Wall clock time and date at job start Wed Apr 1 2020 05:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35316 * 125.86283 * 2 1 4 4 C 1.35351 * 106.16821 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.74720 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47034 * 125.01706 * 5 4 3 7 7 C 1.50701 * 109.47034 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00365 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99858 * 179.97438 * 7 6 5 10 10 C 1.46939 * 120.84691 * 359.97438 * 9 7 6 11 11 C 1.53140 * 109.02325 * 234.00170 * 10 9 7 12 12 C 1.53110 * 109.47685 * 305.92158 * 11 10 9 13 13 C 1.52848 * 109.35126 * 60.64791 * 12 11 10 14 14 H 1.09003 * 109.25278 * 57.52536 * 13 12 11 15 15 C 1.52768 * 110.20989 * 177.56991 * 13 12 11 16 16 N 1.46891 * 109.19693 * 67.36382 * 15 13 12 17 17 C 1.36940 * 120.77598 * 233.32312 * 16 15 13 18 18 H 1.07994 * 120.00068 * 151.95724 * 17 16 15 19 19 C 1.38816 * 119.99726 * 331.96796 * 17 16 15 20 20 N 1.31619 * 120.00182 * 343.13166 * 19 17 16 21 21 Si 1.86799 * 120.00033 * 163.13942 * 19 17 16 22 22 H 1.48502 * 109.47301 * 89.99127 * 21 19 17 23 23 H 1.48496 * 109.47320 * 209.99367 * 21 19 17 24 24 H 1.48505 * 109.46899 * 329.99956 * 21 19 17 25 25 C 1.46970 * 118.44758 * 53.34620 * 16 15 13 26 26 C 1.53092 * 108.62063 * 305.67708 * 25 16 15 27 27 C 1.47308 * 120.84295 * 179.71547 * 9 7 6 28 28 H 1.09003 * 110.07284 * 4.95256 * 27 9 7 29 29 N 1.33771 * 106.50107 * 359.97438 * 4 3 2 30 30 N 1.28631 * 108.88198 * 0.02562 * 29 4 3 31 31 H 1.08999 * 109.47374 * 270.00347 * 1 2 3 32 32 H 1.08999 * 109.47434 * 30.00249 * 1 2 3 33 33 H 1.09000 * 109.47121 * 150.00155 * 1 2 3 34 34 H 1.07998 * 126.91466 * 0.06220 * 3 2 1 35 35 H 1.09001 * 109.47426 * 245.01195 * 5 4 3 36 36 H 1.08994 * 109.47708 * 5.01494 * 5 4 3 37 37 H 1.08999 * 109.47048 * 299.99735 * 6 5 4 38 38 H 1.08995 * 109.47444 * 59.99743 * 6 5 4 39 39 H 1.09008 * 109.54563 * 353.86645 * 10 9 7 40 40 H 1.08998 * 109.54603 * 114.13694 * 10 9 7 41 41 H 1.08999 * 109.47104 * 65.92279 * 11 10 9 42 42 H 1.09000 * 109.47166 * 185.91678 * 11 10 9 43 43 H 1.09007 * 109.48956 * 180.61503 * 12 11 10 44 44 H 1.09000 * 109.49404 * 300.68352 * 12 11 10 45 45 H 1.08998 * 109.51704 * 187.28327 * 15 13 12 46 46 H 1.09007 * 109.51725 * 307.39245 * 15 13 12 47 47 H 0.96996 * 119.99848 * 180.02562 * 20 19 17 48 48 H 1.08993 * 109.61492 * 65.42286 * 25 16 15 49 49 H 1.09007 * 109.61315 * 185.94347 * 25 16 15 50 50 H 1.08993 * 109.45344 * 175.38405 * 26 25 16 51 51 H 1.09001 * 109.45547 * 295.34109 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2577 1.0966 0.0000 4 6 3.5321 0.6405 -0.0006 5 6 4.7879 1.4735 -0.0014 6 6 5.6711 1.0659 1.1796 7 6 6.9272 1.8985 1.1785 8 8 7.0994 2.7352 0.3176 9 7 7.8593 1.7133 2.1343 10 6 7.6696 0.7052 3.1864 11 6 7.8268 1.3757 4.5542 12 6 9.1701 2.1081 4.6124 13 6 9.2093 3.1813 3.5248 14 1 8.3720 3.8651 3.6642 15 6 10.5182 3.9652 3.6038 16 7 11.6335 3.0807 3.2410 17 6 12.7128 2.9373 4.0715 18 1 13.2803 2.0185 4.0657 19 6 13.0773 3.9729 4.9210 20 7 12.6200 5.1890 4.7102 21 14 14.2169 3.6407 6.3633 22 1 15.6262 3.8283 5.9341 23 1 13.9060 4.5838 7.4674 24 1 14.0248 2.2457 6.8348 25 6 11.5642 2.3538 1.9655 26 6 10.2523 1.5659 1.9226 27 6 9.0967 2.5124 2.1473 28 1 9.0613 3.2697 1.3641 29 7 3.4576 -0.6951 -0.0003 30 7 2.2192 -1.0430 -0.0002 31 1 -0.3634 0.0001 1.0276 32 1 -0.3634 0.8899 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 1.9380 2.1282 0.0009 35 1 5.3302 1.3125 -0.9331 36 1 4.5249 2.5275 0.0884 37 1 5.1288 1.2269 2.1114 38 1 5.9341 0.0119 1.0899 39 1 6.6714 0.2750 3.1036 40 1 8.4170 -0.0807 3.0775 41 1 7.0169 2.0896 4.7041 42 1 7.7921 0.6176 5.3366 43 1 9.2870 2.5763 5.5898 44 1 9.9797 1.3965 4.4505 45 1 10.4809 4.8068 2.9121 46 1 10.6608 4.3345 4.6194 47 1 12.8750 5.9126 5.3036 48 1 11.5924 3.0628 1.1382 49 1 12.4065 1.6660 1.8901 50 1 10.1482 1.0868 0.9492 51 1 10.2602 0.8047 2.7028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021753172.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:56 Heat of formation + Delta-G solvation = 60.874672 kcal Electronic energy + Delta-G solvation = -31307.400726 eV Core-core repulsion = 27243.486421 eV Total energy + Delta-G solvation = -4063.914305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.18564 -41.66746 -39.56628 -37.06213 -36.08757 -34.61093 -34.16402 -33.93760 -32.00355 -31.31373 -30.79668 -28.68916 -27.39054 -26.73418 -25.55326 -23.81890 -23.50207 -22.99198 -22.80314 -21.85100 -20.19359 -19.35554 -18.51491 -18.30615 -17.67927 -17.53177 -16.95307 -16.83293 -16.64862 -16.01244 -15.69573 -15.53263 -15.27081 -15.04522 -14.84240 -14.56595 -14.25201 -14.24880 -13.96358 -13.85715 -13.75455 -13.53552 -13.50524 -13.15351 -13.01468 -12.89379 -12.58096 -12.55811 -12.48112 -12.27449 -12.18090 -11.96387 -11.82972 -11.74117 -11.62482 -11.42115 -11.30895 -11.04366 -10.95772 -10.66105 -10.50920 -10.09719 -9.49481 -8.66186 -7.84903 -5.30090 0.67748 1.47965 1.49462 1.49660 1.59041 1.61296 1.70238 2.07239 2.53008 3.30881 3.33410 3.59359 3.67313 3.77747 3.86014 4.00383 4.01720 4.07903 4.14128 4.18548 4.23543 4.28515 4.37160 4.40068 4.42833 4.50424 4.58948 4.65038 4.67484 4.74647 4.75607 4.79550 4.90825 4.98157 5.01915 5.05173 5.07795 5.14507 5.16136 5.18164 5.25055 5.28340 5.33659 5.47352 5.62006 5.65242 5.69852 5.72358 5.73294 6.40734 6.56343 7.16320 7.24431 7.53486 7.86338 8.40629 9.22053 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.029352 B = 0.002093 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.697835 B =13374.376721 C =13600.888882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.289 5.289 3 C -0.032 4.032 4 C -0.036 4.036 5 C -0.009 4.009 6 C -0.118 4.118 7 C 0.510 3.490 8 O -0.589 6.589 9 N -0.607 5.607 10 C 0.105 3.895 11 C -0.125 4.125 12 C -0.098 4.098 13 C -0.103 4.103 14 H 0.057 0.943 15 C 0.187 3.813 16 N -0.601 5.601 17 C -0.253 4.253 18 H 0.069 0.931 19 C -0.051 4.051 20 N -0.937 5.937 21 Si 0.965 3.035 22 H -0.288 1.288 23 H -0.295 1.295 24 H -0.267 1.267 25 C 0.142 3.858 26 C -0.125 4.125 27 C 0.164 3.836 28 H 0.064 0.936 29 N -0.301 5.301 30 N -0.123 5.123 31 H 0.108 0.892 32 H 0.130 0.870 33 H 0.105 0.895 34 H 0.231 0.769 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.046 0.954 44 H 0.061 0.939 45 H -0.016 1.016 46 H 0.060 0.940 47 H 0.249 0.751 48 H 0.006 0.994 49 H 0.061 0.939 50 H 0.065 0.935 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.421 -10.608 -5.175 29.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.082 5.082 3 C -0.183 4.183 4 C -0.175 4.175 5 C -0.049 4.049 6 C -0.158 4.158 7 C 0.301 3.699 8 O -0.470 6.470 9 N -0.338 5.338 10 C -0.017 4.017 11 C -0.162 4.162 12 C -0.136 4.136 13 C -0.124 4.124 14 H 0.075 0.925 15 C 0.061 3.939 16 N -0.324 5.324 17 C -0.384 4.384 18 H 0.086 0.914 19 C -0.246 4.246 20 N -0.583 5.583 21 Si 0.793 3.207 22 H -0.215 1.215 23 H -0.221 1.221 24 H -0.192 1.192 25 C 0.016 3.984 26 C -0.165 4.165 27 C 0.061 3.939 28 H 0.082 0.918 29 N -0.167 5.167 30 N -0.103 5.103 31 H 0.126 0.874 32 H 0.148 0.852 33 H 0.123 0.877 34 H 0.247 0.753 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.130 0.870 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.114 0.886 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.002 0.998 46 H 0.079 0.921 47 H 0.058 0.942 48 H 0.024 0.976 49 H 0.080 0.920 50 H 0.084 0.916 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -27.336 -11.641 -5.532 30.222 hybrid contribution 1.005 1.700 0.590 2.061 sum -26.331 -9.940 -4.942 28.576 Atomic orbital electron populations 1.22736 0.69833 1.07722 1.06699 1.47653 1.11010 1.04254 1.45328 1.24001 0.89888 0.96208 1.08247 1.22145 0.96397 0.90977 1.07976 1.19496 0.89299 0.97901 0.98203 1.21552 0.92302 1.00554 1.01417 1.21240 0.85279 0.83291 0.80137 1.90666 1.79724 1.37655 1.38921 1.48598 1.18953 1.38140 1.28110 1.21952 1.03823 0.89989 0.85942 1.21904 0.96695 1.00410 0.97241 1.21336 0.97965 0.97328 0.96940 1.21860 0.97944 0.97649 0.94972 0.92462 1.20444 0.84831 0.89723 0.98933 1.44215 1.18331 1.51756 1.18069 1.19452 1.06334 0.97393 1.15178 0.91359 1.25781 1.00817 0.94449 1.03523 1.70196 1.49514 0.99800 1.38818 0.85317 0.78498 0.77575 0.79296 1.21473 1.22095 1.19220 1.20994 0.96109 0.93935 0.87345 1.21828 0.94677 0.98406 1.01550 1.20666 0.83403 0.92938 0.96932 0.91759 1.74986 1.10352 1.13496 1.17915 1.78225 0.96628 1.13689 1.21720 0.87380 0.85202 0.87660 0.75305 0.91076 0.88509 0.87005 0.87727 0.87036 0.90626 0.91502 0.88586 0.93501 0.92048 0.99831 0.92135 0.94220 0.97607 0.92039 0.91597 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.10 11.39 127.77 1.46 1.55 16 2 N -0.29 -3.69 3.74 -369.23 -1.38 -5.08 16 3 C -0.03 -0.38 11.54 83.49 0.96 0.58 16 4 C -0.04 -0.68 6.50 41.60 0.27 -0.41 16 5 C -0.01 -0.18 5.08 29.85 0.15 -0.03 16 6 C -0.12 -2.34 4.03 29.85 0.12 -2.22 16 7 C 0.51 14.49 7.71 87.66 0.68 15.17 16 8 O -0.59 -21.56 15.43 -3.03 -0.05 -21.61 16 9 N -0.61 -17.15 2.62 -797.03 -2.09 -19.24 16 10 C 0.10 2.21 5.84 86.34 0.50 2.71 16 11 C -0.12 -2.82 6.08 30.68 0.19 -2.64 16 12 C -0.10 -3.23 4.86 30.58 0.15 -3.08 16 13 C -0.10 -3.95 2.52 -10.74 -0.03 -3.98 16 14 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 15 C 0.19 9.22 4.68 86.23 0.40 9.62 16 16 N -0.60 -30.12 2.63 -700.07 -1.84 -31.95 16 17 C -0.25 -13.76 9.60 84.03 0.81 -12.95 16 18 H 0.07 3.59 7.88 -2.91 -0.02 3.57 16 19 C -0.05 -2.82 4.92 84.86 0.42 -2.40 16 20 N -0.94 -55.85 11.19 21.65 0.24 -55.61 16 21 Si 0.96 44.68 29.59 68.60 2.03 46.71 16 22 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 23 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 25 C 0.14 6.10 6.50 86.32 0.56 6.66 16 26 C -0.13 -4.38 4.92 29.99 0.15 -4.24 16 27 C 0.16 5.87 2.57 44.38 0.11 5.98 16 28 H 0.06 2.70 7.06 -2.39 -0.02 2.69 16 29 N -0.30 -7.34 12.40 -48.60 -0.60 -7.94 16 30 N -0.12 -2.67 13.16 37.02 0.49 -2.19 16 31 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.13 -0.60 8.14 -2.39 -0.02 -0.62 16 33 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.23 0.70 8.06 -2.91 -0.02 0.68 16 35 H 0.07 1.63 8.10 -2.39 -0.02 1.61 16 36 H 0.10 1.69 8.08 -2.39 -0.02 1.67 16 37 H 0.11 1.75 7.71 -2.39 -0.02 1.73 16 38 H 0.10 2.01 7.94 -2.39 -0.02 1.99 16 39 H 0.11 1.67 5.96 -2.38 -0.01 1.66 16 40 H 0.08 1.56 7.18 -2.39 -0.02 1.54 16 41 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 44 H 0.06 2.22 6.17 -2.39 -0.01 2.21 16 45 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 46 H 0.06 3.33 6.07 -2.38 -0.01 3.32 16 47 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 48 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 49 H 0.06 2.53 7.94 -2.38 -0.02 2.51 16 50 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 51 H 0.08 2.55 5.25 -2.39 -0.01 2.54 16 Total: -1.00 -78.77 393.96 4.63 -74.15 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.92 Total: 12.42 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 6.90 Total: 10.33 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -5.18 Total: -122.00 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.05 Total: -21.61 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -78.77 4.63 -74.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021753172.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.022 kcal (2) G-P(sol) polarization free energy of solvation -78.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds