Wall clock time and date at job start Wed Apr 1 2020 05:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35316 * 125.86283 * 2 1 4 4 C 1.35351 * 106.16821 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.74720 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47034 * 125.01706 * 5 4 3 7 7 C 1.50701 * 109.47034 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00365 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99858 * 179.97438 * 7 6 5 10 10 C 1.46939 * 120.84691 * 359.97438 * 9 7 6 11 11 C 1.53140 * 109.02325 * 234.00170 * 10 9 7 12 12 C 1.53110 * 109.47685 * 305.92158 * 11 10 9 13 13 C 1.52848 * 109.35126 * 60.64791 * 12 11 10 14 14 H 1.09003 * 109.25278 * 57.52536 * 13 12 11 15 15 C 1.52768 * 110.20989 * 177.56991 * 13 12 11 16 16 N 1.46891 * 109.19693 * 67.36382 * 15 13 12 17 17 C 1.36940 * 120.77598 * 233.32312 * 16 15 13 18 18 H 1.07994 * 120.00068 * 151.95724 * 17 16 15 19 19 C 1.38816 * 119.99726 * 331.96796 * 17 16 15 20 20 N 1.31619 * 120.00182 * 343.13166 * 19 17 16 21 21 Si 1.86799 * 120.00033 * 163.13942 * 19 17 16 22 22 H 1.48502 * 109.47301 * 89.99127 * 21 19 17 23 23 H 1.48496 * 109.47320 * 209.99367 * 21 19 17 24 24 H 1.48505 * 109.46899 * 329.99956 * 21 19 17 25 25 C 1.46970 * 118.44758 * 53.34620 * 16 15 13 26 26 C 1.53092 * 108.62063 * 305.67708 * 25 16 15 27 27 C 1.47308 * 120.84295 * 179.71547 * 9 7 6 28 28 H 1.09003 * 110.07284 * 4.95256 * 27 9 7 29 29 N 1.33771 * 106.50107 * 359.97438 * 4 3 2 30 30 N 1.28631 * 108.88198 * 0.02562 * 29 4 3 31 31 H 1.08999 * 109.47374 * 270.00347 * 1 2 3 32 32 H 1.08999 * 109.47434 * 30.00249 * 1 2 3 33 33 H 1.09000 * 109.47121 * 150.00155 * 1 2 3 34 34 H 1.07998 * 126.91466 * 0.06220 * 3 2 1 35 35 H 1.09001 * 109.47426 * 245.01195 * 5 4 3 36 36 H 1.08994 * 109.47708 * 5.01494 * 5 4 3 37 37 H 1.08999 * 109.47048 * 299.99735 * 6 5 4 38 38 H 1.08995 * 109.47444 * 59.99743 * 6 5 4 39 39 H 1.09008 * 109.54563 * 353.86645 * 10 9 7 40 40 H 1.08998 * 109.54603 * 114.13694 * 10 9 7 41 41 H 1.08999 * 109.47104 * 65.92279 * 11 10 9 42 42 H 1.09000 * 109.47166 * 185.91678 * 11 10 9 43 43 H 1.09007 * 109.48956 * 180.61503 * 12 11 10 44 44 H 1.09000 * 109.49404 * 300.68352 * 12 11 10 45 45 H 1.08998 * 109.51704 * 187.28327 * 15 13 12 46 46 H 1.09007 * 109.51725 * 307.39245 * 15 13 12 47 47 H 0.96996 * 119.99848 * 180.02562 * 20 19 17 48 48 H 1.08993 * 109.61492 * 65.42286 * 25 16 15 49 49 H 1.09007 * 109.61315 * 185.94347 * 25 16 15 50 50 H 1.08993 * 109.45344 * 175.38405 * 26 25 16 51 51 H 1.09001 * 109.45547 * 295.34109 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2577 1.0966 0.0000 4 6 3.5321 0.6405 -0.0006 5 6 4.7879 1.4735 -0.0014 6 6 5.6711 1.0659 1.1796 7 6 6.9272 1.8985 1.1785 8 8 7.0994 2.7352 0.3176 9 7 7.8593 1.7133 2.1343 10 6 7.6696 0.7052 3.1864 11 6 7.8268 1.3757 4.5542 12 6 9.1701 2.1081 4.6124 13 6 9.2093 3.1813 3.5248 14 1 8.3720 3.8651 3.6642 15 6 10.5182 3.9652 3.6038 16 7 11.6335 3.0807 3.2410 17 6 12.7128 2.9373 4.0715 18 1 13.2803 2.0185 4.0657 19 6 13.0773 3.9729 4.9210 20 7 12.6200 5.1890 4.7102 21 14 14.2169 3.6407 6.3633 22 1 15.6262 3.8283 5.9341 23 1 13.9060 4.5838 7.4674 24 1 14.0248 2.2457 6.8348 25 6 11.5642 2.3538 1.9655 26 6 10.2523 1.5659 1.9226 27 6 9.0967 2.5124 2.1473 28 1 9.0613 3.2697 1.3641 29 7 3.4576 -0.6951 -0.0003 30 7 2.2192 -1.0430 -0.0002 31 1 -0.3634 0.0001 1.0276 32 1 -0.3634 0.8899 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 1.9380 2.1282 0.0009 35 1 5.3302 1.3125 -0.9331 36 1 4.5249 2.5275 0.0884 37 1 5.1288 1.2269 2.1114 38 1 5.9341 0.0119 1.0899 39 1 6.6714 0.2750 3.1036 40 1 8.4170 -0.0807 3.0775 41 1 7.0169 2.0896 4.7041 42 1 7.7921 0.6176 5.3366 43 1 9.2870 2.5763 5.5898 44 1 9.9797 1.3965 4.4505 45 1 10.4809 4.8068 2.9121 46 1 10.6608 4.3345 4.6194 47 1 12.8750 5.9126 5.3036 48 1 11.5924 3.0628 1.1382 49 1 12.4065 1.6660 1.8901 50 1 10.1482 1.0868 0.9492 51 1 10.2602 0.8047 2.7028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021753172.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:57 Heat of formation + Delta-G solvation = 82.303981 kcal Electronic energy + Delta-G solvation = -31306.471481 eV Core-core repulsion = 27243.486421 eV Total energy + Delta-G solvation = -4062.985060 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.54413 -40.35181 -38.16132 -35.51295 -35.41911 -33.71402 -32.58598 -32.51907 -30.62376 -30.08011 -29.35083 -28.27999 -25.79429 -25.49458 -24.20695 -22.40183 -22.36448 -21.95929 -21.42500 -20.95760 -18.87672 -17.79778 -17.62626 -16.97844 -16.89405 -16.56519 -15.66378 -15.57332 -15.05052 -15.01972 -14.45423 -14.31615 -13.99246 -13.83801 -13.60791 -13.51124 -13.29508 -13.07165 -12.83200 -12.82764 -12.48035 -12.30905 -12.15546 -12.09103 -11.81588 -11.52791 -11.46559 -11.09025 -10.93477 -10.86859 -10.71017 -10.59513 -10.41433 -10.36743 -10.07084 -10.04138 -9.93532 -9.67582 -9.54328 -9.43840 -9.25026 -8.47449 -8.17968 -6.64044 -5.77109 -3.18985 1.26258 2.00362 2.24384 2.86452 3.24735 3.38168 3.45375 3.47089 3.94528 4.18746 4.44512 4.46643 4.50881 4.69273 4.73796 4.82522 4.96812 5.04446 5.12481 5.21559 5.27614 5.36973 5.41399 5.46609 5.51369 5.53110 5.64294 5.76906 5.78624 5.84462 5.91351 5.94321 6.04498 6.12949 6.15711 6.20529 6.28241 6.36502 6.48501 6.53645 6.61118 6.73084 6.82425 6.96963 7.00874 7.08107 7.35218 7.64101 7.75259 7.81662 8.21481 8.42261 8.46721 9.22986 9.86394 10.44185 11.31544 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.029352 B = 0.002093 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.697835 B =13374.376721 C =13600.888882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.297 5.297 3 C -0.050 4.050 4 C -0.014 4.014 5 C -0.016 4.016 6 C -0.132 4.132 7 C 0.513 3.487 8 O -0.549 6.549 9 N -0.607 5.607 10 C 0.107 3.893 11 C -0.135 4.135 12 C -0.104 4.104 13 C -0.114 4.114 14 H 0.056 0.944 15 C 0.177 3.823 16 N -0.588 5.588 17 C -0.248 4.248 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.899 3.101 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.146 3.854 26 C -0.142 4.142 27 C 0.156 3.844 28 H 0.094 0.906 29 N -0.263 5.263 30 N -0.089 5.089 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.191 0.809 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.019 0.981 46 H 0.091 0.909 47 H 0.253 0.747 48 H 0.020 0.980 49 H 0.056 0.944 50 H 0.051 0.949 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.645 -8.738 -5.907 26.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.091 5.091 3 C -0.200 4.200 4 C -0.152 4.152 5 C -0.056 4.056 6 C -0.173 4.173 7 C 0.301 3.699 8 O -0.428 6.428 9 N -0.339 5.339 10 C -0.016 4.016 11 C -0.173 4.173 12 C -0.141 4.141 13 C -0.135 4.135 14 H 0.075 0.925 15 C 0.051 3.949 16 N -0.311 5.311 17 C -0.378 4.378 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.729 3.271 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.019 3.981 26 C -0.182 4.182 27 C 0.055 3.945 28 H 0.112 0.888 29 N -0.130 5.130 30 N -0.068 5.068 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.208 0.792 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.037 0.963 46 H 0.109 0.891 47 H 0.063 0.937 48 H 0.038 0.962 49 H 0.074 0.926 50 H 0.070 0.930 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.518 -9.698 -6.261 27.100 hybrid contribution 0.198 1.052 0.904 1.402 sum -24.320 -8.646 -5.357 26.361 Atomic orbital electron populations 1.22260 0.72782 1.05903 1.05023 1.47234 1.09382 1.05008 1.47447 1.23438 0.90879 0.94747 1.10936 1.22099 0.95427 0.91454 1.06237 1.19621 0.89255 0.97358 0.99357 1.21601 0.94299 1.01349 1.00019 1.20543 0.84566 0.83663 0.81141 1.90678 1.78872 1.35802 1.37415 1.48620 1.20112 1.38071 1.27104 1.21695 1.01537 0.90831 0.87503 1.21963 0.99503 0.99958 0.95861 1.21431 0.95646 0.98284 0.98775 1.22087 1.00988 0.97309 0.93150 0.92516 1.20697 0.82435 0.89927 1.01875 1.44022 1.18463 1.51572 1.17021 1.19126 1.06105 0.97451 1.15107 0.91759 1.25030 0.98876 0.94673 1.01017 1.70026 1.47755 0.98996 1.37892 0.86346 0.80659 0.77443 0.82617 1.21465 1.21649 1.20529 1.20875 0.93853 0.94127 0.89214 1.22030 0.96800 0.98907 1.00432 1.21080 0.81526 0.93116 0.98812 0.88824 1.75062 1.09300 1.12121 1.16552 1.78312 0.96518 1.12156 1.19824 0.89056 0.88285 0.88070 0.79174 0.89203 0.89317 0.89261 0.88339 0.90474 0.91289 0.92251 0.91388 0.92158 0.90514 0.96284 0.89118 0.93668 0.96239 0.92574 0.93021 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.19 11.39 59.85 0.68 0.87 16 2 N -0.30 -2.30 3.74 -68.06 -0.25 -2.55 16 3 C -0.05 -0.38 11.54 -17.04 -0.20 -0.57 16 4 C -0.01 -0.15 6.50 -82.78 -0.54 -0.69 16 5 C -0.02 -0.17 5.08 -27.88 -0.14 -0.31 16 6 C -0.13 -1.47 4.03 -27.88 -0.11 -1.59 16 7 C 0.51 7.65 7.71 -10.98 -0.08 7.56 16 8 O -0.55 -10.06 15.43 5.56 0.09 -9.98 16 9 N -0.61 -9.11 2.62 -165.85 -0.43 -9.54 16 10 C 0.11 1.33 5.84 -3.73 -0.02 1.30 16 11 C -0.13 -1.75 6.08 -26.60 -0.16 -1.91 16 12 C -0.10 -1.76 4.86 -26.75 -0.13 -1.89 16 13 C -0.11 -2.15 2.52 -90.54 -0.23 -2.38 16 14 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 15 C 0.18 4.14 4.68 -3.95 -0.02 4.12 16 16 N -0.59 -14.30 2.63 -172.63 -0.45 -14.75 16 17 C -0.25 -6.62 9.60 -15.06 -0.14 -6.77 16 18 H 0.06 1.69 7.88 -52.49 -0.41 1.28 16 19 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 20 N -0.90 -25.86 11.19 55.49 0.62 -25.24 16 21 Si 0.90 21.40 29.59 -169.99 -5.03 16.37 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.15 3.08 6.50 -3.74 -0.02 3.05 16 26 C -0.14 -2.53 4.92 -27.66 -0.14 -2.66 16 27 C 0.16 2.79 2.57 -68.19 -0.18 2.62 16 28 H 0.09 1.90 7.06 -51.93 -0.37 1.53 16 29 N -0.26 -3.36 12.40 33.29 0.41 -2.95 16 30 N -0.09 -1.02 13.16 60.35 0.79 -0.23 16 31 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 32 H 0.10 -0.01 8.14 -51.93 -0.42 -0.44 16 33 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.19 0.74 8.06 -52.49 -0.42 0.31 16 35 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 36 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 37 H 0.09 0.88 7.71 -51.93 -0.40 0.48 16 38 H 0.10 1.08 7.94 -51.93 -0.41 0.67 16 39 H 0.08 0.77 5.96 -51.92 -0.31 0.46 16 40 H 0.07 0.85 7.18 -51.93 -0.37 0.48 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.08 1.43 6.17 -51.93 -0.32 1.11 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.09 2.36 6.07 -51.92 -0.31 2.05 16 47 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.06 1.15 7.94 -51.92 -0.41 0.74 16 50 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 51 H 0.07 1.16 5.25 -51.93 -0.27 0.88 16 LS Contribution 393.96 15.07 5.94 5.94 Total: -1.00 -34.09 393.96 -8.06 -42.15 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -8.22 Total: 0.02 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -1.52 Total: 0.75 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 0.69 Total: -55.25 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.09 -8.06 -42.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021753172.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.456 kcal (2) G-P(sol) polarization free energy of solvation -34.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds