -9.14 15.47 5.55 0.09 -9.06 16 5 C -0.11 -0.84 1.34 -93.88 -0.13 -0.96 16 6 H 0.09 0.50 5.82 -51.93 -0.30 0.20 16 7 C -0.11 -0.83 4.76 -27.41 -0.13 -0.96 16 8 C -0.03 -0.18 6.02 -26.95 -0.16 -0.34 16 9 C 0.18 1.68 7.02 -155.75 -1.09 0.58 16 10 N -0.30 -3.85 12.23 32.84 0.40 -3.45 16 11 N -0.30 -3.87 12.24 29.59 0.36 -3.51 16 12 C 0.15 1.27 12.83 -90.35 -1.16 0.11 16 13 N -0.47 -3.57 2.72 -114.23 -0.31 -3.88 16 14 C 0.11 0.47 6.53 -3.16 -0.02 0.45 16 15 C -0.12 -0.85 4.37 -27.47 -0.12 -0.97 16 16 C 0.14 2.36 2.47 -67.89 -0.17 2.19 16 17 C -0.14 -2.26 5.34 -26.61 -0.14 -2.40 16 18 C 0.15 2.99 6.52 -3.71 -0.02 2.97 16 19 N -0.59 -14.26 3.00 -172.32 -0.52 -14.77 16 20 C -0.25 -6.74 9.58 -15.06 -0.14 -6.89 16 21 H 0.07 1.72 7.90 -52.48 -0.41 1.30 16 22 C 0.00 0.06 4.84 -17.43 -0.08 -0.02 16 23 N -0.90 -25.54 11.31 55.49 0.63 -24.91 16 24 Si 0.90 21.01 29.60 -169.99 -5.03 15.98 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 C 0.17 3.96 5.33 -3.71 -0.02 3.94 16 29 C -0.14 -2.55 5.32 -26.61 -0.14 -2.69 16 30 H 0.06 0.43 7.27 -51.93 -0.38 0.05 16 31 H 0.08 0.80 6.47 -51.93 -0.34 0.46 16 32 H 0.07 0.38 6.03 -51.93 -0.31 0.07 16 33 H 0.09 0.61 6.19 -51.93 -0.32 0.29 16 34 H 0.08 0.75 7.91 -51.93 -0.41 0.34 16 35 H 0.09 0.35 7.89 -51.92 -0.41 -0.06 16 36 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.22 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.10 0.27 7.87 -51.93 -0.41 -0.14 16 39 H 0.11 0.23 8.13 -51.93 -0.42 -0.19 16 40 H 0.10 0.72 7.89 -51.93 -0.41 0.31 16 41 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 42 H 0.09 1.80 6.92 -51.93 -0.36 1.44 16 43 H 0.06 0.98 7.72 -51.93 -0.40 0.58 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16 47 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 48 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.09 2.28 6.06 -51.93 -0.31 1.96 16 50 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 51 H 0.06 1.01 6.72 -51.93 -0.35 0.66 16 LS Contribution 387.71 15.07 5.84 5.84 Total: -1.00 -35.34 387.71 -10.17 -45.51 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -8.05 Total: -2.18 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -3.10 Total: 2.48 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: 0.08 Total: -58.58 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.34 -10.17 -45.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005724946.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.620 kcal (2) G-P(sol) polarization free energy of solvation -35.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds