Wall clock time and date at job start Wed Apr 1 2020 05:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47130 * 2 1 4 4 N 1.28520 * 124.44181 * 89.97988 * 3 2 1 5 5 C 1.31127 * 109.05964 * 180.02562 * 4 3 2 6 6 C 1.50705 * 127.11364 * 179.97438 * 5 4 3 7 7 C 1.40919 * 105.77813 * 0.02562 * 5 4 3 8 8 C 1.47801 * 127.23962 * 179.97438 * 7 5 4 9 9 O 1.21561 * 119.99899 * 354.48000 * 8 7 5 10 10 N 1.34780 * 120.00304 * 174.48531 * 8 7 5 11 11 C 1.47073 * 120.84139 * 5.02590 * 10 8 7 12 12 C 1.53127 * 109.11283 * 233.44598 * 11 10 8 13 13 C 1.53140 * 109.62443 * 305.96340 * 12 11 10 14 14 C 1.52814 * 109.26493 * 60.84715 * 13 12 11 15 15 H 1.09002 * 109.47585 * 58.00587 * 14 13 12 16 16 C 1.53069 * 110.33345 * 178.55380 * 14 13 12 17 17 N 1.46660 * 108.55138 * 175.20476 * 16 14 13 18 18 C 1.36931 * 120.40736 * 126.76989 * 17 16 14 19 19 H 1.08005 * 120.00036 * 210.82562 * 18 17 16 20 20 C 1.38810 * 120.00222 * 30.82953 * 18 17 16 21 21 N 1.31612 * 120.00125 * 9.42532 * 20 18 17 22 22 Si 1.86804 * 120.00034 * 189.42180 * 20 18 17 23 23 H 1.48505 * 109.46660 * 59.99997 * 22 20 18 24 24 H 1.48499 * 109.46969 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47215 * 300.00050 * 22 20 18 26 26 C 1.46866 * 119.11770 * 306.89486 * 17 16 14 27 27 C 1.53323 * 109.09972 * 52.53038 * 26 17 16 28 28 C 1.46878 * 120.95980 * 185.09395 * 10 8 7 29 29 H 1.08998 * 109.51191 * 245.20647 * 28 10 8 30 30 N 1.28584 * 124.44765 * 270.28918 * 3 2 1 31 31 H 1.08998 * 109.47085 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46895 * 299.99285 * 1 2 3 33 33 H 1.08990 * 109.47510 * 59.99389 * 1 2 3 34 34 H 1.09007 * 109.46895 * 240.00715 * 2 1 3 35 35 H 1.09000 * 109.47670 * 120.00091 * 2 1 3 36 36 H 1.08994 * 109.47109 * 270.02820 * 6 5 4 37 37 H 1.09002 * 109.46841 * 30.02311 * 6 5 4 38 38 H 1.08998 * 109.46953 * 150.02245 * 6 5 4 39 39 H 1.08994 * 109.54063 * 113.53457 * 11 10 8 40 40 H 1.08996 * 109.54178 * 353.36231 * 11 10 8 41 41 H 1.09007 * 109.44552 * 66.01468 * 12 11 10 42 42 H 1.09003 * 109.44238 * 185.94495 * 12 11 10 43 43 H 1.09007 * 109.50488 * 180.78114 * 13 12 11 44 44 H 1.08995 * 109.50607 * 300.86083 * 13 12 11 45 45 H 1.08995 * 109.69263 * 295.14103 * 16 14 13 46 46 H 1.09000 * 109.69167 * 55.72390 * 16 14 13 47 47 H 0.97004 * 120.00622 * 180.02562 * 21 20 18 48 48 H 1.08996 * 109.53688 * 292.64456 * 26 17 16 49 49 H 1.08997 * 109.53092 * 172.41230 * 26 17 16 50 50 H 1.08998 * 109.55723 * 186.05466 * 27 26 17 51 51 H 1.09001 * 109.64583 * 65.78109 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2602 2.0666 1.0599 5 6 2.6813 3.2588 0.7121 6 6 3.0788 4.3863 1.6296 7 6 2.6841 3.2681 -0.6971 8 6 3.0773 4.3836 -1.5833 9 8 3.3528 5.4685 -1.1092 10 7 3.1303 4.1981 -2.9173 11 6 2.6962 2.9287 -3.5198 12 6 3.8196 2.3846 -4.4068 13 6 4.2391 3.4540 -5.4194 14 6 4.7538 4.6829 -4.6710 15 1 5.5890 4.3959 -4.0321 16 6 5.2139 5.7551 -5.6618 17 7 5.5904 6.9558 -4.9084 18 6 6.8194 7.5314 -5.0909 19 1 7.3007 8.0475 -4.2733 20 6 7.4467 7.4517 -6.3266 21 7 6.7898 6.9901 -7.3695 22 14 9.2231 7.9997 -6.5094 23 1 10.0864 7.1864 -5.6157 24 1 9.6559 7.8144 -7.9178 25 1 9.3395 9.4333 -6.1398 26 6 4.6330 7.5303 -3.9544 27 6 4.1625 6.4325 -2.9931 28 6 3.6241 5.2563 -3.8082 29 1 2.8131 5.5991 -4.4507 30 7 2.2557 2.0687 -1.0603 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8898 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 2.2055 4.9999 1.8507 37 1 3.4788 3.9762 2.5569 38 1 3.8396 4.9981 1.1449 39 1 1.8045 3.0978 -4.1234 40 1 2.4723 2.2091 -2.7324 41 1 4.6748 2.1172 -3.7860 42 1 3.4665 1.5008 -4.9382 43 1 5.0292 3.0599 -6.0587 44 1 3.3810 3.7325 -6.0311 45 1 6.0719 5.3898 -6.2261 46 1 4.4000 5.9971 -6.3453 47 1 7.2282 6.9340 -8.2330 48 1 3.7766 7.9328 -4.4951 49 1 5.1159 8.3274 -3.3890 50 1 3.3730 6.8233 -2.3512 51 1 4.9996 6.0987 -2.3800 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021754766.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:54 Heat of formation + Delta-G solvation = 95.324807 kcal Electronic energy + Delta-G solvation = -32472.173529 eV Core-core repulsion = 28409.753093 eV Total energy + Delta-G solvation = -4062.420435 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.76678 -41.62457 -39.13930 -37.40394 -36.08659 -34.77589 -34.32774 -33.66651 -32.45615 -31.73111 -30.82518 -29.01735 -27.34567 -26.94066 -25.39173 -24.20369 -23.91066 -23.35959 -22.20686 -21.59689 -21.06552 -20.42602 -18.69889 -18.32918 -17.88792 -17.57475 -17.10479 -16.70867 -16.25592 -15.64058 -15.58817 -15.50032 -15.32631 -15.14164 -14.93418 -14.72740 -14.33432 -14.09928 -14.02557 -13.79226 -13.71644 -13.54522 -13.40619 -13.14766 -13.01567 -12.80903 -12.74052 -12.67310 -12.47947 -12.39989 -12.27198 -12.12341 -12.05299 -11.81362 -11.66427 -11.61787 -11.38266 -11.20145 -10.89296 -10.57489 -10.32255 -10.25076 -9.53930 -8.59999 -7.85209 -5.36765 0.17959 0.83000 1.15187 1.45851 1.48012 1.54849 1.88765 2.16122 2.50495 2.77124 3.28160 3.48655 3.65035 3.71882 3.88269 3.93325 3.93827 3.98147 4.03301 4.12211 4.23616 4.29875 4.37213 4.41348 4.48581 4.53812 4.63850 4.70764 4.74213 4.75843 4.80077 4.86658 4.89232 4.92007 4.96594 4.98947 5.04857 5.08618 5.17671 5.19418 5.29164 5.33754 5.39784 5.43721 5.54132 5.60175 5.65406 5.79140 5.83149 6.37889 6.43515 6.97986 7.15230 7.17216 7.86252 8.37921 9.19228 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018734 B = 0.002910 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.210727 B = 9620.074915 C =10418.175522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.117 3.883 3 N -0.131 5.131 4 N -0.295 5.295 5 C 0.049 3.951 6 C -0.064 4.064 7 C -0.063 4.063 8 C 0.598 3.402 9 O -0.542 6.542 10 N -0.592 5.592 11 C 0.075 3.925 12 C -0.119 4.119 13 C -0.109 4.109 14 C -0.107 4.107 15 H 0.041 0.959 16 C 0.193 3.807 17 N -0.613 5.613 18 C -0.267 4.267 19 H 0.059 0.941 20 C -0.047 4.047 21 N -0.933 5.933 22 Si 0.969 3.031 23 H -0.280 1.280 24 H -0.289 1.289 25 H -0.276 1.276 26 C 0.139 3.861 27 C -0.103 4.103 28 C 0.166 3.834 29 H 0.069 0.931 30 N -0.246 5.246 31 H 0.117 0.883 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.140 0.860 41 H 0.051 0.949 42 H 0.104 0.896 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.062 0.938 46 H 0.000 1.000 47 H 0.251 0.749 48 H 0.016 0.984 49 H 0.051 0.949 50 H 0.091 0.909 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.490 -18.869 14.423 27.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.000 4.000 3 N -0.035 5.035 4 N -0.137 5.137 5 C -0.114 4.114 6 C -0.123 4.123 7 C -0.223 4.223 8 C 0.384 3.616 9 O -0.419 6.419 10 N -0.323 5.323 11 C -0.047 4.047 12 C -0.157 4.157 13 C -0.147 4.147 14 C -0.128 4.128 15 H 0.060 0.940 16 C 0.067 3.933 17 N -0.336 5.336 18 C -0.397 4.397 19 H 0.077 0.923 20 C -0.242 4.242 21 N -0.579 5.579 22 Si 0.797 3.203 23 H -0.206 1.206 24 H -0.215 1.215 25 H -0.202 1.202 26 C 0.013 3.987 27 C -0.143 4.143 28 C 0.063 3.937 29 H 0.087 0.913 30 N -0.095 5.095 31 H 0.136 0.864 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.156 0.844 41 H 0.069 0.931 42 H 0.122 0.878 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.018 0.982 47 H 0.061 0.939 48 H 0.034 0.966 49 H 0.069 0.931 50 H 0.109 0.891 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.752 -19.580 14.521 28.493 hybrid contribution 1.419 1.449 -0.650 2.129 sum -13.333 -18.132 13.870 26.437 Atomic orbital electron populations 1.22172 0.91901 1.05607 1.02625 1.22692 0.96999 0.72071 1.08256 1.48932 1.41673 1.14237 0.98678 1.73927 1.18930 1.05065 1.15786 1.23521 1.00691 0.94595 0.92548 1.20224 1.02837 0.92302 0.96942 1.22925 1.10846 0.93863 0.94684 1.17093 0.77409 0.85630 0.81465 1.90784 1.50899 1.24689 1.75554 1.48161 1.62318 1.16902 1.04887 1.22813 0.97045 0.85127 0.99754 1.21821 0.98191 0.98535 0.97126 1.21472 1.01003 0.94413 0.97794 1.22015 0.96357 0.96793 0.97612 0.94013 1.20515 0.97362 0.84619 0.90806 1.44257 1.13850 1.28350 1.47179 1.19453 0.94768 1.31156 0.94309 0.92314 1.25869 1.02649 1.00898 0.94787 1.70104 1.36881 1.51288 0.99633 0.85324 0.80116 0.78448 0.76421 1.20603 1.21491 1.20200 1.21211 0.91792 0.94893 0.90832 1.22292 1.00561 0.95087 0.96316 1.21105 0.95183 0.86942 0.90444 0.91320 1.73915 1.16174 1.04112 1.15272 0.86425 0.92581 0.92385 0.84897 0.85133 0.89220 0.89006 0.90241 0.90497 0.84356 0.93051 0.87783 0.91999 0.91279 0.91983 0.98173 0.93943 0.96567 0.93083 0.89115 0.93975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 10.24 71.98 0.74 -0.29 16 2 C 0.12 0.94 7.24 86.38 0.63 1.57 16 3 N -0.13 -2.49 3.94 -187.49 -0.74 -3.23 16 4 N -0.29 -6.67 12.01 -46.59 -0.56 -7.23 16 5 C 0.05 1.25 7.39 43.32 0.32 1.57 16 6 C -0.06 -1.40 9.96 71.24 0.71 -0.69 16 7 C -0.06 -1.77 6.96 42.24 0.29 -1.48 16 8 C 0.60 19.80 7.60 86.77 0.66 20.46 16 9 O -0.54 -20.22 10.98 -3.91 -0.04 -20.26 16 10 N -0.59 -18.85 2.98 -798.37 -2.38 -21.22 16 11 C 0.07 1.84 6.33 86.31 0.55 2.39 16 12 C -0.12 -2.87 6.07 30.68 0.19 -2.68 16 13 C -0.11 -3.38 5.24 30.58 0.16 -3.22 16 14 C -0.11 -4.25 2.21 -10.74 -0.02 -4.28 16 15 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 16 C 0.19 9.64 4.55 86.37 0.39 10.03 16 17 N -0.61 -32.91 2.99 -699.93 -2.10 -35.00 16 18 C -0.27 -15.47 9.57 84.03 0.80 -14.67 16 19 H 0.06 3.38 7.85 -2.91 -0.02 3.35 16 20 C -0.05 -2.68 5.08 84.86 0.43 -2.25 16 21 N -0.93 -55.80 10.93 21.65 0.24 -55.57 16 22 Si 0.97 46.20 29.56 68.60 2.03 48.22 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 25 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 26 C 0.14 6.45 6.51 86.42 0.56 7.01 16 27 C -0.10 -4.26 3.83 30.67 0.12 -4.14 16 28 C 0.17 6.17 2.63 44.98 0.12 6.29 16 29 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 30 N -0.25 -5.66 8.52 -48.17 -0.41 -6.07 16 31 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.13 0.53 8.14 -2.38 -0.02 0.51 16 35 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.08 2.02 6.89 -2.39 -0.02 2.00 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.14 3.13 3.77 -69.80 -0.26 2.86 16 41 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 44 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.06 3.49 6.02 -2.39 -0.01 3.47 16 46 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 47 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 48 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.05 2.36 7.93 -2.39 -0.02 2.34 16 50 H 0.09 3.64 6.13 -2.39 -0.01 3.62 16 51 H 0.04 1.90 7.47 -2.39 -0.02 1.88 16 Total: -1.00 -72.89 389.26 3.35 -69.54 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.67 Total: 15.21 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 6.64 Total: 15.62 kcal Atomic # 7 Polarization: -122.39 SS G_CDS: -5.95 Total: -128.33 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.04 Total: -20.26 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -72.89 3.35 -69.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021754766.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.864 kcal (2) G-P(sol) polarization free energy of solvation -72.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds