Wall clock time and date at job start Wed Apr 1 2020 05:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34775 * 119.99975 * 2 1 4 4 O 1.21286 * 119.99882 * 356.60756 * 3 2 1 5 5 C 1.50703 * 120.00303 * 176.61677 * 3 2 1 6 6 H 1.08998 * 109.45826 * 54.27615 * 5 3 2 7 7 C 1.53109 * 109.45152 * 294.33135 * 5 3 2 8 8 C 1.53434 * 109.56947 * 169.90294 * 7 5 3 9 9 C 1.50597 * 108.33426 * 49.82243 * 8 7 5 10 10 N 1.32911 * 129.16220 * 163.38426 * 9 8 7 11 11 N 1.29025 * 108.63154 * 180.21022 * 10 9 8 12 12 N 1.29100 * 110.26037 * 359.97438 * 11 10 9 13 13 C 1.46505 * 126.00553 * 179.90848 * 12 11 10 14 14 C 1.34397 * 107.98869 * 359.92291 * 12 11 10 15 15 C 1.50534 * 129.25534 * 180.15204 * 14 12 11 16 16 C 1.46499 * 120.00328 * 179.97438 * 2 1 3 17 17 C 1.53044 * 109.45846 * 306.01479 * 16 2 1 18 18 C 1.53188 * 109.31092 * 181.38138 * 17 16 2 19 19 N 1.46932 * 108.77725 * 305.36179 * 18 17 16 20 20 C 1.36932 * 120.63333 * 233.58128 * 19 18 17 21 21 H 1.08001 * 119.99564 * 148.48431 * 20 19 18 22 22 C 1.38809 * 120.00266 * 328.21074 * 20 19 18 23 23 N 1.31612 * 119.99715 * 349.16078 * 22 20 19 24 24 Si 1.86799 * 120.00067 * 169.15608 * 22 20 19 25 25 H 1.48500 * 109.46828 * 90.00125 * 24 22 20 26 26 H 1.48496 * 109.47144 * 210.00027 * 24 22 20 27 27 H 1.48501 * 109.47359 * 330.00304 * 24 22 20 28 28 C 1.46930 * 118.73315 * 53.86282 * 19 18 17 29 29 C 1.53049 * 109.45450 * 66.07748 * 16 2 1 30 30 H 1.08998 * 109.46851 * 275.08173 * 1 2 3 31 31 H 1.09002 * 109.46734 * 35.07860 * 1 2 3 32 32 H 1.08997 * 109.46954 * 155.08081 * 1 2 3 33 33 H 1.09000 * 109.45434 * 289.93307 * 7 5 3 34 34 H 1.08994 * 109.45581 * 49.87668 * 7 5 3 35 35 H 1.08998 * 109.70457 * 290.10413 * 8 7 5 36 36 H 1.08996 * 109.71325 * 169.54580 * 8 7 5 37 37 H 1.09000 * 109.46969 * 270.02462 * 13 12 11 38 38 H 1.09004 * 109.46975 * 30.02066 * 13 12 11 39 39 H 1.08997 * 109.47201 * 150.02038 * 13 12 11 40 40 H 1.08997 * 109.69393 * 43.86475 * 15 14 12 41 41 H 1.09003 * 109.72788 * 283.30495 * 15 14 12 42 42 H 1.08996 * 109.45324 * 186.04204 * 16 2 1 43 43 H 1.09001 * 109.49972 * 61.43525 * 17 16 2 44 44 H 1.08993 * 109.49742 * 301.32853 * 17 16 2 45 45 H 1.08998 * 109.59292 * 185.57701 * 18 17 16 46 46 H 1.08998 * 109.58998 * 65.15036 * 18 17 16 47 47 H 0.97008 * 120.00122 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.59179 * 65.92944 * 28 19 18 49 49 H 1.09005 * 109.58094 * 186.35081 * 28 19 18 50 50 H 1.08996 * 109.50116 * 298.56805 * 29 16 2 51 51 H 1.09003 * 109.49555 * 58.66826 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5341 2.2166 -0.0622 5 6 3.6440 1.1684 0.0770 6 1 4.0488 0.5443 -0.7196 7 6 4.0855 0.6131 1.4338 8 6 5.6015 0.3763 1.4235 9 6 6.2725 1.6248 0.9145 10 7 7.5464 1.9915 1.0101 11 7 7.6887 3.1397 0.4391 12 7 6.5582 3.5481 -0.0318 13 6 6.3261 4.8073 -0.7438 14 6 5.6315 2.6152 0.2462 15 6 4.1630 2.6030 -0.0847 16 6 2.1976 -1.2687 0.0006 17 6 1.7178 -2.1340 1.1682 18 6 2.5099 -3.4450 1.1862 19 7 2.3910 -4.0876 -0.1298 20 6 1.9630 -5.3839 -0.2372 21 1 1.4045 -5.6978 -1.1066 22 6 2.2519 -6.2958 0.7687 23 7 3.1100 -5.9809 1.7157 24 14 1.4228 -7.9696 0.7783 25 1 2.2475 -8.9349 0.0079 26 1 1.2831 -8.4448 2.1782 27 1 0.0788 -7.8600 0.1562 28 6 2.7459 -3.3147 -1.3279 29 6 1.9457 -2.0033 -1.3182 30 1 -0.3633 0.0910 1.0236 31 1 -0.3633 0.8410 -0.5906 32 1 -0.3633 -0.9320 -0.4330 33 1 3.8351 1.3280 2.2176 34 1 3.5723 -0.3293 1.6248 35 1 5.8381 -0.4614 0.7675 36 1 5.9466 0.1599 2.4344 37 1 6.0659 5.5869 -0.0278 38 1 7.2309 5.0936 -1.2799 39 1 5.5088 4.6781 -1.4533 40 1 4.0154 2.9338 -1.1128 41 1 3.6272 3.2657 0.5948 42 1 3.2642 -1.0719 0.1087 43 1 0.6566 -2.3518 1.0475 44 1 1.8760 -1.6005 2.1054 45 1 2.1059 -4.1057 1.9532 46 1 3.5586 -3.2355 1.3970 47 1 3.3116 -6.6180 2.4189 48 1 3.8134 -3.0947 -1.3180 49 1 2.4975 -3.8894 -2.2203 50 1 0.8824 -2.2223 -1.4154 51 1 2.2662 -1.3768 -2.1506 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005886765.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:15 Heat of formation + Delta-G solvation = 64.491426 kcal Electronic energy + Delta-G solvation = -32285.696968 eV Core-core repulsion = 28221.939497 eV Total energy + Delta-G solvation = -4063.757471 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.44047 -41.54952 -39.14350 -37.71323 -36.52749 -35.87722 -34.01706 -31.83056 -31.71456 -31.50144 -31.17174 -28.77349 -28.26216 -26.90803 -25.20187 -24.36244 -23.71994 -23.57227 -22.38772 -21.15289 -20.77670 -19.76189 -18.69873 -18.46760 -17.97059 -17.52294 -17.02202 -16.66173 -16.40505 -15.82872 -15.42496 -15.24439 -15.13254 -14.95998 -14.85665 -14.74093 -14.60756 -14.16183 -14.10677 -14.02263 -13.75690 -13.59697 -13.18131 -13.15710 -13.11042 -12.96013 -12.86408 -12.59631 -12.56924 -12.39749 -12.17840 -12.01288 -12.00000 -11.87829 -11.71855 -11.56854 -11.41870 -11.30180 -10.94745 -10.70306 -10.50194 -9.87735 -9.57819 -8.56134 -7.82260 -5.31635 0.53665 1.43917 1.46145 1.49515 1.51768 1.57787 1.59542 2.02572 2.54640 3.08170 3.31562 3.35974 3.62838 3.71555 3.75386 3.77631 3.86065 3.87965 4.07321 4.10102 4.20626 4.26876 4.32916 4.42681 4.46097 4.54179 4.54614 4.57391 4.62979 4.68378 4.73548 4.80711 4.86463 4.89909 4.94129 4.99374 5.01823 5.03752 5.10958 5.14608 5.16483 5.23347 5.31188 5.40696 5.50411 5.62259 5.64164 5.71498 5.85422 6.41994 6.48222 7.13725 7.22969 7.44879 7.92591 8.43510 9.23192 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015192 B = 0.002930 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.580400 B = 9553.367688 C =10737.953618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.601 5.601 3 C 0.525 3.475 4 O -0.573 6.573 5 C -0.099 4.099 6 H 0.112 0.888 7 C -0.111 4.111 8 C -0.029 4.029 9 C -0.032 4.032 10 N -0.301 5.301 11 N -0.126 5.126 12 N -0.276 5.276 13 C 0.066 3.934 14 C -0.011 4.011 15 C -0.013 4.013 16 C 0.144 3.856 17 C -0.134 4.134 18 C 0.182 3.818 19 N -0.609 5.609 20 C -0.260 4.260 21 H 0.063 0.937 22 C -0.044 4.044 23 N -0.931 5.931 24 Si 0.960 3.040 25 H -0.288 1.288 26 H -0.295 1.295 27 H -0.272 1.272 28 C 0.144 3.856 29 C -0.130 4.130 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.056 0.944 44 H 0.069 0.931 45 H 0.053 0.947 46 H 0.008 0.992 47 H 0.249 0.751 48 H 0.023 0.977 49 H 0.054 0.946 50 H 0.060 0.940 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.506 20.504 -5.215 21.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.331 5.331 3 C 0.314 3.686 4 O -0.453 6.453 5 C -0.120 4.120 6 H 0.130 0.870 7 C -0.149 4.149 8 C -0.068 4.068 9 C -0.173 4.173 10 N -0.164 5.164 11 N -0.104 5.104 12 N -0.068 5.068 13 C -0.073 4.073 14 C -0.146 4.146 15 C -0.052 4.052 16 C 0.042 3.958 17 C -0.174 4.174 18 C 0.055 3.945 19 N -0.333 5.333 20 C -0.391 4.391 21 H 0.080 0.920 22 C -0.240 4.240 23 N -0.577 5.577 24 Si 0.789 3.211 25 H -0.215 1.215 26 H -0.221 1.221 27 H -0.196 1.196 28 C 0.018 3.982 29 C -0.170 4.170 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.141 0.859 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.123 0.877 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.026 0.974 47 H 0.058 0.942 48 H 0.041 0.959 49 H 0.072 0.928 50 H 0.078 0.922 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.756 21.343 -4.986 21.931 hybrid contribution -1.128 -1.447 0.135 1.840 sum -0.372 19.897 -4.851 20.483 Atomic orbital electron populations 1.21624 0.79035 1.03007 1.02050 1.48067 1.07412 1.05845 1.71819 1.20582 0.90003 0.82852 0.75134 1.90655 1.71016 1.31804 1.51826 1.21292 0.91156 0.98362 1.01214 0.86976 1.21766 0.94949 1.02840 0.95376 1.19959 0.92799 0.91535 1.02540 1.22066 0.90413 1.00331 1.04510 1.74756 1.18503 1.05538 1.17607 1.78483 1.07713 1.08921 1.15294 1.47209 1.05536 1.17422 1.36675 1.22773 1.06579 0.79837 0.98153 1.21963 0.95760 0.91727 1.05183 1.19878 0.84556 0.96489 1.04304 1.21320 0.96979 0.81923 0.95610 1.22366 1.00689 0.96766 0.97530 1.20543 0.95364 0.90712 0.87836 1.44285 1.77107 1.10077 1.01845 1.19422 1.27200 0.86557 1.05896 0.91960 1.25806 0.98246 1.00652 0.99310 1.70099 1.35644 1.36158 1.15753 0.85388 0.78616 0.80696 0.76391 1.21452 1.22115 1.19649 1.21099 0.95777 0.91511 0.89838 1.22339 1.01137 0.96787 0.96738 0.92518 0.91102 0.90403 0.90439 0.89145 0.89306 0.89084 0.87171 0.86769 0.85857 0.87863 0.88355 0.87726 0.92560 0.91217 0.92820 0.97417 0.94164 0.95920 0.92751 0.92170 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.88 9.32 127.77 1.19 3.07 16 2 N -0.60 -14.06 2.76 -822.41 -2.27 -16.33 16 3 C 0.53 12.22 6.99 87.66 0.61 12.83 16 4 O -0.57 -16.00 15.42 -3.05 -0.05 -16.05 16 5 C -0.10 -1.88 1.64 -11.36 -0.02 -1.90 16 6 H 0.11 2.02 7.42 -2.39 -0.02 2.00 16 7 C -0.11 -2.20 4.62 30.78 0.14 -2.06 16 8 C -0.03 -0.65 6.30 29.96 0.19 -0.46 16 9 C -0.03 -0.82 7.11 41.75 0.30 -0.52 16 10 N -0.30 -9.24 12.40 -48.99 -0.61 -9.85 16 11 N -0.13 -3.48 13.19 37.02 0.49 -2.99 16 12 N -0.28 -5.49 3.73 -356.40 -1.33 -6.81 16 13 C 0.07 0.53 11.27 127.77 1.44 1.97 16 14 C -0.01 -0.23 6.76 41.50 0.28 0.05 16 15 C -0.01 -0.22 4.77 29.93 0.14 -0.07 16 16 C 0.14 3.73 1.45 45.02 0.07 3.79 16 17 C -0.13 -4.18 4.92 30.67 0.15 -4.03 16 18 C 0.18 7.71 5.25 86.36 0.45 8.17 16 19 N -0.61 -27.59 2.98 -698.24 -2.08 -29.67 16 20 C -0.26 -13.40 9.57 84.03 0.80 -12.60 16 21 H 0.06 3.15 7.85 -2.91 -0.02 3.13 16 22 C -0.04 -2.35 5.04 84.86 0.43 -1.92 16 23 N -0.93 -52.18 11.09 21.65 0.24 -51.94 16 24 Si 0.96 43.14 29.57 68.60 2.03 45.17 16 25 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 26 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 27 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 28 C 0.14 5.17 6.54 86.51 0.57 5.74 16 29 C -0.13 -3.59 5.43 30.82 0.17 -3.42 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.55 7.53 -2.39 -0.02 1.53 16 32 H 0.08 1.67 6.58 -2.39 -0.02 1.66 16 33 H 0.08 1.50 8.12 -2.39 -0.02 1.48 16 34 H 0.09 1.91 4.83 -2.39 -0.01 1.90 16 35 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 39 H 0.12 0.42 7.71 -2.39 -0.02 0.40 16 40 H 0.10 1.38 7.87 -2.39 -0.02 1.36 16 41 H 0.10 1.71 7.69 -2.39 -0.02 1.69 16 42 H 0.11 2.55 4.38 -2.39 -0.01 2.54 16 43 H 0.06 1.83 7.43 -2.39 -0.02 1.82 16 44 H 0.07 1.97 7.58 -2.39 -0.02 1.95 16 45 H 0.05 2.69 6.14 -2.39 -0.01 2.68 16 46 H 0.01 0.34 8.14 -2.39 -0.02 0.33 16 47 H 0.25 13.68 8.31 -92.70 -0.77 12.91 16 48 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 49 H 0.05 1.97 7.93 -2.38 -0.02 1.95 16 50 H 0.06 1.74 7.00 -2.39 -0.02 1.72 16 51 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -70.03 388.98 4.27 -65.76 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.94 Total: 14.07 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 6.91 Total: 8.65 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -5.56 Total: -117.59 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.05 Total: -16.05 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -70.03 4.27 -65.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005886765.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.247 kcal (2) G-P(sol) polarization free energy of solvation -70.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds