Wall clock time and date at job start Wed Apr 1 2020 05:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47130 * 2 1 4 4 N 1.28520 * 124.44181 * 89.97988 * 3 2 1 5 5 C 1.31127 * 109.05964 * 180.02562 * 4 3 2 6 6 C 1.50705 * 127.11364 * 179.97438 * 5 4 3 7 7 C 1.40919 * 105.77813 * 0.02562 * 5 4 3 8 8 C 1.47801 * 127.23962 * 179.97438 * 7 5 4 9 9 O 1.21561 * 119.99899 * 354.48000 * 8 7 5 10 10 N 1.34780 * 120.00304 * 174.48531 * 8 7 5 11 11 C 1.47073 * 120.84139 * 5.02590 * 10 8 7 12 12 C 1.53127 * 109.11283 * 233.44598 * 11 10 8 13 13 C 1.53140 * 109.62443 * 305.96340 * 12 11 10 14 14 C 1.52814 * 109.26493 * 60.84715 * 13 12 11 15 15 H 1.09002 * 109.47585 * 58.00587 * 14 13 12 16 16 C 1.53069 * 110.33345 * 178.55380 * 14 13 12 17 17 N 1.46660 * 108.55138 * 175.20476 * 16 14 13 18 18 C 1.36931 * 120.40736 * 126.76989 * 17 16 14 19 19 H 1.08005 * 120.00036 * 210.82562 * 18 17 16 20 20 C 1.38810 * 120.00222 * 30.82953 * 18 17 16 21 21 N 1.31612 * 120.00125 * 9.42532 * 20 18 17 22 22 Si 1.86804 * 120.00034 * 189.42180 * 20 18 17 23 23 H 1.48505 * 109.46660 * 59.99997 * 22 20 18 24 24 H 1.48499 * 109.46969 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47215 * 300.00050 * 22 20 18 26 26 C 1.46866 * 119.11770 * 306.89486 * 17 16 14 27 27 C 1.53323 * 109.09972 * 52.53038 * 26 17 16 28 28 C 1.46878 * 120.95980 * 185.09395 * 10 8 7 29 29 H 1.08998 * 109.51191 * 245.20647 * 28 10 8 30 30 N 1.28584 * 124.44765 * 270.28918 * 3 2 1 31 31 H 1.08998 * 109.47085 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46895 * 299.99285 * 1 2 3 33 33 H 1.08990 * 109.47510 * 59.99389 * 1 2 3 34 34 H 1.09007 * 109.46895 * 240.00715 * 2 1 3 35 35 H 1.09000 * 109.47670 * 120.00091 * 2 1 3 36 36 H 1.08994 * 109.47109 * 270.02820 * 6 5 4 37 37 H 1.09002 * 109.46841 * 30.02311 * 6 5 4 38 38 H 1.08998 * 109.46953 * 150.02245 * 6 5 4 39 39 H 1.08994 * 109.54063 * 113.53457 * 11 10 8 40 40 H 1.08996 * 109.54178 * 353.36231 * 11 10 8 41 41 H 1.09007 * 109.44552 * 66.01468 * 12 11 10 42 42 H 1.09003 * 109.44238 * 185.94495 * 12 11 10 43 43 H 1.09007 * 109.50488 * 180.78114 * 13 12 11 44 44 H 1.08995 * 109.50607 * 300.86083 * 13 12 11 45 45 H 1.08995 * 109.69263 * 295.14103 * 16 14 13 46 46 H 1.09000 * 109.69167 * 55.72390 * 16 14 13 47 47 H 0.97004 * 120.00622 * 180.02562 * 21 20 18 48 48 H 1.08996 * 109.53688 * 292.64456 * 26 17 16 49 49 H 1.08997 * 109.53092 * 172.41230 * 26 17 16 50 50 H 1.08998 * 109.55723 * 186.05466 * 27 26 17 51 51 H 1.09001 * 109.64583 * 65.78109 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2602 2.0666 1.0599 5 6 2.6813 3.2588 0.7121 6 6 3.0788 4.3863 1.6296 7 6 2.6841 3.2681 -0.6971 8 6 3.0773 4.3836 -1.5833 9 8 3.3528 5.4685 -1.1092 10 7 3.1303 4.1981 -2.9173 11 6 2.6962 2.9287 -3.5198 12 6 3.8196 2.3846 -4.4068 13 6 4.2391 3.4540 -5.4194 14 6 4.7538 4.6829 -4.6710 15 1 5.5890 4.3959 -4.0321 16 6 5.2139 5.7551 -5.6618 17 7 5.5904 6.9558 -4.9084 18 6 6.8194 7.5314 -5.0909 19 1 7.3007 8.0475 -4.2733 20 6 7.4467 7.4517 -6.3266 21 7 6.7898 6.9901 -7.3695 22 14 9.2231 7.9997 -6.5094 23 1 10.0864 7.1864 -5.6157 24 1 9.6559 7.8144 -7.9178 25 1 9.3395 9.4333 -6.1398 26 6 4.6330 7.5303 -3.9544 27 6 4.1625 6.4325 -2.9931 28 6 3.6241 5.2563 -3.8082 29 1 2.8131 5.5991 -4.4507 30 7 2.2557 2.0687 -1.0603 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8898 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 2.2055 4.9999 1.8507 37 1 3.4788 3.9762 2.5569 38 1 3.8396 4.9981 1.1449 39 1 1.8045 3.0978 -4.1234 40 1 2.4723 2.2091 -2.7324 41 1 4.6748 2.1172 -3.7860 42 1 3.4665 1.5008 -4.9382 43 1 5.0292 3.0599 -6.0587 44 1 3.3810 3.7325 -6.0311 45 1 6.0719 5.3898 -6.2261 46 1 4.4000 5.9971 -6.3453 47 1 7.2282 6.9340 -8.2330 48 1 3.7766 7.9328 -4.4951 49 1 5.1159 8.3274 -3.3890 50 1 3.3730 6.8233 -2.3512 51 1 4.9996 6.0987 -2.3800 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021754766.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:55 Heat of formation + Delta-G solvation = 115.104491 kcal Electronic energy + Delta-G solvation = -32471.315817 eV Core-core repulsion = 28409.753093 eV Total energy + Delta-G solvation = -4061.562724 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.82407 -40.24077 -37.64595 -35.81430 -35.36235 -33.46472 -32.71872 -32.38170 -31.51143 -30.09304 -29.15761 -28.13461 -25.85603 -25.46109 -24.20114 -22.83659 -22.43098 -22.22042 -21.19813 -20.24584 -19.39232 -19.08774 -17.49526 -16.90681 -16.63876 -16.45738 -15.64916 -14.98816 -14.94653 -14.67355 -14.45220 -14.09732 -13.96680 -13.80438 -13.56516 -13.36240 -13.07148 -13.03371 -12.79120 -12.63657 -12.58004 -12.37537 -12.20740 -12.06810 -11.91726 -11.61394 -11.37156 -11.34608 -10.90654 -10.81091 -10.70722 -10.60509 -10.45074 -10.25448 -10.17659 -9.96911 -9.85301 -9.73840 -9.35633 -9.31071 -8.88045 -8.40924 -8.16925 -6.51950 -5.71017 -3.18212 1.21957 1.82454 1.89249 3.11516 3.37404 3.42786 3.47107 3.49001 3.72035 4.33991 4.34641 4.54697 4.59638 4.61483 4.74302 4.99596 5.12175 5.16308 5.20911 5.29554 5.34905 5.45950 5.51026 5.51843 5.53569 5.60637 5.62932 5.72231 5.83185 5.84917 5.87872 5.99259 6.08676 6.23739 6.25353 6.34428 6.40894 6.47886 6.53714 6.63508 6.67243 6.74365 6.87830 7.02389 7.12664 7.25118 7.44751 7.66272 7.76990 7.85808 8.00776 8.37951 8.56133 9.30735 9.92568 10.49439 11.36371 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018734 B = 0.002910 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.210727 B = 9620.074915 C =10418.175522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.133 3.867 3 N -0.148 5.148 4 N -0.293 5.293 5 C 0.059 3.941 6 C -0.067 4.067 7 C -0.035 4.035 8 C 0.602 3.398 9 O -0.517 6.517 10 N -0.589 5.589 11 C 0.076 3.924 12 C -0.129 4.129 13 C -0.112 4.112 14 C -0.120 4.120 15 H 0.065 0.935 16 C 0.183 3.817 17 N -0.594 5.594 18 C -0.247 4.247 19 H 0.063 0.937 20 C 0.002 3.998 21 N -0.908 5.908 22 Si 0.904 3.096 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.140 3.860 27 C -0.124 4.124 28 C 0.158 3.842 29 H 0.067 0.933 30 N -0.253 5.253 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.061 0.939 40 H 0.127 0.873 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.094 0.906 46 H 0.017 0.983 47 H 0.253 0.747 48 H 0.015 0.985 49 H 0.055 0.945 50 H 0.084 0.916 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.326 -16.244 13.477 24.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.014 3.986 3 N -0.049 5.049 4 N -0.134 5.134 5 C -0.104 4.104 6 C -0.126 4.126 7 C -0.198 4.198 8 C 0.386 3.614 9 O -0.392 6.392 10 N -0.321 5.321 11 C -0.047 4.047 12 C -0.167 4.167 13 C -0.151 4.151 14 C -0.141 4.141 15 H 0.083 0.917 16 C 0.056 3.944 17 N -0.316 5.316 18 C -0.377 4.377 19 H 0.081 0.919 20 C -0.196 4.196 21 N -0.553 5.553 22 Si 0.734 3.266 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.014 3.986 27 C -0.163 4.163 28 C 0.057 3.943 29 H 0.085 0.915 30 N -0.099 5.099 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.144 0.856 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.112 0.888 46 H 0.035 0.965 47 H 0.063 0.937 48 H 0.033 0.967 49 H 0.074 0.926 50 H 0.102 0.898 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.566 -16.939 13.553 25.586 hybrid contribution 1.134 0.728 -0.411 1.408 sum -12.433 -16.211 13.142 24.292 Atomic orbital electron populations 1.22189 0.92951 1.03976 1.03829 1.22070 0.96168 0.74365 1.06034 1.48310 1.43851 1.13263 0.99486 1.73908 1.18736 1.05372 1.15378 1.23247 1.00653 0.93798 0.92707 1.20219 1.02923 0.92749 0.96687 1.23324 1.08369 0.93546 0.94546 1.16835 0.77971 0.85231 0.81329 1.90820 1.49804 1.23423 1.75123 1.48181 1.62337 1.16494 1.05041 1.22586 0.96608 0.86295 0.99247 1.21869 0.98499 0.98410 0.97924 1.21499 1.00886 0.95327 0.97352 1.22292 0.96608 0.96576 0.98660 0.91667 1.20745 0.99371 0.83946 0.90309 1.43986 1.13723 1.27379 1.46547 1.19179 0.93537 1.30902 0.94127 0.91889 1.25134 0.98770 1.00563 0.95159 1.69941 1.35477 1.50463 0.99454 0.86342 0.84901 0.78727 0.76607 1.21083 1.21664 1.20886 1.21117 0.92417 0.94076 0.91029 1.22546 1.01327 0.95146 0.97261 1.21410 0.95664 0.86793 0.90458 0.91530 1.74058 1.16548 1.04715 1.14626 0.89474 0.91367 0.91265 0.87142 0.87214 0.90103 0.90874 0.88499 0.92025 0.85610 0.92142 0.91443 0.91696 0.92168 0.88777 0.96485 0.93651 0.96737 0.92611 0.89783 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 10.24 37.16 0.38 -0.43 16 2 C 0.13 0.77 7.24 -4.04 -0.03 0.74 16 3 N -0.15 -1.60 3.94 -10.61 -0.04 -1.64 16 4 N -0.29 -3.61 12.01 33.92 0.41 -3.20 16 5 C 0.06 0.79 7.39 -81.88 -0.61 0.19 16 6 C -0.07 -0.75 9.96 36.01 0.36 -0.39 16 7 C -0.04 -0.51 6.96 -82.68 -0.58 -1.09 16 8 C 0.60 10.03 7.60 -12.35 -0.09 9.93 16 9 O -0.52 -9.46 10.98 5.31 0.06 -9.40 16 10 N -0.59 -9.59 2.98 -166.32 -0.50 -10.09 16 11 C 0.08 1.03 6.33 -3.66 -0.02 1.01 16 12 C -0.13 -1.71 6.07 -26.59 -0.16 -1.88 16 13 C -0.11 -1.80 5.24 -26.75 -0.14 -1.94 16 14 C -0.12 -2.35 2.21 -90.54 -0.20 -2.55 16 15 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 16 C 0.18 4.39 4.55 -3.92 -0.02 4.37 16 17 N -0.59 -15.34 2.99 -172.58 -0.52 -15.86 16 18 C -0.25 -6.96 9.57 -15.06 -0.14 -7.10 16 19 H 0.06 1.75 7.85 -52.48 -0.41 1.34 16 20 C 0.00 0.05 5.08 -17.43 -0.09 -0.04 16 21 N -0.91 -26.44 10.93 55.49 0.61 -25.83 16 22 Si 0.90 22.08 29.56 -169.99 -5.03 17.06 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 26 C 0.14 3.15 6.51 -3.68 -0.02 3.13 16 27 C -0.12 -2.47 3.83 -26.62 -0.10 -2.58 16 28 C 0.16 2.92 2.63 -67.64 -0.18 2.74 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 30 N -0.25 -3.19 8.52 33.42 0.28 -2.91 16 31 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.10 1.20 6.89 -51.93 -0.36 0.85 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.13 1.60 3.77 -104.04 -0.39 1.21 16 41 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.09 2.53 6.02 -51.93 -0.31 2.22 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 50 H 0.08 1.65 6.13 -51.93 -0.32 1.33 16 51 H 0.06 1.38 7.47 -51.93 -0.39 0.99 16 LS Contribution 389.26 15.07 5.87 5.87 Total: -1.00 -32.55 389.26 -8.99 -41.54 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -8.49 Total: 0.34 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -1.64 Total: 4.12 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: 0.24 Total: -59.52 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.06 Total: -9.40 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.55 -8.99 -41.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021754766.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.646 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds