Wall clock time and date at job start Wed Apr 1 2020 06:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.28607 * 124.62229 * 2 1 4 4 C 1.31378 * 108.71789 * 179.71509 * 3 2 1 5 5 C 1.39676 * 105.90136 * 0.42587 * 4 3 2 6 6 C 1.50700 * 127.04996 * 179.83857 * 5 4 3 7 7 C 1.53000 * 109.46980 * 124.70986 * 6 5 4 8 8 C 1.50700 * 109.46980 * 180.02562 * 7 6 5 9 9 O 1.21275 * 120.00279 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99897 * 180.02562 * 8 7 6 11 11 C 1.47065 * 120.84168 * 354.61048 * 10 8 7 12 12 C 1.53130 * 109.04406 * 233.40302 * 11 10 8 13 13 C 1.53143 * 109.61905 * 306.00281 * 12 11 10 14 14 C 1.52823 * 109.26455 * 60.84819 * 13 12 11 15 15 H 1.09000 * 109.47445 * 58.00889 * 14 13 12 16 16 C 1.53066 * 110.33627 * 178.54699 * 14 13 12 17 17 N 1.47069 * 108.33273 * 175.44082 * 16 14 13 18 18 C 1.36928 * 120.47048 * 126.66985 * 17 16 14 19 19 H 1.08000 * 120.00280 * 332.14047 * 18 17 16 20 20 C 1.38814 * 120.00442 * 152.14792 * 18 17 16 21 21 N 1.31623 * 119.99852 * 335.49601 * 20 18 17 22 22 Si 1.86799 * 120.00300 * 155.48678 * 20 18 17 23 23 H 1.48493 * 109.47274 * 180.02562 * 22 20 18 24 24 H 1.48504 * 109.47508 * 300.00613 * 22 20 18 25 25 H 1.48504 * 109.46707 * 60.00397 * 22 20 18 26 26 C 1.46867 * 119.06092 * 306.93772 * 17 16 14 27 27 C 1.52449 * 109.37424 * 52.23562 * 26 17 16 28 28 C 1.46709 * 120.84175 * 174.58945 * 10 8 7 29 29 H 1.08988 * 109.53159 * 245.22914 * 28 10 8 30 30 N 1.28598 * 124.62012 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47618 * 270.00555 * 1 2 3 32 32 H 1.09011 * 109.46894 * 30.00404 * 1 2 3 33 33 H 1.09001 * 109.47171 * 149.99696 * 1 2 3 34 34 H 1.08003 * 127.04675 * 180.27034 * 4 3 2 35 35 H 1.09002 * 109.46654 * 4.71508 * 6 5 4 36 36 H 1.08991 * 109.47025 * 244.71210 * 6 5 4 37 37 H 1.08997 * 109.46856 * 60.00268 * 7 6 5 38 38 H 1.08998 * 109.47060 * 300.00040 * 7 6 5 39 39 H 1.08995 * 109.54246 * 353.27701 * 11 10 8 40 40 H 1.09003 * 109.53861 * 113.45169 * 11 10 8 41 41 H 1.09003 * 109.44495 * 66.05083 * 12 11 10 42 42 H 1.09000 * 109.44905 * 185.98705 * 12 11 10 43 43 H 1.08990 * 109.50753 * 300.91204 * 13 12 11 44 44 H 1.09000 * 109.50796 * 180.78225 * 13 12 11 45 45 H 1.09002 * 109.68576 * 55.73189 * 16 14 13 46 46 H 1.08988 * 109.69729 * 295.15322 * 16 14 13 47 47 H 0.97002 * 119.99353 * 354.22531 * 21 20 18 48 48 H 1.08996 * 109.53658 * 172.28427 * 26 17 16 49 49 H 1.09006 * 109.53341 * 292.51201 * 26 17 16 50 50 H 1.09004 * 109.67478 * 186.20110 * 27 26 17 51 51 H 1.09001 * 109.22565 * 66.11454 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4591 0.6983 0.0062 5 6 3.4591 -0.6984 0.0001 6 6 4.6618 -1.6065 0.0002 7 6 4.5699 -2.5744 1.1815 8 6 5.7730 -3.4820 1.1820 9 8 6.6206 -3.3658 0.3224 10 7 5.9070 -4.4229 2.1377 11 6 4.9537 -4.5042 3.2546 12 6 5.7283 -4.4807 4.5753 13 6 6.7912 -5.5833 4.5677 14 6 7.7680 -5.3341 3.4191 15 1 8.2219 -4.3499 3.5352 16 6 8.8632 -6.4033 3.4108 17 7 9.7115 -6.1874 2.2290 18 6 11.0692 -6.0682 2.3612 19 1 11.4909 -5.6874 3.2797 20 6 11.9036 -6.4366 1.3148 21 7 11.4934 -7.3142 0.4238 22 14 13.6084 -5.6867 1.1710 23 1 14.2938 -6.2411 -0.0238 24 1 13.4909 -4.2126 1.0344 25 1 14.3954 -6.0098 2.3882 26 6 9.0813 -6.0955 0.9056 27 6 7.9664 -5.0566 0.9475 28 6 7.0071 -5.3923 2.0898 29 1 6.6039 -6.3943 1.9444 30 7 2.1955 -1.0583 0.0005 31 1 -0.3634 0.0001 1.0276 32 1 -0.3633 0.8900 -0.5140 33 1 -0.3633 -0.8900 -0.5139 34 1 4.3211 1.3490 0.0119 35 1 5.5685 -1.0083 0.0903 36 1 4.6903 -2.1716 -0.9313 37 1 3.6632 -3.1725 1.0915 38 1 4.5414 -2.0091 2.1131 39 1 4.2733 -3.6536 3.2158 40 1 4.3840 -5.4306 3.1810 41 1 6.2119 -3.5112 4.6952 42 1 5.0392 -4.6473 5.4033 43 1 6.3099 -6.5518 4.4325 44 1 7.3321 -5.5739 5.5140 45 1 8.4095 -7.3932 3.3614 46 1 9.4653 -6.3195 4.3153 47 1 10.6433 -7.7658 0.5436 48 1 9.8264 -5.8007 0.1667 49 1 8.6606 -7.0637 0.6342 50 1 7.4239 -5.0622 0.0020 51 1 8.4005 -4.0706 1.1134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021667765.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:10:36 Heat of formation + Delta-G solvation = 77.814585 kcal Electronic energy + Delta-G solvation = -31452.491593 eV Core-core repulsion = 27389.311858 eV Total energy + Delta-G solvation = -4063.179735 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.51612 -41.77744 -39.36427 -37.57159 -35.93544 -34.72344 -34.08686 -33.83348 -32.73817 -31.60270 -31.02437 -28.71832 -27.07053 -26.57972 -25.34567 -24.08495 -23.82061 -23.27376 -21.82748 -21.47081 -21.04562 -19.84843 -19.36640 -18.28806 -17.80899 -17.55495 -17.05538 -16.84701 -16.12657 -15.93106 -15.71356 -15.54514 -15.49835 -15.34975 -15.06921 -14.91612 -14.51572 -14.06574 -13.95793 -13.83859 -13.68862 -13.62949 -13.47386 -13.32774 -12.98628 -12.78783 -12.65192 -12.57933 -12.29935 -12.15584 -11.98392 -11.92961 -11.90591 -11.79564 -11.76635 -11.60434 -11.46669 -11.23864 -11.12568 -10.48208 -10.18722 -10.00930 -9.49475 -8.91825 -8.25094 -5.41159 0.80526 1.40273 1.52540 1.54749 1.64072 1.69076 1.82281 2.02634 2.64121 3.12807 3.20169 3.47761 3.51230 3.76767 3.78892 3.80777 3.94685 4.08919 4.15360 4.18165 4.24541 4.27113 4.32778 4.37428 4.43457 4.46939 4.50054 4.58606 4.60071 4.62762 4.74363 4.79102 4.82613 4.84267 4.86400 4.92736 5.04114 5.07867 5.10759 5.16622 5.18193 5.23211 5.30925 5.34165 5.40782 5.54555 5.67042 5.78333 5.81072 6.37862 6.53371 7.05099 7.27640 7.33371 7.76561 8.21288 8.98913 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015850 B = 0.002447 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.189919 B =11440.851663 C =12568.350924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.161 5.161 3 N -0.309 5.309 4 C -0.028 4.028 5 C -0.002 4.002 6 C -0.008 4.008 7 C -0.116 4.116 8 C 0.504 3.496 9 O -0.571 6.571 10 N -0.610 5.610 11 C 0.102 3.898 12 C -0.126 4.126 13 C -0.108 4.108 14 C -0.100 4.100 15 H 0.047 0.953 16 C 0.153 3.847 17 N -0.619 5.619 18 C -0.356 4.356 19 H 0.050 0.950 20 C -0.078 4.078 21 N -0.942 5.942 22 Si 1.114 2.886 23 H -0.290 1.290 24 H -0.284 1.284 25 H -0.271 1.271 26 C 0.154 3.846 27 C -0.093 4.093 28 C 0.166 3.834 29 H 0.064 0.936 30 N -0.301 5.301 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.219 0.781 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.108 0.892 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.021 0.979 46 H 0.053 0.947 47 H 0.253 0.747 48 H 0.038 0.962 49 H 0.000 1.000 50 H 0.067 0.933 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.676 13.612 6.469 30.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.063 5.063 3 N -0.151 5.151 4 C -0.209 4.209 5 C -0.164 4.164 6 C -0.048 4.048 7 C -0.156 4.156 8 C 0.294 3.706 9 O -0.450 6.450 10 N -0.342 5.342 11 C -0.019 4.019 12 C -0.164 4.164 13 C -0.146 4.146 14 C -0.121 4.121 15 H 0.065 0.935 16 C 0.028 3.972 17 N -0.344 5.344 18 C -0.485 4.485 19 H 0.068 0.932 20 C -0.274 4.274 21 N -0.584 5.584 22 Si 0.938 3.062 23 H -0.216 1.216 24 H -0.211 1.211 25 H -0.196 1.196 26 C 0.027 3.973 27 C -0.132 4.132 28 C 0.062 3.938 29 H 0.082 0.918 30 N -0.144 5.144 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.235 0.765 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.126 0.874 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.039 0.961 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.056 0.944 49 H 0.018 0.982 50 H 0.086 0.914 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -26.319 13.758 5.096 30.132 hybrid contribution 0.069 -0.424 0.615 0.750 sum -26.250 13.334 5.711 29.991 Atomic orbital electron populations 1.22537 0.68004 1.07217 1.06509 1.48414 1.10145 0.98787 1.48985 1.74035 1.04478 1.16740 1.19858 1.25114 0.94982 0.94908 1.05883 1.23196 0.92437 0.94528 1.06211 1.19524 0.91890 0.94808 0.98595 1.21583 0.95897 0.97029 1.01107 1.21286 0.88016 0.80779 0.80529 1.90786 1.43992 1.70586 1.39669 1.48324 1.28584 1.31491 1.25814 1.22067 0.90825 1.04530 0.84470 1.21889 0.98114 0.98638 0.97768 1.21498 0.96282 0.99843 0.97009 1.21845 0.95947 0.98982 0.95300 0.93477 1.21043 0.91462 0.95161 0.89537 1.44397 1.02893 1.84645 1.02430 1.20205 0.83394 1.40531 1.04405 0.93197 1.27238 1.07292 0.96827 0.96091 1.70891 1.23072 1.24072 1.40359 0.82884 0.71598 0.75354 0.76373 1.21621 1.21080 1.19603 1.20803 0.93922 0.94785 0.87767 1.21998 0.95484 0.97654 0.98090 1.20909 0.86321 0.91321 0.95226 0.91772 1.73947 1.03974 1.16336 1.20177 0.87547 0.86555 0.86690 0.76470 0.88779 0.90686 0.87234 0.87041 0.87174 0.89799 0.92277 0.87386 0.90898 0.90972 0.96138 0.92845 0.93696 0.94368 0.98179 0.91436 0.93949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.62 11.57 127.77 1.48 2.10 16 2 N -0.16 -2.77 4.35 -206.56 -0.90 -3.67 16 3 N -0.31 -6.05 12.05 -56.86 -0.69 -6.74 16 4 C -0.03 -0.50 12.15 85.11 1.03 0.53 16 5 C 0.00 -0.04 6.61 42.97 0.28 0.25 16 6 C -0.01 -0.17 5.10 29.85 0.15 -0.02 16 7 C -0.12 -2.17 4.10 29.85 0.12 -2.04 16 8 C 0.50 14.19 7.63 87.66 0.67 14.86 16 9 O -0.57 -21.45 11.55 -3.02 -0.03 -21.48 16 10 N -0.61 -16.26 2.97 -795.36 -2.36 -18.62 16 11 C 0.10 1.68 6.33 86.31 0.55 2.23 16 12 C -0.13 -2.07 6.07 30.69 0.19 -1.89 16 13 C -0.11 -2.49 5.24 30.58 0.16 -2.33 16 14 C -0.10 -3.41 2.21 -10.74 -0.02 -3.43 16 15 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 16 C 0.15 6.57 5.86 86.29 0.51 7.07 16 17 N -0.62 -33.21 2.86 -700.57 -2.00 -35.22 16 18 C -0.36 -21.05 9.48 84.04 0.80 -20.26 16 19 H 0.05 2.93 7.94 -2.91 -0.02 2.91 16 20 C -0.08 -4.71 4.68 84.86 0.40 -4.31 16 21 N -0.94 -60.51 12.43 21.65 0.27 -60.24 16 22 Si 1.11 53.75 29.98 68.60 2.06 55.80 16 23 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 24 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 26 C 0.15 8.09 4.64 86.13 0.40 8.49 16 27 C -0.09 -4.13 3.76 30.38 0.11 -4.02 16 28 C 0.17 5.76 2.64 45.01 0.12 5.88 16 29 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 30 N -0.30 -6.04 12.04 -47.25 -0.57 -6.61 16 31 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.12 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.22 2.68 8.06 -2.91 -0.02 2.65 16 35 H 0.09 1.90 8.09 -2.39 -0.02 1.88 16 36 H 0.07 1.75 8.10 -2.39 -0.02 1.73 16 37 H 0.11 1.78 8.12 -2.39 -0.02 1.76 16 38 H 0.11 1.63 7.48 -2.39 -0.02 1.61 16 39 H 0.11 1.21 6.00 -2.39 -0.01 1.19 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.05 2.28 7.93 -2.39 -0.02 2.26 16 47 H 0.25 16.59 6.65 -92.71 -0.62 15.97 16 48 H 0.04 2.30 6.34 -2.39 -0.02 2.28 16 49 H 0.00 0.02 7.81 -2.38 -0.02 0.00 16 50 H 0.07 3.05 6.47 -2.39 -0.02 3.03 16 51 H 0.04 2.09 7.15 -2.39 -0.02 2.07 16 Total: -1.00 -82.89 393.30 3.78 -79.11 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 1.07 Total: 14.56 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 6.94 Total: 3.11 kcal Atomic # 7 Polarization: -124.85 SS G_CDS: -6.25 Total: -131.10 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.03 Total: -21.48 kcal Atomic # 14 Polarization: 53.75 SS G_CDS: 2.06 Total: 55.80 kcal Total: -82.89 3.78 -79.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021667765.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.923 kcal (2) G-P(sol) polarization free energy of solvation -82.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds