Wall clock time and date at job start Wed Apr 1 2020 05:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46918 * 2 1 4 4 N 1.28518 * 124.44280 * 270.01813 * 3 2 1 5 5 C 1.31131 * 109.05624 * 179.69307 * 4 3 2 6 6 C 1.50706 * 127.11129 * 180.28990 * 5 4 3 7 7 C 1.40923 * 105.77893 * 0.43760 * 5 4 3 8 8 C 1.47803 * 127.23942 * 179.83826 * 7 5 4 9 9 O 1.21558 * 119.99795 * 354.12206 * 8 7 5 10 10 N 1.34773 * 120.00135 * 174.12565 * 8 7 5 11 11 C 1.46953 * 120.84379 * 353.91487 * 10 8 7 12 12 C 1.53136 * 109.03127 * 234.04117 * 11 10 8 13 13 C 1.53124 * 109.47898 * 305.93551 * 12 11 10 14 14 C 1.52856 * 109.34210 * 60.65201 * 13 12 11 15 15 H 1.08998 * 109.25954 * 57.49805 * 14 13 12 16 16 C 1.52772 * 109.56204 * 177.16346 * 14 13 12 17 17 N 1.46890 * 109.19342 * 66.92213 * 16 14 13 18 18 C 1.36933 * 120.77191 * 233.32839 * 17 16 14 19 19 H 1.08007 * 120.00079 * 151.48094 * 18 17 16 20 20 C 1.38810 * 120.00309 * 331.48178 * 18 17 16 21 21 N 1.31621 * 119.99574 * 343.30912 * 20 18 17 22 22 Si 1.86800 * 120.00444 * 163.31566 * 20 18 17 23 23 H 1.48498 * 109.47042 * 59.99372 * 22 20 18 24 24 H 1.48493 * 109.47193 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46548 * 299.99693 * 22 20 18 26 26 C 1.46980 * 118.45162 * 53.34425 * 17 16 14 27 27 C 1.49965 * 108.96575 * 306.51944 * 26 17 16 28 28 C 1.47308 * 120.84675 * 173.94753 * 10 8 7 29 29 H 1.08997 * 110.07420 * 4.88750 * 28 10 8 30 30 N 1.28592 * 124.44164 * 90.00307 * 3 2 1 31 31 H 1.09003 * 109.47169 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47356 * 300.00273 * 1 2 3 33 33 H 1.09001 * 109.46816 * 60.00167 * 1 2 3 34 34 H 1.08997 * 109.47356 * 239.99726 * 2 1 3 35 35 H 1.09001 * 109.46816 * 119.99833 * 2 1 3 36 36 H 1.08999 * 109.47524 * 270.17102 * 6 5 4 37 37 H 1.08995 * 109.46807 * 30.17800 * 6 5 4 38 38 H 1.09003 * 109.46555 * 150.16772 * 6 5 4 39 39 H 1.09006 * 109.53789 * 114.17816 * 11 10 8 40 40 H 1.08996 * 109.54691 * 353.91564 * 11 10 8 41 41 H 1.08994 * 109.46883 * 185.93308 * 12 11 10 42 42 H 1.08999 * 109.46364 * 65.93790 * 12 11 10 43 43 H 1.08996 * 109.49474 * 300.68645 * 13 12 11 44 44 H 1.08999 * 109.48956 * 180.61032 * 13 12 11 45 45 H 1.09000 * 109.51295 * 186.83518 * 16 14 13 46 46 H 1.08997 * 109.51454 * 306.94564 * 16 14 13 47 47 H 0.97004 * 119.99915 * 179.97438 * 21 20 18 48 48 H 1.08995 * 109.60654 * 65.43242 * 26 17 16 49 49 H 1.09001 * 109.60818 * 185.77489 * 26 17 16 50 50 H 1.09002 * 107.93724 * 293.91026 * 27 26 17 51 51 H 1.09002 * 109.25773 * 174.99635 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2603 2.0667 -1.0599 5 6 2.6755 3.2608 -0.7120 6 6 3.0656 4.3910 -1.6294 7 6 2.6848 3.2678 0.6972 8 6 3.0789 4.3830 1.5836 9 8 3.5462 5.4002 1.1095 10 7 2.9202 4.2723 2.9173 11 6 2.2370 3.1093 3.5007 12 6 1.0999 3.5986 4.4023 13 6 1.6533 4.5904 5.4293 14 6 2.2607 5.7885 4.6998 15 1 1.5011 6.2467 4.0664 16 6 2.7511 6.8140 5.7205 17 7 3.8820 6.2485 6.4682 18 6 3.8734 6.2216 7.8372 19 1 4.4147 5.4507 8.3656 20 6 3.1692 7.1852 8.5460 21 7 2.7895 8.2950 7.9487 22 14 2.7605 6.9071 10.3474 23 1 4.0176 6.7405 11.1201 24 1 2.0095 8.0763 10.8708 25 1 1.9301 5.6835 10.4833 26 6 5.0230 5.7125 5.7125 27 6 4.5202 4.7122 4.7147 28 6 3.4265 5.3141 3.8273 29 1 3.8281 6.1492 3.2534 30 7 2.2608 2.0669 1.0605 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 4.1299 4.3248 -1.8553 37 1 2.4929 4.3223 -2.5542 38 1 2.8560 5.3433 -1.1422 39 1 2.9458 2.5282 4.0907 40 1 1.8288 2.4883 2.7034 41 1 0.6559 2.7488 4.9205 42 1 0.3406 4.0907 3.7945 43 1 2.4213 4.1023 6.0292 44 1 0.8461 4.9305 6.0780 45 1 3.0722 7.7180 5.2030 46 1 1.9425 7.0568 6.4100 47 1 2.2970 8.9682 8.4439 48 1 5.5201 6.5217 5.1777 49 1 5.7267 5.2407 6.3983 50 1 4.1147 3.8634 5.2654 51 1 5.3497 4.3775 4.0919 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021754768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:04 Heat of formation + Delta-G solvation = 103.317530 kcal Electronic energy + Delta-G solvation = -32462.988039 eV Core-core repulsion = 28400.914194 eV Total energy + Delta-G solvation = -4062.073845 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.84020 -40.19921 -38.02912 -35.58835 -35.35826 -33.41262 -32.60115 -32.34186 -31.54560 -30.21535 -29.48919 -28.17621 -25.89424 -25.51736 -24.29800 -22.93832 -22.31853 -21.86552 -21.25393 -21.21966 -19.59857 -17.84260 -17.52239 -16.95996 -16.82111 -16.45775 -15.73719 -15.08500 -14.96131 -14.81845 -14.42197 -14.18608 -13.99716 -13.60231 -13.53153 -13.44594 -13.07904 -12.95773 -12.77785 -12.72190 -12.59268 -12.48888 -12.32758 -12.15316 -11.90672 -11.62149 -11.55467 -11.35838 -11.01750 -10.73975 -10.64463 -10.55495 -10.44159 -10.24270 -10.09247 -10.04255 -9.87154 -9.75603 -9.56192 -9.36388 -9.35314 -8.46466 -8.20952 -6.63775 -5.76782 -3.19389 1.19937 1.79579 1.88915 3.10024 3.31187 3.39125 3.45234 3.45799 3.71203 4.34483 4.34753 4.50838 4.58058 4.61723 4.72565 5.01801 5.15727 5.17810 5.29205 5.32099 5.33340 5.45179 5.49153 5.50536 5.53221 5.55402 5.57849 5.63387 5.80358 5.85004 5.88049 5.96140 6.12132 6.19089 6.22172 6.28227 6.42981 6.47046 6.53478 6.55098 6.60406 6.73850 6.83010 6.96539 7.00977 7.09760 7.35166 7.59508 7.69036 7.81268 7.98316 8.29431 8.47107 9.23175 9.86226 10.44498 11.31875 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019669 B = 0.002864 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.217756 B = 9775.693088 C =10553.514299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.133 3.867 3 N -0.147 5.147 4 N -0.293 5.293 5 C 0.059 3.941 6 C -0.067 4.067 7 C -0.036 4.036 8 C 0.602 3.398 9 O -0.531 6.531 10 N -0.587 5.587 11 C 0.088 3.912 12 C -0.133 4.133 13 C -0.104 4.104 14 C -0.115 4.115 15 H 0.057 0.943 16 C 0.179 3.821 17 N -0.588 5.588 18 C -0.250 4.250 19 H 0.064 0.936 20 C 0.004 3.996 21 N -0.902 5.902 22 Si 0.900 3.100 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.147 3.853 27 C -0.138 4.138 28 C 0.157 3.843 29 H 0.096 0.904 30 N -0.248 5.248 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.115 0.885 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.020 0.980 46 H 0.091 0.909 47 H 0.254 0.746 48 H 0.016 0.984 49 H 0.058 0.942 50 H 0.064 0.936 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.484 -16.756 -16.896 24.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.049 5.049 4 N -0.134 5.134 5 C -0.105 4.105 6 C -0.125 4.125 7 C -0.199 4.199 8 C 0.387 3.613 9 O -0.407 6.407 10 N -0.318 5.318 11 C -0.036 4.036 12 C -0.171 4.171 13 C -0.141 4.141 14 C -0.136 4.136 15 H 0.076 0.924 16 C 0.052 3.948 17 N -0.311 5.311 18 C -0.380 4.380 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.730 3.270 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.211 1.211 26 C 0.020 3.980 27 C -0.178 4.178 28 C 0.055 3.945 29 H 0.114 0.886 30 N -0.095 5.095 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.132 0.868 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.038 0.962 46 H 0.109 0.891 47 H 0.064 0.936 48 H 0.034 0.966 49 H 0.077 0.923 50 H 0.083 0.917 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.755 -17.360 -17.056 24.797 hybrid contribution -0.069 0.494 1.052 1.164 sum -4.824 -16.866 -16.004 23.746 Atomic orbital electron populations 1.22195 0.92894 1.04027 1.03878 1.22076 0.96207 0.74275 1.06037 1.48288 1.43807 1.13319 0.99446 1.73908 1.18925 1.05166 1.15426 1.23254 1.00789 0.93730 0.92699 1.20210 1.01971 0.93691 0.96666 1.23108 1.08808 0.93576 0.94360 1.16743 0.78728 0.84462 0.81367 1.90770 1.46210 1.28974 1.74740 1.48308 1.55523 1.23324 1.04630 1.22356 0.94640 0.87720 0.98860 1.21960 0.97408 0.99752 0.97997 1.21462 1.00537 0.95416 0.96734 1.22034 0.96008 0.98004 0.97578 0.92421 1.20688 0.91822 0.90571 0.91673 1.44024 1.14224 1.70774 1.02076 1.19088 1.30307 1.07290 0.81294 0.91821 1.25040 1.02153 0.94647 0.97623 1.70018 1.41800 1.06604 1.36188 0.86406 0.78271 0.77036 0.85269 1.20952 1.21704 1.21067 1.20271 0.90808 0.94145 0.92738 1.21802 0.97214 1.00881 0.97921 1.21345 0.94565 0.89316 0.89236 0.88620 1.74274 1.15736 1.04794 1.14732 0.89438 0.91201 0.91358 0.87214 0.87106 0.90065 0.90830 0.88659 0.91682 0.86794 0.91493 0.92507 0.90532 0.92169 0.96223 0.89123 0.93587 0.96603 0.92344 0.91748 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 10.24 37.16 0.38 -0.47 16 2 C 0.13 0.78 7.24 -4.04 -0.03 0.76 16 3 N -0.15 -1.59 3.94 -10.61 -0.04 -1.63 16 4 N -0.29 -3.58 12.01 33.92 0.41 -3.18 16 5 C 0.06 0.78 7.39 -81.87 -0.61 0.17 16 6 C -0.07 -0.73 9.95 36.01 0.36 -0.37 16 7 C -0.04 -0.53 6.90 -82.68 -0.57 -1.10 16 8 C 0.60 10.08 7.70 -12.35 -0.10 9.99 16 9 O -0.53 -9.98 14.74 5.32 0.08 -9.90 16 10 N -0.59 -9.56 2.68 -166.00 -0.44 -10.01 16 11 C 0.09 1.23 5.70 -3.72 -0.02 1.21 16 12 C -0.13 -1.89 6.08 -26.60 -0.16 -2.05 16 13 C -0.10 -1.83 4.82 -26.74 -0.13 -1.96 16 14 C -0.12 -2.22 2.50 -90.73 -0.23 -2.44 16 15 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 16 C 0.18 4.20 4.66 -3.95 -0.02 4.18 16 17 N -0.59 -14.32 2.57 -174.47 -0.45 -14.76 16 18 C -0.25 -6.67 9.59 -15.06 -0.14 -6.82 16 19 H 0.06 1.67 7.88 -52.48 -0.41 1.26 16 20 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16 21 N -0.90 -25.87 11.22 55.49 0.62 -25.25 16 22 Si 0.90 21.40 29.59 -169.99 -5.03 16.37 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C 0.15 3.08 6.42 -5.29 -0.03 3.05 16 27 C -0.14 -2.49 4.84 -28.15 -0.14 -2.63 16 28 C 0.16 2.86 2.67 -67.33 -0.18 2.68 16 29 H 0.10 1.92 7.06 -51.93 -0.37 1.55 16 30 N -0.25 -3.16 8.63 33.42 0.29 -2.88 16 31 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.15 6.90 -51.93 -0.36 0.79 16 39 H 0.06 0.90 7.30 -51.93 -0.38 0.53 16 40 H 0.11 1.50 4.12 -69.10 -0.28 1.22 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 1.46 6.13 -51.93 -0.32 1.15 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.09 2.37 6.10 -51.93 -0.32 2.05 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.06 1.19 7.94 -51.93 -0.41 0.78 16 50 H 0.06 1.16 5.42 -51.93 -0.28 0.87 16 51 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 389.48 15.07 5.87 5.87 Total: -1.00 -31.68 389.48 -8.58 -40.26 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -8.18 Total: 0.86 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -1.70 Total: 4.25 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: 0.38 Total: -57.71 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.68 -8.58 -40.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021754768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.575 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds