Wall clock time and date at job start Wed Apr 1 2020 05:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46918 * 2 1 4 4 N 1.28518 * 124.44280 * 270.01813 * 3 2 1 5 5 C 1.31131 * 109.05624 * 179.69307 * 4 3 2 6 6 C 1.50706 * 127.11129 * 180.28990 * 5 4 3 7 7 C 1.40923 * 105.77893 * 0.43760 * 5 4 3 8 8 C 1.47803 * 127.23942 * 179.83826 * 7 5 4 9 9 O 1.21558 * 119.99795 * 354.12206 * 8 7 5 10 10 N 1.34773 * 120.00135 * 174.12565 * 8 7 5 11 11 C 1.46953 * 120.84379 * 353.91487 * 10 8 7 12 12 C 1.53136 * 109.03127 * 234.04117 * 11 10 8 13 13 C 1.53124 * 109.47898 * 305.93551 * 12 11 10 14 14 C 1.52856 * 109.34210 * 60.65201 * 13 12 11 15 15 H 1.08998 * 109.25954 * 57.49805 * 14 13 12 16 16 C 1.52772 * 109.56204 * 177.16346 * 14 13 12 17 17 N 1.46890 * 109.19342 * 66.92213 * 16 14 13 18 18 C 1.36933 * 120.77191 * 233.32839 * 17 16 14 19 19 H 1.08007 * 120.00079 * 151.48094 * 18 17 16 20 20 C 1.38810 * 120.00309 * 331.48178 * 18 17 16 21 21 N 1.31621 * 119.99574 * 343.30912 * 20 18 17 22 22 Si 1.86800 * 120.00444 * 163.31566 * 20 18 17 23 23 H 1.48498 * 109.47042 * 59.99372 * 22 20 18 24 24 H 1.48493 * 109.47193 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46548 * 299.99693 * 22 20 18 26 26 C 1.46980 * 118.45162 * 53.34425 * 17 16 14 27 27 C 1.49965 * 108.96575 * 306.51944 * 26 17 16 28 28 C 1.47308 * 120.84675 * 173.94753 * 10 8 7 29 29 H 1.08997 * 110.07420 * 4.88750 * 28 10 8 30 30 N 1.28592 * 124.44164 * 90.00307 * 3 2 1 31 31 H 1.09003 * 109.47169 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47356 * 300.00273 * 1 2 3 33 33 H 1.09001 * 109.46816 * 60.00167 * 1 2 3 34 34 H 1.08997 * 109.47356 * 239.99726 * 2 1 3 35 35 H 1.09001 * 109.46816 * 119.99833 * 2 1 3 36 36 H 1.08999 * 109.47524 * 270.17102 * 6 5 4 37 37 H 1.08995 * 109.46807 * 30.17800 * 6 5 4 38 38 H 1.09003 * 109.46555 * 150.16772 * 6 5 4 39 39 H 1.09006 * 109.53789 * 114.17816 * 11 10 8 40 40 H 1.08996 * 109.54691 * 353.91564 * 11 10 8 41 41 H 1.08994 * 109.46883 * 185.93308 * 12 11 10 42 42 H 1.08999 * 109.46364 * 65.93790 * 12 11 10 43 43 H 1.08996 * 109.49474 * 300.68645 * 13 12 11 44 44 H 1.08999 * 109.48956 * 180.61032 * 13 12 11 45 45 H 1.09000 * 109.51295 * 186.83518 * 16 14 13 46 46 H 1.08997 * 109.51454 * 306.94564 * 16 14 13 47 47 H 0.97004 * 119.99915 * 179.97438 * 21 20 18 48 48 H 1.08995 * 109.60654 * 65.43242 * 26 17 16 49 49 H 1.09001 * 109.60818 * 185.77489 * 26 17 16 50 50 H 1.09002 * 107.93724 * 293.91026 * 27 26 17 51 51 H 1.09002 * 109.25773 * 174.99635 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2603 2.0667 -1.0599 5 6 2.6755 3.2608 -0.7120 6 6 3.0656 4.3910 -1.6294 7 6 2.6848 3.2678 0.6972 8 6 3.0789 4.3830 1.5836 9 8 3.5462 5.4002 1.1095 10 7 2.9202 4.2723 2.9173 11 6 2.2370 3.1093 3.5007 12 6 1.0999 3.5986 4.4023 13 6 1.6533 4.5904 5.4293 14 6 2.2607 5.7885 4.6998 15 1 1.5011 6.2467 4.0664 16 6 2.7511 6.8140 5.7205 17 7 3.8820 6.2485 6.4682 18 6 3.8734 6.2216 7.8372 19 1 4.4147 5.4507 8.3656 20 6 3.1692 7.1852 8.5460 21 7 2.7895 8.2950 7.9487 22 14 2.7605 6.9071 10.3474 23 1 4.0176 6.7405 11.1201 24 1 2.0095 8.0763 10.8708 25 1 1.9301 5.6835 10.4833 26 6 5.0230 5.7125 5.7125 27 6 4.5202 4.7122 4.7147 28 6 3.4265 5.3141 3.8273 29 1 3.8281 6.1492 3.2534 30 7 2.2608 2.0669 1.0605 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 4.1299 4.3248 -1.8553 37 1 2.4929 4.3223 -2.5542 38 1 2.8560 5.3433 -1.1422 39 1 2.9458 2.5282 4.0907 40 1 1.8288 2.4883 2.7034 41 1 0.6559 2.7488 4.9205 42 1 0.3406 4.0907 3.7945 43 1 2.4213 4.1023 6.0292 44 1 0.8461 4.9305 6.0780 45 1 3.0722 7.7180 5.2030 46 1 1.9425 7.0568 6.4100 47 1 2.2970 8.9682 8.4439 48 1 5.5201 6.5217 5.1777 49 1 5.7267 5.2407 6.3983 50 1 4.1147 3.8634 5.2654 51 1 5.3497 4.3775 4.0919 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021754768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:03 Heat of formation + Delta-G solvation = 84.674690 kcal Electronic energy + Delta-G solvation = -32463.796453 eV Core-core repulsion = 28400.914194 eV Total energy + Delta-G solvation = -4062.882259 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.77713 -41.60323 -39.49985 -37.16569 -36.06791 -34.69859 -34.20098 -33.65452 -32.43024 -31.76049 -31.20057 -29.03847 -27.37744 -26.96341 -25.55036 -24.17968 -23.55999 -23.30593 -22.77151 -22.12687 -20.91987 -19.49419 -18.51007 -18.37773 -17.99253 -17.65537 -17.08613 -16.88589 -16.23430 -15.96816 -15.63490 -15.41602 -15.19009 -15.14458 -14.83387 -14.63813 -14.32284 -14.20062 -14.06003 -13.91434 -13.76281 -13.59016 -13.40992 -13.24017 -13.01491 -12.91216 -12.66784 -12.57853 -12.54194 -12.42036 -12.26600 -11.99697 -11.93583 -11.81629 -11.64037 -11.48109 -11.34455 -11.22546 -11.12936 -10.83375 -10.49769 -10.28844 -9.58361 -8.65864 -7.84237 -5.30039 0.15509 0.81240 1.14860 1.49467 1.51147 1.57983 1.86538 2.09232 2.53677 2.75990 3.31644 3.47090 3.63980 3.69882 3.84136 3.93064 3.93280 3.97365 4.03289 4.10111 4.22489 4.23682 4.38486 4.41461 4.47633 4.53336 4.59034 4.70608 4.74458 4.76779 4.77647 4.81721 4.90885 4.94611 4.96357 4.99884 5.05020 5.10637 5.13318 5.18113 5.22193 5.29709 5.32865 5.43800 5.55019 5.61140 5.67683 5.70979 5.74872 6.34913 6.41462 6.92245 7.10763 7.16821 7.86491 8.41266 9.22755 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019669 B = 0.002864 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.217756 B = 9775.693088 C =10553.514299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.117 3.883 3 N -0.130 5.130 4 N -0.294 5.294 5 C 0.049 3.951 6 C -0.065 4.065 7 C -0.064 4.064 8 C 0.601 3.399 9 O -0.561 6.561 10 N -0.587 5.587 11 C 0.090 3.910 12 C -0.122 4.122 13 C -0.096 4.096 14 C -0.105 4.105 15 H 0.055 0.945 16 C 0.190 3.810 17 N -0.601 5.601 18 C -0.255 4.255 19 H 0.070 0.930 20 C -0.049 4.049 21 N -0.937 5.937 22 Si 0.965 3.035 23 H -0.277 1.277 24 H -0.298 1.298 25 H -0.275 1.275 26 C 0.145 3.855 27 C -0.123 4.123 28 C 0.165 3.835 29 H 0.072 0.928 30 N -0.243 5.243 31 H 0.117 0.883 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.130 0.870 41 H 0.097 0.903 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.047 0.953 45 H -0.014 1.014 46 H 0.061 0.939 47 H 0.249 0.751 48 H 0.005 0.995 49 H 0.066 0.934 50 H 0.072 0.928 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.065 -20.560 -17.611 27.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.001 3.999 3 N -0.035 5.035 4 N -0.136 5.136 5 C -0.113 4.113 6 C -0.123 4.123 7 C -0.224 4.224 8 C 0.387 3.613 9 O -0.438 6.438 10 N -0.318 5.318 11 C -0.033 4.033 12 C -0.160 4.160 13 C -0.134 4.134 14 C -0.126 4.126 15 H 0.073 0.927 16 C 0.064 3.936 17 N -0.324 5.324 18 C -0.385 4.385 19 H 0.087 0.913 20 C -0.244 4.244 21 N -0.583 5.583 22 Si 0.793 3.207 23 H -0.202 1.202 24 H -0.225 1.225 25 H -0.201 1.201 26 C 0.019 3.981 27 C -0.163 4.163 28 C 0.062 3.938 29 H 0.090 0.910 30 N -0.093 5.093 31 H 0.136 0.864 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.147 0.853 41 H 0.115 0.885 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.005 0.995 46 H 0.079 0.921 47 H 0.058 0.942 48 H 0.023 0.977 49 H 0.084 0.916 50 H 0.091 0.909 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.328 -21.202 -17.787 28.184 hybrid contribution 0.117 1.597 1.198 2.000 sum -5.211 -19.605 -16.590 26.206 Atomic orbital electron populations 1.22181 0.91964 1.05617 1.02643 1.22688 0.96933 0.72025 1.08281 1.48906 1.41636 1.14275 0.98644 1.73931 1.19045 1.04878 1.15772 1.23544 1.00727 0.94546 0.92507 1.20230 1.02784 0.92312 0.97001 1.22730 1.11309 0.93796 0.94543 1.17012 0.78082 0.84723 0.81475 1.90749 1.47464 1.30358 1.75274 1.48252 1.55754 1.23334 1.04438 1.22520 0.94557 0.86928 0.99272 1.21896 0.97363 0.99701 0.97087 1.21350 0.99693 0.95166 0.97186 1.21817 0.96409 0.97756 0.96649 0.92700 1.20406 0.90798 0.90832 0.91575 1.44226 1.15458 1.70830 1.01912 1.19428 1.29675 1.06970 0.82462 0.91272 1.25788 1.02588 0.94456 1.01565 1.70190 1.42950 1.07524 1.37626 0.85381 0.78044 0.76704 0.80562 1.20238 1.22455 1.20107 1.20389 0.90043 0.94435 0.93187 1.21600 0.97576 0.99870 0.97241 1.21002 0.94067 0.89536 0.89156 0.90951 1.74133 1.15455 1.04225 1.15443 0.86441 0.92422 0.92529 0.84999 0.84951 0.89318 0.88769 0.90275 0.90783 0.85315 0.88507 0.92482 0.91687 0.93376 0.99546 0.92111 0.94216 0.97700 0.91572 0.90898 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 10.24 71.98 0.74 -0.35 16 2 C 0.12 0.94 7.24 86.38 0.63 1.57 16 3 N -0.13 -2.45 3.94 -187.49 -0.74 -3.19 16 4 N -0.29 -6.52 12.01 -46.58 -0.56 -7.08 16 5 C 0.05 1.24 7.39 43.32 0.32 1.56 16 6 C -0.06 -1.36 9.95 71.24 0.71 -0.65 16 7 C -0.06 -1.78 6.90 42.24 0.29 -1.48 16 8 C 0.60 19.91 7.70 86.77 0.67 20.58 16 9 O -0.56 -21.52 14.74 -3.90 -0.06 -21.57 16 10 N -0.59 -18.64 2.68 -797.37 -2.13 -20.78 16 11 C 0.09 2.30 5.70 86.34 0.49 2.79 16 12 C -0.12 -3.19 6.08 30.68 0.19 -3.00 16 13 C -0.10 -3.33 4.82 30.59 0.15 -3.18 16 14 C -0.11 -4.15 2.50 -10.87 -0.03 -4.18 16 15 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 16 C 0.19 9.40 4.66 86.23 0.40 9.80 16 17 N -0.60 -29.98 2.57 -705.90 -1.81 -31.79 16 18 C -0.26 -13.77 9.59 84.03 0.81 -12.96 16 19 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 20 C -0.05 -2.70 4.92 84.86 0.42 -2.28 16 21 N -0.94 -55.76 11.22 21.65 0.24 -55.51 16 22 Si 0.96 44.49 29.59 68.60 2.03 46.52 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 25 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 26 C 0.15 6.14 6.42 85.31 0.55 6.68 16 27 C -0.12 -4.35 4.84 29.67 0.14 -4.21 16 28 C 0.17 6.08 2.67 44.94 0.12 6.20 16 29 H 0.07 3.02 7.06 -2.39 -0.02 3.00 16 30 N -0.24 -5.60 8.63 -48.16 -0.42 -6.02 16 31 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.08 1.93 6.90 -2.39 -0.02 1.92 16 39 H 0.07 1.81 7.30 -2.38 -0.02 1.79 16 40 H 0.13 3.01 4.12 -24.60 -0.10 2.91 16 41 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.06 2.41 6.13 -2.39 -0.01 2.40 16 44 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 45 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 46 H 0.06 3.35 6.10 -2.39 -0.01 3.34 16 47 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 48 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 49 H 0.07 2.66 7.94 -2.39 -0.02 2.64 16 50 H 0.07 2.48 5.42 -2.39 -0.01 2.47 16 51 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -70.85 389.48 3.98 -66.87 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.84 Total: 15.67 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 6.59 Total: 16.89 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -5.42 Total: -124.37 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.06 Total: -21.57 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -70.85 3.98 -66.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021754768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.545 kcal (2) G-P(sol) polarization free energy of solvation -70.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds