Wall clock time and date at job start Wed Apr 1 2020 05:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34775 * 119.99975 * 2 1 4 4 O 1.21286 * 119.99882 * 356.60756 * 3 2 1 5 5 C 1.50703 * 120.00303 * 176.61677 * 3 2 1 6 6 H 1.08998 * 109.45826 * 54.27615 * 5 3 2 7 7 C 1.53109 * 109.45152 * 294.33135 * 5 3 2 8 8 C 1.53434 * 109.56947 * 169.90294 * 7 5 3 9 9 C 1.50597 * 108.33426 * 49.82243 * 8 7 5 10 10 N 1.32911 * 129.16220 * 163.38426 * 9 8 7 11 11 N 1.29025 * 108.63154 * 180.21022 * 10 9 8 12 12 N 1.29100 * 110.26037 * 359.97438 * 11 10 9 13 13 C 1.46505 * 126.00553 * 179.90848 * 12 11 10 14 14 C 1.34397 * 107.98869 * 359.92291 * 12 11 10 15 15 C 1.50534 * 129.25534 * 180.15204 * 14 12 11 16 16 C 1.46499 * 120.00328 * 179.97438 * 2 1 3 17 17 C 1.53044 * 109.45846 * 306.01479 * 16 2 1 18 18 C 1.53188 * 109.31092 * 181.38138 * 17 16 2 19 19 N 1.46932 * 108.77725 * 305.36179 * 18 17 16 20 20 C 1.36932 * 120.63333 * 233.58128 * 19 18 17 21 21 H 1.08001 * 119.99564 * 148.48431 * 20 19 18 22 22 C 1.38809 * 120.00266 * 328.21074 * 20 19 18 23 23 N 1.31612 * 119.99715 * 349.16078 * 22 20 19 24 24 Si 1.86799 * 120.00067 * 169.15608 * 22 20 19 25 25 H 1.48500 * 109.46828 * 90.00125 * 24 22 20 26 26 H 1.48496 * 109.47144 * 210.00027 * 24 22 20 27 27 H 1.48501 * 109.47359 * 330.00304 * 24 22 20 28 28 C 1.46930 * 118.73315 * 53.86282 * 19 18 17 29 29 C 1.53049 * 109.45450 * 66.07748 * 16 2 1 30 30 H 1.08998 * 109.46851 * 275.08173 * 1 2 3 31 31 H 1.09002 * 109.46734 * 35.07860 * 1 2 3 32 32 H 1.08997 * 109.46954 * 155.08081 * 1 2 3 33 33 H 1.09000 * 109.45434 * 289.93307 * 7 5 3 34 34 H 1.08994 * 109.45581 * 49.87668 * 7 5 3 35 35 H 1.08998 * 109.70457 * 290.10413 * 8 7 5 36 36 H 1.08996 * 109.71325 * 169.54580 * 8 7 5 37 37 H 1.09000 * 109.46969 * 270.02462 * 13 12 11 38 38 H 1.09004 * 109.46975 * 30.02066 * 13 12 11 39 39 H 1.08997 * 109.47201 * 150.02038 * 13 12 11 40 40 H 1.08997 * 109.69393 * 43.86475 * 15 14 12 41 41 H 1.09003 * 109.72788 * 283.30495 * 15 14 12 42 42 H 1.08996 * 109.45324 * 186.04204 * 16 2 1 43 43 H 1.09001 * 109.49972 * 61.43525 * 17 16 2 44 44 H 1.08993 * 109.49742 * 301.32853 * 17 16 2 45 45 H 1.08998 * 109.59292 * 185.57701 * 18 17 16 46 46 H 1.08998 * 109.58998 * 65.15036 * 18 17 16 47 47 H 0.97008 * 120.00122 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.59179 * 65.92944 * 28 19 18 49 49 H 1.09005 * 109.58094 * 186.35081 * 28 19 18 50 50 H 1.08996 * 109.50116 * 298.56805 * 29 16 2 51 51 H 1.09003 * 109.49555 * 58.66826 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5341 2.2166 -0.0622 5 6 3.6440 1.1684 0.0770 6 1 4.0488 0.5443 -0.7196 7 6 4.0855 0.6131 1.4338 8 6 5.6015 0.3763 1.4235 9 6 6.2725 1.6248 0.9145 10 7 7.5464 1.9915 1.0101 11 7 7.6887 3.1397 0.4391 12 7 6.5582 3.5481 -0.0318 13 6 6.3261 4.8073 -0.7438 14 6 5.6315 2.6152 0.2462 15 6 4.1630 2.6030 -0.0847 16 6 2.1976 -1.2687 0.0006 17 6 1.7178 -2.1340 1.1682 18 6 2.5099 -3.4450 1.1862 19 7 2.3910 -4.0876 -0.1298 20 6 1.9630 -5.3839 -0.2372 21 1 1.4045 -5.6978 -1.1066 22 6 2.2519 -6.2958 0.7687 23 7 3.1100 -5.9809 1.7157 24 14 1.4228 -7.9696 0.7783 25 1 2.2475 -8.9349 0.0079 26 1 1.2831 -8.4448 2.1782 27 1 0.0788 -7.8600 0.1562 28 6 2.7459 -3.3147 -1.3279 29 6 1.9457 -2.0033 -1.3182 30 1 -0.3633 0.0910 1.0236 31 1 -0.3633 0.8410 -0.5906 32 1 -0.3633 -0.9320 -0.4330 33 1 3.8351 1.3280 2.2176 34 1 3.5723 -0.3293 1.6248 35 1 5.8381 -0.4614 0.7675 36 1 5.9466 0.1599 2.4344 37 1 6.0659 5.5869 -0.0278 38 1 7.2309 5.0936 -1.2799 39 1 5.5088 4.6781 -1.4533 40 1 4.0154 2.9338 -1.1128 41 1 3.6272 3.2657 0.5948 42 1 3.2642 -1.0719 0.1087 43 1 0.6566 -2.3518 1.0475 44 1 1.8760 -1.6005 2.1054 45 1 2.1059 -4.1057 1.9532 46 1 3.5586 -3.2355 1.3970 47 1 3.3116 -6.6180 2.4189 48 1 3.8134 -3.0947 -1.3180 49 1 2.4975 -3.8894 -2.2203 50 1 0.8824 -2.2223 -1.4154 51 1 2.2662 -1.3768 -2.1506 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005886765.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:16 Heat of formation + Delta-G solvation = 83.745716 kcal Electronic energy + Delta-G solvation = -32284.862039 eV Core-core repulsion = 28221.939497 eV Total energy + Delta-G solvation = -4062.922542 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.53554 -40.48040 -37.78381 -36.77892 -35.15247 -35.01473 -32.32921 -30.81614 -30.76033 -30.21667 -29.58889 -28.08850 -27.28402 -25.21396 -24.25087 -23.31107 -22.28445 -22.14744 -21.54857 -20.15836 -19.40042 -18.69500 -17.52195 -17.21080 -16.92767 -16.60106 -15.78001 -15.36488 -14.99479 -14.70573 -14.20548 -14.07070 -14.04558 -13.92600 -13.78213 -13.66187 -13.51383 -13.12600 -13.05989 -12.80784 -12.65687 -12.48655 -12.28615 -12.17789 -11.95977 -11.65482 -11.56454 -11.28660 -11.13354 -11.08891 -10.81297 -10.76578 -10.66641 -10.44821 -10.34030 -10.18397 -10.10135 -9.88148 -9.84845 -9.50766 -8.95309 -8.60975 -8.40622 -6.70918 -5.86151 -3.34348 1.41059 2.13296 2.44624 2.60976 3.05618 3.33002 3.40435 3.41372 3.95714 4.18101 4.36229 4.42818 4.51516 4.60637 4.63463 4.69642 4.90512 4.92898 5.00340 5.08118 5.27987 5.29335 5.32802 5.36211 5.40000 5.43236 5.49433 5.59488 5.66317 5.68604 5.71123 5.86725 5.88316 5.93436 5.94914 6.03098 6.11683 6.17957 6.25560 6.33929 6.39917 6.44204 6.50582 6.66707 6.67107 6.85010 7.25357 7.47257 7.59070 7.72985 8.17961 8.39363 8.40308 9.14777 9.75469 10.32997 11.22185 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015192 B = 0.002930 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.580400 B = 9553.367688 C =10737.953618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.603 5.603 3 C 0.521 3.479 4 O -0.553 6.553 5 C -0.102 4.102 6 H 0.104 0.896 7 C -0.120 4.120 8 C -0.032 4.032 9 C -0.015 4.015 10 N -0.260 5.260 11 N -0.101 5.101 12 N -0.285 5.285 13 C 0.080 3.920 14 C -0.018 4.018 15 C -0.022 4.022 16 C 0.132 3.868 17 C -0.149 4.149 18 C 0.174 3.826 19 N -0.591 5.591 20 C -0.256 4.256 21 H 0.064 0.936 22 C 0.007 3.993 23 N -0.903 5.903 24 Si 0.903 3.097 25 H -0.286 1.286 26 H -0.289 1.289 27 H -0.279 1.279 28 C 0.147 3.853 29 C -0.143 4.143 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.091 0.909 46 H 0.022 0.978 47 H 0.255 0.745 48 H 0.020 0.980 49 H 0.057 0.943 50 H 0.063 0.937 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.565 18.662 -3.854 19.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.334 5.334 3 C 0.309 3.691 4 O -0.432 6.432 5 C -0.124 4.124 6 H 0.122 0.878 7 C -0.158 4.158 8 C -0.071 4.071 9 C -0.155 4.155 10 N -0.124 5.124 11 N -0.078 5.078 12 N -0.078 5.078 13 C -0.061 4.061 14 C -0.152 4.152 15 C -0.061 4.061 16 C 0.030 3.970 17 C -0.189 4.189 18 C 0.048 3.952 19 N -0.314 5.314 20 C -0.386 4.386 21 H 0.081 0.919 22 C -0.192 4.192 23 N -0.546 5.546 24 Si 0.733 3.267 25 H -0.213 1.213 26 H -0.215 1.215 27 H -0.205 1.205 28 C 0.020 3.980 29 C -0.183 4.183 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.102 0.898 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.109 0.891 46 H 0.040 0.960 47 H 0.065 0.935 48 H 0.038 0.962 49 H 0.076 0.924 50 H 0.082 0.918 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.825 19.459 -3.595 19.872 hybrid contribution -1.446 -0.952 -0.231 1.746 sum 0.380 18.507 -3.826 18.902 Atomic orbital electron populations 1.21557 0.79582 1.02741 1.01680 1.48153 1.07066 1.06319 1.71862 1.20352 0.89389 0.83429 0.75961 1.90655 1.70395 1.31258 1.50925 1.21297 0.92650 0.97372 1.01049 0.87796 1.21862 0.95640 1.03110 0.95171 1.19974 0.92514 0.92016 1.02635 1.21757 0.90652 0.99271 1.03797 1.74813 1.17029 1.04484 1.16102 1.78576 1.06270 1.08849 1.14151 1.46800 1.06555 1.16510 1.37893 1.22264 1.04916 0.81507 0.97405 1.21796 0.95207 0.92171 1.06041 1.19888 0.85931 0.97210 1.03116 1.21566 0.96397 0.81881 0.97181 1.22633 1.02001 0.98755 0.95549 1.20778 0.95768 0.89376 0.89294 1.44037 1.76758 1.10376 1.00212 1.19133 1.27968 0.85165 1.06308 0.91856 1.25165 0.97244 0.97677 0.99119 1.69950 1.34060 1.35473 1.15164 0.86294 0.79264 0.84205 0.76959 1.21313 1.21543 1.20483 1.20973 0.95074 0.90349 0.91614 1.22515 1.02039 0.98392 0.95337 0.92887 0.91343 0.90695 0.90751 0.88544 0.89126 0.88988 0.89010 0.88002 0.88293 0.89816 0.88514 0.88754 0.92030 0.92776 0.89052 0.96003 0.93485 0.96173 0.92418 0.91806 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.07 9.32 59.85 0.56 1.63 16 2 N -0.60 -7.91 2.76 -173.88 -0.48 -8.39 16 3 C 0.52 6.85 6.99 -10.98 -0.08 6.77 16 4 O -0.55 -8.58 15.42 5.55 0.09 -8.50 16 5 C -0.10 -1.11 1.64 -91.50 -0.15 -1.26 16 6 H 0.10 1.11 7.42 -51.93 -0.39 0.72 16 7 C -0.12 -1.29 4.62 -26.45 -0.12 -1.42 16 8 C -0.03 -0.37 6.30 -27.71 -0.17 -0.54 16 9 C -0.01 -0.19 7.11 -83.12 -0.59 -0.78 16 10 N -0.26 -3.99 12.40 33.16 0.41 -3.58 16 11 N -0.10 -1.41 13.19 60.35 0.80 -0.62 16 12 N -0.29 -3.11 3.73 -64.00 -0.24 -3.34 16 13 C 0.08 0.44 11.27 59.85 0.67 1.12 16 14 C -0.02 -0.21 6.76 -82.50 -0.56 -0.77 16 15 C -0.02 -0.22 4.77 -27.75 -0.13 -0.35 16 16 C 0.13 1.85 1.45 -67.88 -0.10 1.76 16 17 C -0.15 -2.42 4.92 -26.61 -0.13 -2.56 16 18 C 0.17 3.67 5.25 -3.71 -0.02 3.65 16 19 N -0.59 -13.39 2.98 -172.05 -0.51 -13.90 16 20 C -0.26 -6.56 9.57 -15.06 -0.14 -6.71 16 21 H 0.06 1.61 7.85 -52.49 -0.41 1.20 16 22 C 0.01 0.18 5.04 -17.43 -0.09 0.10 16 23 N -0.90 -24.67 11.09 55.49 0.62 -24.06 16 24 Si 0.90 20.74 29.57 -169.99 -5.03 15.72 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 C 0.15 2.74 6.54 -3.48 -0.02 2.71 16 29 C -0.14 -2.15 5.43 -26.38 -0.14 -2.29 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.84 7.53 -51.93 -0.39 0.45 16 32 H 0.07 0.90 6.58 -51.93 -0.34 0.56 16 33 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 34 H 0.10 1.11 4.83 -51.93 -0.25 0.86 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.36 7.71 -51.93 -0.40 -0.04 16 40 H 0.08 0.73 7.87 -51.93 -0.41 0.32 16 41 H 0.10 1.00 7.69 -51.93 -0.40 0.60 16 42 H 0.09 1.27 4.38 -51.93 -0.23 1.04 16 43 H 0.06 1.04 7.43 -51.93 -0.39 0.66 16 44 H 0.05 0.80 7.58 -51.93 -0.39 0.41 16 45 H 0.09 2.23 6.14 -51.93 -0.32 1.91 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.06 1.08 7.93 -51.93 -0.41 0.66 16 50 H 0.06 1.00 7.00 -51.93 -0.36 0.64 16 51 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 388.98 15.07 5.86 5.86 Total: -1.00 -32.02 388.98 -7.74 -39.76 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -8.03 Total: 0.00 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -1.22 Total: 1.06 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.59 Total: -53.90 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.02 -7.74 -39.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005886765.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.503 kcal (2) G-P(sol) polarization free energy of solvation -32.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds