Wall clock time and date at job start Wed Apr 1 2020 05:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34770 * 120.00146 * 2 1 4 4 O 1.21276 * 120.00406 * 179.97438 * 3 2 1 5 5 C 1.50710 * 119.99938 * 359.97438 * 3 2 1 6 6 C 1.50699 * 109.47266 * 180.02562 * 5 3 2 7 7 N 1.30835 * 125.95868 * 90.02259 * 6 5 3 8 8 C 1.33243 * 109.82321 * 180.02562 * 7 6 5 9 9 C 1.50703 * 125.52134 * 179.97438 * 8 7 6 10 10 C 1.52999 * 117.49985 * 188.74543 * 9 8 7 11 11 C 1.52997 * 117.49753 * 120.08503 * 9 8 7 12 12 N 1.30706 * 108.94993 * 0.02562 * 8 7 6 13 13 N 1.34429 * 125.96102 * 269.72339 * 6 5 3 14 14 C 1.46500 * 126.82325 * 359.97438 * 13 6 5 15 15 C 1.46500 * 119.99834 * 179.97438 * 2 1 3 16 16 C 1.53041 * 109.45870 * 59.99916 * 15 2 1 17 17 C 1.53197 * 109.31035 * 178.61223 * 16 15 2 18 18 N 1.46921 * 108.89220 * 54.56963 * 17 16 15 19 19 C 1.36934 * 120.63409 * 126.46494 * 18 17 16 20 20 H 1.08000 * 119.99464 * 331.92132 * 19 18 17 21 21 C 1.38810 * 120.00385 * 151.92408 * 19 18 17 22 22 N 1.31619 * 119.99689 * 343.17004 * 21 19 18 23 23 Si 1.86795 * 119.99988 * 163.17171 * 21 19 18 24 24 H 1.48499 * 109.47320 * 89.99982 * 23 21 19 25 25 H 1.48500 * 109.47299 * 209.99808 * 23 21 19 26 26 H 1.48507 * 109.47261 * 329.99989 * 23 21 19 27 27 C 1.46963 * 118.71124 * 306.63494 * 18 17 16 28 28 C 1.53042 * 109.46253 * 299.93507 * 15 2 1 29 29 H 1.09000 * 109.46998 * 269.99903 * 1 2 3 30 30 H 1.09000 * 109.46926 * 29.99837 * 1 2 3 31 31 H 1.08999 * 109.46872 * 150.00539 * 1 2 3 32 32 H 1.09003 * 109.46872 * 300.00417 * 5 3 2 33 33 H 1.09004 * 109.46773 * 59.99930 * 5 3 2 34 34 H 1.08997 * 115.55247 * 334.41997 * 9 8 7 35 35 H 1.09002 * 117.49432 * 0.02562 * 10 9 8 36 36 H 1.08992 * 117.50033 * 145.02195 * 10 9 8 37 37 H 1.09001 * 117.50311 * 214.97880 * 11 9 8 38 38 H 1.09005 * 117.49849 * 359.97438 * 11 9 8 39 39 H 1.08993 * 109.47085 * 90.00840 * 14 13 6 40 40 H 1.08994 * 109.46974 * 210.00711 * 14 13 6 41 41 H 1.09002 * 109.46857 * 330.00214 * 14 13 6 42 42 H 1.08996 * 109.46112 * 179.97438 * 15 2 1 43 43 H 1.09005 * 109.49645 * 58.66588 * 16 15 2 44 44 H 1.08998 * 109.50347 * 298.56326 * 16 15 2 45 45 H 1.09000 * 109.58445 * 174.42964 * 17 16 15 46 46 H 1.09004 * 109.58739 * 294.70519 * 17 16 15 47 47 H 0.97000 * 119.99637 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.47297 * 293.57143 * 27 18 17 49 49 H 1.09005 * 109.70555 * 173.29008 * 27 18 17 50 50 H 1.09004 * 109.49452 * 301.34025 * 28 15 2 51 51 H 1.08996 * 109.50041 * 61.43208 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3647 3.6178 -0.0011 7 7 2.8636 4.2015 -1.0604 8 6 3.6959 5.1741 -0.6905 9 6 4.4643 6.0718 -1.6259 10 6 5.5224 6.9911 -1.0126 11 6 4.2067 7.5770 -1.5309 12 7 3.7387 5.2225 0.6149 13 7 2.8737 4.2217 1.0867 14 6 2.5864 3.8975 2.4862 15 6 2.1976 -1.2687 0.0006 16 6 1.8276 -2.0716 -1.2487 17 6 2.6213 -3.3819 -1.2623 18 7 2.3880 -4.0924 0.0023 19 6 1.9572 -5.3922 0.0031 20 1 1.3678 -5.7662 -0.8211 21 6 2.2777 -6.2291 1.0632 22 7 3.2478 -5.9014 1.8902 23 14 1.3325 -7.8203 1.3158 24 1 2.0018 -8.9172 0.5715 25 1 1.2997 -8.1522 2.7629 26 1 -0.0556 -7.6566 0.8139 27 6 2.6226 -3.3800 1.2661 28 6 1.8289 -2.0698 1.2514 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5137 32 1 0.7591 2.5298 -0.8908 33 1 0.7584 2.5302 0.8892 34 1 4.6687 5.6576 -2.6131 35 1 5.6631 6.9461 0.0674 36 1 6.4228 7.1818 -1.5964 37 1 4.2421 8.1530 -2.4556 38 1 3.4812 7.9178 -0.7922 39 1 3.2961 3.1492 2.8388 40 1 2.6762 4.7980 3.0936 41 1 1.5731 3.5041 2.5674 42 1 3.2691 -1.0694 0.0000 43 1 2.0689 -1.4908 -2.1391 44 1 0.7604 -2.2928 -1.2363 45 1 2.2899 -4.0011 -2.0960 46 1 3.6840 -3.1643 -1.3687 47 1 3.4720 -6.4864 2.6307 48 1 3.6857 -3.1622 1.3686 49 1 2.2938 -3.9970 2.1024 50 1 2.0710 -1.4877 2.1406 51 1 0.7617 -2.2910 1.2404 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006431424.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:31 Heat of formation + Delta-G solvation = 108.230555 kcal Electronic energy + Delta-G solvation = -30871.787399 eV Core-core repulsion = 26809.926600 eV Total energy + Delta-G solvation = -4061.860800 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.34171 -40.02083 -37.62851 -37.33159 -35.19167 -34.08592 -33.07197 -32.25482 -30.37255 -29.78163 -28.84742 -27.46753 -26.95979 -25.01912 -23.94202 -22.68445 -22.42809 -22.22782 -20.93112 -20.12816 -19.29304 -18.86312 -17.35329 -17.23827 -16.80112 -16.20282 -15.83835 -15.64285 -15.49316 -14.96077 -14.79295 -14.05187 -13.90778 -13.83832 -13.64050 -13.50420 -13.34901 -13.23864 -13.05721 -12.68239 -12.50152 -12.39277 -12.29931 -12.25648 -11.89078 -11.71471 -11.51163 -11.15417 -11.12831 -10.86015 -10.78323 -10.73856 -10.42199 -10.25279 -10.13102 -10.08959 -9.97661 -9.80156 -9.72156 -9.56691 -9.29899 -8.58815 -8.38562 -6.71542 -5.82271 -3.24875 1.38374 2.08833 2.55435 2.56209 3.07305 3.34893 3.42002 3.43690 3.59696 3.72771 4.13930 4.23687 4.44089 4.46483 4.56503 4.59837 4.71416 4.82782 4.90930 4.96201 5.10553 5.15865 5.27191 5.30740 5.34970 5.35806 5.38682 5.46683 5.54169 5.59775 5.64346 5.82099 5.82482 5.88786 6.02627 6.15199 6.18695 6.26381 6.29458 6.45103 6.51622 6.56003 6.59448 6.73460 6.83200 6.92404 7.29416 7.42501 7.61427 7.76302 7.99243 8.15022 8.41413 9.17506 9.80747 10.37817 11.26664 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024527 B = 0.002040 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.338839 B =13723.381868 C =13823.661034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.605 5.605 3 C 0.516 3.484 4 O -0.530 6.530 5 C -0.065 4.065 6 C 0.304 3.696 7 N -0.527 5.527 8 C 0.255 3.745 9 C -0.070 4.070 10 C -0.161 4.161 11 C -0.159 4.159 12 N -0.316 5.316 13 N -0.372 5.372 14 C 0.095 3.905 15 C 0.146 3.854 16 C -0.138 4.138 17 C 0.147 3.853 18 N -0.592 5.592 19 C -0.253 4.253 20 H 0.066 0.934 21 C 0.002 3.998 22 N -0.902 5.902 23 Si 0.902 3.098 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.174 3.826 28 C -0.144 4.144 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.130 0.870 33 H 0.114 0.886 34 H 0.131 0.869 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.053 0.947 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.020 0.980 47 H 0.254 0.746 48 H 0.020 0.980 49 H 0.090 0.910 50 H 0.049 0.951 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.081 23.990 -1.890 24.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.337 5.337 3 C 0.301 3.699 4 O -0.406 6.406 5 C -0.107 4.107 6 C 0.027 3.973 7 N -0.254 5.254 8 C -0.026 4.026 9 C -0.090 4.090 10 C -0.199 4.199 11 C -0.198 4.198 12 N -0.144 5.144 13 N -0.162 5.162 14 C -0.047 4.047 15 C 0.044 3.956 16 C -0.178 4.178 17 C 0.020 3.980 18 N -0.315 5.315 19 C -0.382 4.382 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.546 5.546 23 Si 0.732 3.268 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.047 3.953 28 C -0.184 4.184 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.148 0.852 33 H 0.132 0.868 34 H 0.149 0.851 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.038 0.962 47 H 0.064 0.936 48 H 0.038 0.962 49 H 0.109 0.891 50 H 0.068 0.932 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.040 24.251 -1.556 24.818 hybrid contribution -0.742 -1.157 0.454 1.448 sum -5.783 23.094 -1.101 23.833 Atomic orbital electron populations 1.21840 0.79872 1.03440 1.02003 1.48125 1.07020 1.06141 1.72457 1.20027 0.87970 0.84646 0.77257 1.90766 1.13639 1.86953 1.49232 1.20254 0.95632 0.87989 1.06872 1.23303 0.96086 0.95193 0.82723 1.70213 1.15142 1.11054 1.29018 1.23018 0.95530 0.94680 0.89405 1.20047 1.01482 0.89525 0.97975 1.23042 0.93008 1.01752 1.02057 1.23031 0.99926 0.93385 1.03458 1.77904 1.13821 1.10681 1.12005 1.50053 1.32892 1.25546 1.07701 1.21975 1.02494 1.03085 0.77182 1.21231 0.97270 0.80613 0.96468 1.22376 1.01367 0.98074 0.96019 1.20864 0.95868 0.90903 0.90343 1.44080 1.77977 1.10039 0.99377 1.19156 1.25978 0.86485 1.06618 0.91658 1.25067 0.96937 0.97701 0.99970 1.70031 1.28259 1.38199 1.18161 0.86305 0.79849 0.83551 0.77100 1.21372 1.21584 1.20494 1.20757 0.95312 0.88646 0.90582 1.22547 1.01664 0.98920 0.95244 0.92370 0.91416 0.90071 0.85175 0.86788 0.85137 0.87875 0.87849 0.87790 0.88660 0.89798 0.88843 0.89131 0.88710 0.92795 0.91966 0.92403 0.96216 0.93586 0.96214 0.89143 0.93189 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 9.33 59.85 0.56 1.21 16 2 N -0.60 -8.07 2.76 -173.88 -0.48 -8.55 16 3 C 0.52 7.28 7.67 -10.98 -0.08 7.19 16 4 O -0.53 -10.08 15.36 5.56 0.09 -9.99 16 5 C -0.07 -0.65 4.58 -29.03 -0.13 -0.78 16 6 C 0.30 4.05 6.48 -155.69 -1.01 3.04 16 7 N -0.53 -8.06 11.19 -8.16 -0.09 -8.15 16 8 C 0.26 3.65 7.69 -156.86 -1.21 2.44 16 9 C -0.07 -0.75 6.33 -91.77 -0.58 -1.33 16 10 C -0.16 -1.40 10.14 -26.69 -0.27 -1.67 16 11 C -0.16 -1.30 10.24 -26.70 -0.27 -1.57 16 12 N -0.32 -4.51 12.24 32.42 0.40 -4.11 16 13 N -0.37 -4.72 4.04 -65.10 -0.26 -4.98 16 14 C 0.09 0.77 11.33 59.85 0.68 1.45 16 15 C 0.15 2.48 2.48 -67.89 -0.17 2.31 16 16 C -0.14 -2.35 5.31 -26.61 -0.14 -2.49 16 17 C 0.15 3.06 6.51 -3.71 -0.02 3.03 16 18 N -0.59 -14.50 3.00 -172.29 -0.52 -15.01 16 19 C -0.25 -6.77 9.58 -15.06 -0.14 -6.92 16 20 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 21 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 22 N -0.90 -25.89 11.20 55.49 0.62 -25.27 16 23 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 C 0.17 4.05 5.30 -3.69 -0.02 4.03 16 28 C -0.14 -2.62 5.34 -26.61 -0.14 -2.76 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.42 6.44 -51.93 -0.33 0.08 16 31 H 0.08 0.80 6.45 -51.93 -0.34 0.47 16 32 H 0.13 1.03 7.40 -51.93 -0.38 0.65 16 33 H 0.11 0.69 7.08 -51.93 -0.37 0.33 16 34 H 0.13 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.10 1.01 7.88 -51.93 -0.41 0.60 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.46 7.10 -51.93 -0.37 0.09 16 42 H 0.09 1.89 6.90 -51.93 -0.36 1.54 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.06 1.01 6.72 -51.93 -0.35 0.66 16 45 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 48 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 50 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 51 H 0.06 1.03 7.72 -51.93 -0.40 0.63 16 LS Contribution 407.38 15.07 6.14 6.14 Total: -1.00 -35.95 407.38 -10.42 -46.36 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -8.23 Total: 0.19 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -3.04 Total: 7.15 kcal Atomic # 7 Polarization: -65.75 SS G_CDS: -0.33 Total: -66.08 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.95 -10.42 -46.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006431424.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.594 kcal (2) G-P(sol) polarization free energy of solvation -35.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds