Wall clock time and date at job start Wed Apr 1 2020 05:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.48561 * 111.00389 * 2 1 4 4 C 1.54379 * 104.59823 * 200.96055 * 3 2 1 5 5 C 1.54260 * 105.05712 * 23.85351 * 4 3 2 6 6 C 1.48565 * 110.99989 * 244.58378 * 2 1 3 7 7 H 1.09002 * 110.41289 * 40.26248 * 6 2 1 8 8 C 1.50696 * 110.40858 * 277.82188 * 6 2 1 9 9 C 1.35366 * 126.38677 * 129.83072 * 8 6 2 10 10 C 1.41502 * 105.50272 * 179.97438 * 9 8 6 11 11 C 1.47711 * 126.51604 * 179.97438 * 10 9 8 12 12 O 1.21569 * 120.00218 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99801 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99828 * 180.02562 * 13 11 10 15 15 H 1.09007 * 109.50223 * 34.93696 * 14 13 11 16 16 C 1.53039 * 109.49779 * 155.00191 * 14 13 11 17 17 C 1.53046 * 109.53772 * 181.31480 * 16 14 13 18 18 C 1.53191 * 109.31356 * 298.63661 * 17 16 14 19 19 N 1.46921 * 108.77990 * 54.63284 * 18 17 16 20 20 C 1.36934 * 120.63049 * 126.40945 * 19 18 17 21 21 H 1.08004 * 119.99988 * 207.67568 * 20 19 18 22 22 C 1.38813 * 119.99903 * 27.68419 * 20 19 18 23 23 N 1.31615 * 120.00055 * 17.35144 * 22 20 19 24 24 Si 1.86797 * 119.99696 * 197.35409 * 22 20 19 25 25 H 1.48499 * 109.47430 * 89.99940 * 24 22 20 26 26 H 1.48507 * 109.46979 * 209.99832 * 24 22 20 27 27 H 1.48501 * 109.47290 * 329.99722 * 24 22 20 28 28 C 1.46930 * 118.73789 * 306.39607 * 19 18 17 29 29 N 1.31808 * 106.96552 * 359.97438 * 10 9 8 30 30 N 1.28467 * 110.07263 * 359.72013 * 29 10 9 31 31 H 0.96998 * 124.88741 * 180.29364 * 30 29 10 32 32 H 1.09008 * 109.47148 * 60.12360 * 1 2 3 33 33 H 1.08999 * 109.47489 * 180.12407 * 1 2 3 34 34 H 1.09005 * 109.47163 * 300.13014 * 1 2 3 35 35 H 1.08999 * 110.41367 * 82.17991 * 3 2 1 36 36 H 1.09001 * 110.51040 * 319.78954 * 3 2 1 37 37 H 1.08995 * 110.32318 * 264.95713 * 4 3 2 38 38 H 1.09004 * 110.40953 * 142.79325 * 4 3 2 39 39 H 1.09005 * 110.32531 * 118.89638 * 5 4 3 40 40 H 1.09003 * 110.32347 * 241.10174 * 5 4 3 41 41 H 1.07996 * 127.25096 * 0.02562 * 9 8 6 42 42 H 0.96997 * 120.00092 * 0.02562 * 13 11 10 43 43 H 1.09001 * 109.46140 * 301.33398 * 16 14 13 44 44 H 1.08999 * 109.45826 * 61.29631 * 16 14 13 45 45 H 1.08999 * 109.49517 * 58.58796 * 17 16 14 46 46 H 1.08998 * 109.49758 * 178.65197 * 17 16 14 47 47 H 1.09003 * 109.58414 * 174.42452 * 18 17 16 48 48 H 1.09001 * 109.58287 * 294.84822 * 18 17 16 49 49 H 0.96996 * 119.99836 * 180.02562 * 23 22 20 50 50 H 1.08993 * 109.58424 * 293.81481 * 28 19 18 51 51 H 1.09000 * 109.58704 * 173.38753 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4432 -0.0539 -1.3585 6 6 2.0013 -0.5953 -1.2527 7 1 1.4098 -0.2712 -2.1090 8 6 2.0102 -2.0992 -1.1575 9 6 1.5063 -2.9645 -2.0684 10 6 1.7501 -4.2543 -1.5401 11 6 1.3857 -5.5429 -2.1636 12 8 0.8174 -5.5590 -3.2381 13 7 1.6833 -6.7007 -1.5411 14 6 1.3224 -7.9787 -2.1598 15 1 1.4184 -7.8987 -3.2427 16 6 2.2549 -9.0772 -1.6441 17 6 1.8998 -10.4064 -2.3145 18 6 0.4599 -10.7863 -1.9552 19 7 -0.4274 -9.6724 -2.3164 20 6 -1.5165 -9.8802 -3.1200 21 1 -1.8938 -9.0776 -3.7364 22 6 -2.1357 -11.1224 -3.1421 23 7 -1.9155 -11.9849 -2.1727 24 14 -3.2815 -11.5698 -4.5480 25 1 -2.5026 -12.2152 -5.6352 26 1 -4.3216 -12.5101 -4.0587 27 1 -3.9312 -10.3397 -5.0677 28 6 -0.1241 -8.3312 -1.7987 29 7 2.3641 -4.0874 -0.3857 30 7 2.5289 -2.8351 -0.1510 31 1 2.9610 -2.4705 0.6371 32 1 -0.3634 0.5119 -0.8912 33 1 -0.3634 -1.0276 0.0022 34 1 -0.3634 0.5159 0.8889 35 1 2.0079 1.7916 1.0120 36 1 1.4105 2.0229 -0.6591 37 1 4.1483 1.1748 0.2934 38 1 3.6954 2.0994 -1.1695 39 1 3.6936 0.1554 -2.3986 40 1 4.1482 -0.7694 -0.9352 41 1 1.0212 -2.7216 -3.0022 42 1 2.1364 -6.6878 -0.6836 43 1 3.2871 -8.8168 -1.8781 44 1 2.1406 -9.1731 -0.5644 45 1 1.9899 -10.3039 -3.3959 46 1 2.5796 -11.1833 -1.9648 47 1 0.1688 -11.6794 -2.5082 48 1 0.3889 -10.9776 -0.8845 49 1 -2.3479 -12.8530 -2.1884 50 1 -0.2428 -8.3223 -0.7153 51 1 -0.8004 -7.6043 -2.2485 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007372721.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:14 Heat of formation + Delta-G solvation = 38.516868 kcal Electronic energy + Delta-G solvation = -30499.603453 eV Core-core repulsion = 26434.719641 eV Total energy + Delta-G solvation = -4064.883812 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.76890 -40.79820 -39.83138 -38.89102 -35.95528 -34.22159 -33.23071 -32.88884 -32.80558 -32.34445 -30.30118 -28.74430 -27.26240 -26.56487 -25.53076 -23.88278 -23.41478 -22.73147 -22.06934 -21.77212 -21.28454 -20.56891 -18.79307 -18.66584 -17.97212 -17.20785 -16.94987 -16.76939 -16.63323 -16.09139 -15.90878 -15.68632 -15.40356 -15.18650 -15.03043 -14.75865 -14.73900 -14.55261 -14.23273 -14.11207 -14.02132 -13.42055 -13.31597 -13.03307 -12.75996 -12.75118 -12.57586 -12.55814 -12.39404 -12.12911 -12.08391 -11.98429 -11.97144 -11.79034 -11.61089 -11.44373 -11.31874 -11.15695 -10.62176 -10.47664 -10.10084 -10.04523 -9.64050 -8.70248 -7.90141 -5.35818 0.49806 1.02194 1.44883 1.46297 1.55884 1.82540 2.18708 2.35203 2.51284 2.90160 3.23444 3.33112 3.54302 3.64803 3.72503 3.85771 3.94045 4.07487 4.10611 4.14369 4.25031 4.32647 4.41806 4.47586 4.48813 4.51645 4.57406 4.60215 4.71651 4.80047 4.80735 4.91737 4.94159 4.99239 5.01778 5.07039 5.12316 5.14156 5.14506 5.24676 5.26537 5.26714 5.45255 5.55009 5.63232 5.75303 5.76378 5.89734 6.07175 6.36706 6.49180 6.87750 7.12370 7.19602 7.81733 8.32482 9.15652 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020502 B = 0.002021 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.361972 B =13854.473147 C =14589.035753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.523 5.523 3 C 0.031 3.969 4 C -0.120 4.120 5 C -0.118 4.118 6 C 0.128 3.872 7 H 0.086 0.914 8 C 0.054 3.946 9 C -0.194 4.194 10 C -0.031 4.031 11 C 0.597 3.403 12 O -0.573 6.573 13 N -0.696 5.696 14 C 0.142 3.858 15 H 0.063 0.937 16 C -0.105 4.105 17 C -0.129 4.129 18 C 0.171 3.829 19 N -0.606 5.606 20 C -0.267 4.267 21 H 0.054 0.946 22 C -0.046 4.046 23 N -0.929 5.929 24 Si 0.968 3.032 25 H -0.281 1.281 26 H -0.289 1.289 27 H -0.275 1.275 28 C 0.145 3.855 29 N -0.257 5.257 30 N -0.346 5.346 31 H 0.460 0.540 32 H 0.039 0.961 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.159 0.841 42 H 0.415 0.585 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.050 0.950 46 H 0.086 0.914 47 H 0.057 0.943 48 H 0.005 0.995 49 H 0.252 0.748 50 H 0.019 0.981 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.553 28.933 7.224 33.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.247 5.247 3 C -0.096 4.096 4 C -0.158 4.158 5 C -0.156 4.156 6 C 0.018 3.982 7 H 0.104 0.896 8 C -0.074 4.074 9 C -0.223 4.223 10 C -0.190 4.190 11 C 0.382 3.618 12 O -0.451 6.451 13 N -0.347 5.347 14 C 0.036 3.964 15 H 0.081 0.919 16 C -0.143 4.143 17 C -0.168 4.168 18 C 0.046 3.954 19 N -0.330 5.330 20 C -0.397 4.397 21 H 0.072 0.928 22 C -0.242 4.242 23 N -0.575 5.575 24 Si 0.795 3.205 25 H -0.207 1.207 26 H -0.215 1.215 27 H -0.200 1.200 28 C 0.018 3.982 29 N -0.095 5.095 30 N -0.062 5.062 31 H 0.308 0.692 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.176 0.824 42 H 0.252 0.748 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.068 0.932 46 H 0.105 0.895 47 H 0.075 0.925 48 H 0.023 0.977 49 H 0.062 0.938 50 H 0.036 0.964 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 15.652 27.834 7.832 32.879 hybrid contribution -1.488 0.309 -1.242 1.963 sum 14.164 28.143 6.590 32.188 Atomic orbital electron populations 1.22510 0.87264 1.01864 1.01925 1.65242 1.08993 1.16964 1.33500 1.23207 0.95558 0.88455 1.02418 1.22321 0.96254 0.97164 1.00017 1.22401 0.93437 0.97704 1.02094 1.21253 0.98414 0.85070 0.93491 0.89623 1.21146 1.01223 0.95070 0.89981 1.21621 1.07661 0.90071 1.02931 1.21628 1.07685 0.94586 0.95065 1.17292 0.77858 0.82872 0.83760 1.90792 1.43700 1.87488 1.23090 1.45786 1.59678 1.04645 1.24611 1.21339 0.95419 0.82236 0.97449 0.91871 1.21618 0.98567 0.93288 1.00791 1.22017 0.97604 0.97099 1.00078 1.20743 0.87563 0.90885 0.96258 1.44237 1.27786 1.03668 1.57336 1.19414 1.06311 0.97747 1.16227 0.92832 1.25753 1.00108 0.98392 0.99922 1.70174 1.47245 1.08317 1.31765 0.85267 0.78256 0.77691 0.79238 1.20746 1.21494 1.20007 1.21205 0.94421 0.87024 0.95568 1.73504 1.18311 1.00947 1.16755 1.43206 1.41801 1.01986 1.19215 0.69223 0.94227 0.92837 0.89998 0.88925 0.92777 0.90122 0.89574 0.89522 0.91085 0.82364 0.74821 0.89505 0.90770 0.93162 0.89544 0.92468 0.97722 0.93844 0.96351 0.95077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.41 127.69 1.20 1.35 16 2 N -0.52 -5.59 5.33 -887.03 -4.73 -10.32 16 3 C 0.03 0.20 6.49 86.45 0.56 0.76 16 4 C -0.12 -0.58 7.00 31.49 0.22 -0.36 16 5 C -0.12 -0.91 6.54 31.49 0.21 -0.71 16 6 C 0.13 1.48 2.75 44.31 0.12 1.61 16 7 H 0.09 0.98 7.90 -2.39 -0.02 0.96 16 8 C 0.05 0.94 5.79 41.40 0.24 1.18 16 9 C -0.19 -4.77 10.72 22.41 0.24 -4.53 16 10 C -0.03 -0.88 7.13 42.46 0.30 -0.58 16 11 C 0.60 21.38 7.79 86.75 0.68 22.05 16 12 O -0.57 -25.29 16.59 -3.93 -0.07 -25.36 16 13 N -0.70 -22.75 5.08 -445.15 -2.26 -25.01 16 14 C 0.14 5.44 2.60 45.07 0.12 5.56 16 15 H 0.06 2.77 7.58 -2.38 -0.02 2.76 16 16 C -0.10 -3.36 5.35 30.62 0.16 -3.20 16 17 C -0.13 -4.81 6.08 30.67 0.19 -4.62 16 18 C 0.17 8.44 5.31 86.36 0.46 8.90 16 19 N -0.61 -32.88 2.99 -699.09 -2.09 -34.98 16 20 C -0.27 -15.94 9.58 84.03 0.81 -15.13 16 21 H 0.05 3.26 7.89 -2.91 -0.02 3.24 16 22 C -0.05 -2.70 4.91 84.86 0.42 -2.28 16 23 N -0.93 -56.40 11.19 21.65 0.24 -56.16 16 24 Si 0.97 47.25 29.59 68.60 2.03 49.28 16 25 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 26 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 27 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 28 C 0.14 6.86 6.09 86.36 0.53 7.39 16 29 N -0.26 -6.11 11.92 -48.17 -0.57 -6.69 16 30 N -0.35 -5.93 6.83 -47.93 -0.33 -6.26 16 31 H 0.46 5.12 8.96 -219.99 -1.97 3.14 16 32 H 0.04 0.42 7.97 -2.38 -0.02 0.40 16 33 H 0.05 0.84 8.05 -2.39 -0.02 0.83 16 34 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.05 0.32 7.98 -2.39 -0.02 0.30 16 37 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.09 0.24 8.14 -2.38 -0.02 0.22 16 39 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 40 H 0.07 0.59 7.85 -2.39 -0.02 0.57 16 41 H 0.16 3.84 8.06 -2.91 -0.02 3.81 16 42 H 0.41 11.19 8.33 -92.71 -0.77 10.42 16 43 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 47 H 0.06 3.18 6.04 -2.39 -0.01 3.17 16 48 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 49 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 50 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.03 1.60 7.93 -2.39 -0.02 1.58 16 Total: -1.00 -75.62 406.81 -3.13 -78.76 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -1.80 Total: 19.34 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 6.44 Total: 17.40 kcal Atomic # 7 Polarization: -129.67 SS G_CDS: -9.74 Total: -139.41 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.07 Total: -25.36 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -75.62 -3.13 -78.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007372721.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.272 kcal (2) G-P(sol) polarization free energy of solvation -75.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds