Wall clock time and date at job start Wed Apr 1 2020 05:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34770 * 120.00146 * 2 1 4 4 O 1.21276 * 120.00406 * 179.97438 * 3 2 1 5 5 C 1.50710 * 119.99938 * 359.97438 * 3 2 1 6 6 C 1.50699 * 109.47266 * 180.02562 * 5 3 2 7 7 N 1.30835 * 125.95868 * 90.02259 * 6 5 3 8 8 C 1.33243 * 109.82321 * 180.02562 * 7 6 5 9 9 C 1.50703 * 125.52134 * 179.97438 * 8 7 6 10 10 C 1.52999 * 117.49985 * 188.74543 * 9 8 7 11 11 C 1.52997 * 117.49753 * 120.08503 * 9 8 7 12 12 N 1.30706 * 108.94993 * 0.02562 * 8 7 6 13 13 N 1.34429 * 125.96102 * 269.72339 * 6 5 3 14 14 C 1.46500 * 126.82325 * 359.97438 * 13 6 5 15 15 C 1.46500 * 119.99834 * 179.97438 * 2 1 3 16 16 C 1.53041 * 109.45870 * 59.99916 * 15 2 1 17 17 C 1.53197 * 109.31035 * 178.61223 * 16 15 2 18 18 N 1.46921 * 108.89220 * 54.56963 * 17 16 15 19 19 C 1.36934 * 120.63409 * 126.46494 * 18 17 16 20 20 H 1.08000 * 119.99464 * 331.92132 * 19 18 17 21 21 C 1.38810 * 120.00385 * 151.92408 * 19 18 17 22 22 N 1.31619 * 119.99689 * 343.17004 * 21 19 18 23 23 Si 1.86795 * 119.99988 * 163.17171 * 21 19 18 24 24 H 1.48499 * 109.47320 * 89.99982 * 23 21 19 25 25 H 1.48500 * 109.47299 * 209.99808 * 23 21 19 26 26 H 1.48507 * 109.47261 * 329.99989 * 23 21 19 27 27 C 1.46963 * 118.71124 * 306.63494 * 18 17 16 28 28 C 1.53042 * 109.46253 * 299.93507 * 15 2 1 29 29 H 1.09000 * 109.46998 * 269.99903 * 1 2 3 30 30 H 1.09000 * 109.46926 * 29.99837 * 1 2 3 31 31 H 1.08999 * 109.46872 * 150.00539 * 1 2 3 32 32 H 1.09003 * 109.46872 * 300.00417 * 5 3 2 33 33 H 1.09004 * 109.46773 * 59.99930 * 5 3 2 34 34 H 1.08997 * 115.55247 * 334.41997 * 9 8 7 35 35 H 1.09002 * 117.49432 * 0.02562 * 10 9 8 36 36 H 1.08992 * 117.50033 * 145.02195 * 10 9 8 37 37 H 1.09001 * 117.50311 * 214.97880 * 11 9 8 38 38 H 1.09005 * 117.49849 * 359.97438 * 11 9 8 39 39 H 1.08993 * 109.47085 * 90.00840 * 14 13 6 40 40 H 1.08994 * 109.46974 * 210.00711 * 14 13 6 41 41 H 1.09002 * 109.46857 * 330.00214 * 14 13 6 42 42 H 1.08996 * 109.46112 * 179.97438 * 15 2 1 43 43 H 1.09005 * 109.49645 * 58.66588 * 16 15 2 44 44 H 1.08998 * 109.50347 * 298.56326 * 16 15 2 45 45 H 1.09000 * 109.58445 * 174.42964 * 17 16 15 46 46 H 1.09004 * 109.58739 * 294.70519 * 17 16 15 47 47 H 0.97000 * 119.99637 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.47297 * 293.57143 * 27 18 17 49 49 H 1.09005 * 109.70555 * 173.29008 * 27 18 17 50 50 H 1.09004 * 109.49452 * 301.34025 * 28 15 2 51 51 H 1.08996 * 109.50041 * 61.43208 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3647 3.6178 -0.0011 7 7 2.8636 4.2015 -1.0604 8 6 3.6959 5.1741 -0.6905 9 6 4.4643 6.0718 -1.6259 10 6 5.5224 6.9911 -1.0126 11 6 4.2067 7.5770 -1.5309 12 7 3.7387 5.2225 0.6149 13 7 2.8737 4.2217 1.0867 14 6 2.5864 3.8975 2.4862 15 6 2.1976 -1.2687 0.0006 16 6 1.8276 -2.0716 -1.2487 17 6 2.6213 -3.3819 -1.2623 18 7 2.3880 -4.0924 0.0023 19 6 1.9572 -5.3922 0.0031 20 1 1.3678 -5.7662 -0.8211 21 6 2.2777 -6.2291 1.0632 22 7 3.2478 -5.9014 1.8902 23 14 1.3325 -7.8203 1.3158 24 1 2.0018 -8.9172 0.5715 25 1 1.2997 -8.1522 2.7629 26 1 -0.0556 -7.6566 0.8139 27 6 2.6226 -3.3800 1.2661 28 6 1.8289 -2.0698 1.2514 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5137 32 1 0.7591 2.5298 -0.8908 33 1 0.7584 2.5302 0.8892 34 1 4.6687 5.6576 -2.6131 35 1 5.6631 6.9461 0.0674 36 1 6.4228 7.1818 -1.5964 37 1 4.2421 8.1530 -2.4556 38 1 3.4812 7.9178 -0.7922 39 1 3.2961 3.1492 2.8388 40 1 2.6762 4.7980 3.0936 41 1 1.5731 3.5041 2.5674 42 1 3.2691 -1.0694 0.0000 43 1 2.0689 -1.4908 -2.1391 44 1 0.7604 -2.2928 -1.2363 45 1 2.2899 -4.0011 -2.0960 46 1 3.6840 -3.1643 -1.3687 47 1 3.4720 -6.4864 2.6307 48 1 3.6857 -3.1622 1.3686 49 1 2.2938 -3.9970 2.1024 50 1 2.0710 -1.4877 2.1406 51 1 0.7617 -2.2910 1.2404 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006431424.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:30 Heat of formation + Delta-G solvation = 85.734068 kcal Electronic energy + Delta-G solvation = -30872.762920 eV Core-core repulsion = 26809.926600 eV Total energy + Delta-G solvation = -4062.836321 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.27091 -41.18933 -39.06395 -38.16658 -36.59435 -34.93649 -34.46238 -33.58501 -31.98173 -31.43542 -29.89305 -28.26321 -27.89983 -26.77508 -24.76913 -24.01611 -23.87231 -23.30137 -22.07291 -21.07366 -20.68809 -20.02090 -18.77370 -18.30591 -18.05525 -17.35286 -16.86153 -16.68666 -16.64117 -16.31919 -15.78435 -15.55644 -15.37926 -14.98752 -14.79783 -14.67332 -14.45285 -14.24296 -14.19759 -14.09706 -13.84951 -13.22316 -13.18746 -13.12200 -13.07810 -13.01079 -12.68547 -12.61515 -12.49970 -12.40716 -12.10690 -11.99881 -11.89843 -11.87795 -11.48580 -11.47461 -11.33769 -11.09183 -11.04512 -10.70553 -10.57085 -10.19569 -9.61279 -8.72121 -7.88263 -5.34504 0.44064 1.29506 1.48292 1.49306 1.52113 1.59327 1.60061 2.06003 2.51648 2.78217 2.97111 3.28023 3.33524 3.44637 3.56112 3.65011 3.87323 3.91674 3.96251 4.05245 4.06866 4.20049 4.22973 4.29080 4.33573 4.42532 4.46281 4.55620 4.59578 4.63728 4.72656 4.73501 4.77230 4.86185 4.89114 5.02235 5.04490 5.08093 5.10283 5.13696 5.21990 5.27000 5.29139 5.36094 5.44892 5.56828 5.63711 5.69233 5.76869 6.37769 6.39760 7.03414 7.09430 7.13089 7.82946 8.36321 9.19083 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024527 B = 0.002040 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.338839 B =13723.381868 C =13823.661034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.599 5.599 3 C 0.514 3.486 4 O -0.589 6.589 5 C -0.053 4.053 6 C 0.293 3.707 7 N -0.562 5.562 8 C 0.240 3.760 9 C -0.098 4.098 10 C -0.155 4.155 11 C -0.138 4.138 12 N -0.341 5.341 13 N -0.376 5.376 14 C 0.084 3.916 15 C 0.156 3.844 16 C -0.121 4.121 17 C 0.142 3.858 18 N -0.608 5.608 19 C -0.260 4.260 20 H 0.072 0.928 21 C -0.054 4.054 22 N -0.939 5.939 23 Si 0.970 3.030 24 H -0.288 1.288 25 H -0.294 1.294 26 H -0.265 1.265 27 C 0.180 3.820 28 C -0.124 4.124 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.158 0.842 33 H 0.162 0.838 34 H 0.133 0.867 35 H 0.088 0.912 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.128 0.872 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.063 0.937 46 H 0.001 0.999 47 H 0.250 0.750 48 H -0.016 1.016 49 H 0.061 0.939 50 H 0.059 0.941 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.338 25.525 -2.427 27.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.331 5.331 3 C 0.302 3.698 4 O -0.469 6.469 5 C -0.095 4.095 6 C 0.016 3.984 7 N -0.290 5.290 8 C -0.041 4.041 9 C -0.118 4.118 10 C -0.193 4.193 11 C -0.177 4.177 12 N -0.170 5.170 13 N -0.166 5.166 14 C -0.056 4.056 15 C 0.052 3.948 16 C -0.161 4.161 17 C 0.016 3.984 18 N -0.331 5.331 19 C -0.390 4.390 20 H 0.089 0.911 21 C -0.249 4.249 22 N -0.585 5.585 23 Si 0.798 3.202 24 H -0.215 1.215 25 H -0.220 1.220 26 H -0.189 1.189 27 C 0.053 3.947 28 C -0.163 4.163 29 H 0.097 0.903 30 H 0.125 0.875 31 H 0.096 0.904 32 H 0.176 0.824 33 H 0.180 0.820 34 H 0.151 0.849 35 H 0.107 0.893 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.125 0.875 41 H 0.146 0.854 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.082 0.918 46 H 0.019 0.981 47 H 0.059 0.941 48 H 0.002 0.998 49 H 0.079 0.921 50 H 0.078 0.922 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.357 25.811 -2.098 27.211 hybrid contribution 0.335 -1.637 0.610 1.779 sum -8.022 24.174 -1.488 25.514 Atomic orbital electron populations 1.22237 0.76536 1.05304 1.03973 1.48028 1.08800 1.04408 1.71829 1.20710 0.87421 0.85913 0.75774 1.90757 1.16512 1.87796 1.51866 1.20413 0.94731 0.83850 1.10482 1.23880 0.96285 0.95615 0.82582 1.70189 1.16219 1.12023 1.30538 1.23619 0.95630 0.94973 0.89904 1.20252 1.03089 0.90646 0.97846 1.23089 0.93957 1.00763 1.01457 1.23098 0.98976 0.91400 1.04185 1.77815 1.14857 1.12067 1.12289 1.50339 1.32206 1.24973 1.09065 1.22342 1.04297 1.03677 0.75288 1.20751 0.95875 0.82408 0.95742 1.22157 1.01501 0.95834 0.96613 1.21003 0.95595 0.92770 0.89057 1.44337 1.78091 1.09976 1.00727 1.19531 1.25427 0.87481 1.06581 0.91055 1.25872 0.97874 1.01080 1.00035 1.70207 1.30033 1.39465 1.18770 0.85242 0.79039 0.79453 0.76481 1.21472 1.22027 1.18947 1.20533 0.93976 0.90648 0.89506 1.22245 1.01342 0.96254 0.96503 0.90330 0.87469 0.90423 0.82414 0.82019 0.84922 0.89332 0.85733 0.85188 0.89318 0.90870 0.87486 0.85382 0.92446 0.91294 0.90157 0.91818 0.98102 0.94134 0.99822 0.92085 0.92220 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.80 9.33 127.77 1.19 2.00 16 2 N -0.60 -14.33 2.76 -822.42 -2.27 -16.60 16 3 C 0.51 13.47 7.67 87.66 0.67 14.14 16 4 O -0.59 -22.62 15.36 -3.02 -0.05 -22.67 16 5 C -0.05 -0.86 4.58 29.10 0.13 -0.73 16 6 C 0.29 7.36 6.48 138.22 0.90 8.26 16 7 N -0.56 -16.96 11.19 -179.73 -2.01 -18.97 16 8 C 0.24 6.92 7.69 138.63 1.07 7.99 16 9 C -0.10 -2.11 6.33 -11.54 -0.07 -2.18 16 10 C -0.15 -2.61 10.14 30.62 0.31 -2.30 16 11 C -0.14 -2.08 10.24 30.62 0.31 -1.77 16 12 N -0.34 -9.82 12.24 -51.33 -0.63 -10.44 16 13 N -0.38 -9.17 4.04 -359.88 -1.45 -10.62 16 14 C 0.08 1.21 11.33 127.77 1.45 2.66 16 15 C 0.16 5.17 2.48 45.02 0.11 5.29 16 16 C -0.12 -3.94 5.31 30.67 0.16 -3.77 16 17 C 0.14 5.94 6.51 86.37 0.56 6.50 16 18 N -0.61 -30.28 3.00 -699.00 -2.10 -32.38 16 19 C -0.26 -14.02 9.58 84.03 0.81 -13.22 16 20 H 0.07 3.69 7.88 -2.91 -0.02 3.67 16 21 C -0.05 -2.96 4.92 84.86 0.42 -2.54 16 22 N -0.94 -55.71 11.20 21.65 0.24 -55.47 16 23 Si 0.97 44.00 29.59 68.60 2.03 46.03 16 24 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 26 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 27 C 0.18 8.70 5.30 86.35 0.46 9.15 16 28 C -0.12 -4.42 5.34 30.67 0.16 -4.26 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.11 0.63 6.44 -2.39 -0.02 0.61 16 31 H 0.08 1.15 6.45 -2.39 -0.02 1.14 16 32 H 0.16 1.72 7.40 -2.39 -0.02 1.70 16 33 H 0.16 1.02 7.08 -2.38 -0.02 1.00 16 34 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.09 1.75 7.88 -2.39 -0.02 1.74 16 36 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.11 1.21 8.14 -2.39 -0.02 1.20 16 41 H 0.13 0.80 7.10 -2.39 -0.02 0.79 16 42 H 0.06 2.37 6.90 -2.39 -0.02 2.36 16 43 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 44 H 0.08 2.36 6.72 -2.39 -0.02 2.34 16 45 H 0.06 2.54 7.93 -2.39 -0.02 2.52 16 46 H 0.00 0.04 8.14 -2.39 -0.02 0.03 16 47 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 48 H -0.02 -0.89 8.14 -2.39 -0.02 -0.90 16 49 H 0.06 3.30 6.07 -2.38 -0.01 3.28 16 50 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 51 H 0.07 2.45 7.72 -2.39 -0.02 2.43 16 Total: -1.00 -84.51 407.38 3.33 -81.17 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.93 Total: 14.73 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: 8.64 Total: 25.21 kcal Atomic # 7 Polarization: -136.26 SS G_CDS: -8.22 Total: -144.48 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.05 Total: -22.67 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -84.51 3.33 -81.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006431424.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.909 kcal (2) G-P(sol) polarization free energy of solvation -84.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds