Wall clock time and date at job start Wed Apr 1 2020 05:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.29103 * 126.00860 * 2 1 4 4 N 1.29020 * 110.25996 * 179.97438 * 3 2 1 5 5 C 1.32908 * 108.63435 * 359.97438 * 4 3 2 6 6 C 1.34400 * 126.00522 * 180.02562 * 2 1 3 7 7 C 1.50536 * 129.25422 * 0.12850 * 6 2 1 8 8 C 1.53437 * 108.31920 * 163.57342 * 7 6 2 9 9 H 1.09003 * 109.45851 * 289.70853 * 8 7 6 10 10 C 1.50708 * 109.45711 * 169.74650 * 8 7 6 11 11 O 1.21283 * 119.99538 * 359.97438 * 10 8 7 12 12 N 1.34768 * 120.00178 * 179.97438 * 10 8 7 13 13 C 1.46501 * 119.99989 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.47052 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.70070 * 59.57464 * 14 13 12 16 16 C 1.53194 * 109.58794 * 179.97438 * 14 13 12 17 17 C 1.53036 * 109.31670 * 174.42327 * 16 14 13 18 18 C 1.53041 * 109.53757 * 298.64117 * 17 16 14 19 19 C 1.53194 * 109.31719 * 61.35957 * 18 17 16 20 20 N 1.46918 * 108.77394 * 305.36877 * 19 18 17 21 21 C 1.36943 * 120.63174 * 233.62608 * 20 19 18 22 22 H 1.07995 * 120.00184 * 148.33206 * 21 20 19 23 23 C 1.38810 * 119.99487 * 328.33680 * 21 20 19 24 24 N 1.31615 * 120.00493 * 345.32173 * 23 21 20 25 25 Si 1.86807 * 119.99722 * 165.32408 * 23 21 20 26 26 H 1.48502 * 109.47105 * 359.97438 * 25 23 21 27 27 H 1.48491 * 109.47409 * 119.99825 * 25 23 21 28 28 H 1.48504 * 109.47057 * 239.99862 * 25 23 21 29 29 C 1.53098 * 109.55516 * 49.72172 * 8 7 6 30 30 C 1.50598 * 129.16282 * 180.20740 * 5 4 3 31 31 H 1.09007 * 109.46978 * 269.97474 * 1 2 3 32 32 H 1.09000 * 109.46892 * 29.97066 * 1 2 3 33 33 H 1.08997 * 109.47214 * 149.97366 * 1 2 3 34 34 H 1.08998 * 109.69091 * 43.86558 * 7 6 2 35 35 H 1.08992 * 109.69331 * 283.27911 * 7 6 2 36 36 H 0.97001 * 120.00237 * 0.02562 * 12 10 8 37 37 H 1.09000 * 109.46711 * 60.00240 * 13 12 10 38 38 H 1.08998 * 109.47352 * 299.99956 * 13 12 10 39 39 H 1.09004 * 109.49228 * 54.46876 * 16 14 13 40 40 H 1.08994 * 109.52686 * 294.39401 * 16 14 13 41 41 H 1.08998 * 109.46519 * 178.61847 * 17 16 14 42 42 H 1.09007 * 109.45900 * 58.65670 * 17 16 14 43 43 H 1.09006 * 109.49426 * 301.40910 * 18 17 16 44 44 H 1.09001 * 109.49817 * 181.31389 * 18 17 16 45 45 H 1.08999 * 109.58389 * 65.15234 * 19 18 17 46 46 H 1.08995 * 109.58868 * 185.57886 * 19 18 17 47 47 H 0.97004 * 120.00288 * 180.02562 * 24 23 21 48 48 H 1.08994 * 109.45826 * 49.95985 * 29 8 7 49 49 H 1.09000 * 109.45650 * 169.89846 * 29 8 7 50 50 H 1.08996 * 109.69103 * 283.11703 * 30 5 4 51 51 H 1.09000 * 109.68611 * 43.65170 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2241 1.0443 0.0000 4 7 3.4658 0.6942 0.0005 5 6 3.5327 -0.6332 0.0015 6 6 2.2551 -1.0872 -0.0005 7 6 1.8721 -2.5431 -0.0038 8 6 3.1013 -3.3642 -0.4149 9 1 3.3141 -3.1956 -1.4706 10 6 2.8265 -4.8282 -0.1858 11 8 1.7561 -5.1815 0.2617 12 7 3.7703 -5.7448 -0.4782 13 6 3.5033 -7.1679 -0.2550 14 6 4.7284 -7.9872 -0.6662 15 1 5.5917 -7.6784 -0.0768 16 6 4.4523 -9.4759 -0.4332 17 6 5.6238 -10.2987 -0.9743 18 6 5.7625 -10.0629 -2.4801 19 6 6.0534 -8.5808 -2.7363 20 7 5.0063 -7.7754 -2.0933 21 6 4.3023 -6.8452 -2.8106 22 1 3.2742 -6.6328 -2.5571 23 6 4.9103 -6.1754 -3.8635 24 7 6.2192 -6.2089 -3.9967 25 14 3.8705 -5.2263 -5.0914 26 1 2.4370 -5.3447 -4.7221 27 1 4.2693 -3.7960 -5.0766 28 1 4.0785 -5.7842 -6.4518 29 6 4.3083 -2.9347 0.4233 30 6 4.7468 -1.5243 0.0066 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3633 0.8903 -0.5134 33 1 -0.3633 -0.8897 -0.5142 34 1 1.0644 -2.7087 -0.7167 35 1 1.5489 -2.8401 0.9939 36 1 4.6266 -5.4623 -0.8358 37 1 2.6446 -7.4744 -0.8522 38 1 3.2907 -7.3365 0.8006 39 1 3.5369 -9.7616 -0.9516 40 1 4.3391 -9.6627 0.6346 41 1 5.4411 -11.3570 -0.7878 42 1 6.5429 -9.9951 -0.4731 43 1 4.8348 -10.3431 -2.9792 44 1 6.5822 -10.6670 -2.8689 45 1 7.0246 -8.3210 -2.3150 46 1 6.0550 -8.3889 -3.8092 47 1 6.6441 -5.7405 -4.7323 48 1 4.0357 -2.9340 1.4786 49 1 5.1297 -3.6326 0.2613 50 1 5.1845 -1.5544 -0.9911 51 1 5.4795 -1.1426 0.7177 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024620700.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:06 Heat of formation + Delta-G solvation = 68.125288 kcal Electronic energy + Delta-G solvation = -32116.922934 eV Core-core repulsion = 28053.323039 eV Total energy + Delta-G solvation = -4063.599895 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.41839 -39.68009 -37.92791 -36.44761 -34.95775 -34.23436 -33.11482 -31.15071 -30.56807 -30.11092 -29.89347 -27.94981 -26.23668 -25.13001 -23.91497 -23.12340 -22.19279 -21.44249 -20.79449 -20.24768 -19.36557 -19.03651 -17.42258 -16.98439 -16.59758 -16.14722 -15.65847 -15.39069 -14.86157 -14.49291 -14.10928 -14.02772 -13.94399 -13.85825 -13.49251 -13.43870 -13.34992 -13.29040 -12.93186 -12.85381 -12.47129 -12.17050 -12.07097 -11.94339 -11.75051 -11.55550 -11.26780 -11.11309 -11.04724 -10.90972 -10.83737 -10.60329 -10.51195 -10.33093 -10.19218 -10.04732 -9.99511 -9.60258 -9.48214 -9.23840 -8.83472 -8.64192 -8.28134 -6.71049 -5.90332 -3.36863 1.52601 2.25164 2.54073 3.10140 3.26097 3.37199 3.38412 3.66526 4.16551 4.36705 4.39448 4.58967 4.71809 4.78331 4.85743 4.91995 5.02345 5.17382 5.24173 5.26821 5.39281 5.45801 5.46648 5.48409 5.59479 5.64000 5.65118 5.85355 5.87164 5.92804 6.00374 6.04504 6.05440 6.10642 6.19418 6.27046 6.28655 6.32235 6.37097 6.51443 6.55272 6.66390 6.69060 6.81141 6.93354 7.12066 7.32445 7.58423 7.73569 8.18853 8.34951 8.48764 8.78117 9.10212 9.71905 10.30707 11.16459 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013740 B = 0.003290 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.319266 B = 8509.026141 C = 9350.132493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.286 5.286 3 N -0.104 5.104 4 N -0.263 5.263 5 C -0.018 4.018 6 C -0.013 4.013 7 C -0.022 4.022 8 C -0.103 4.103 9 H 0.106 0.894 10 C 0.516 3.484 11 O -0.566 6.566 12 N -0.689 5.689 13 C 0.134 3.866 14 C 0.160 3.840 15 H 0.032 0.968 16 C -0.127 4.127 17 C -0.107 4.107 18 C -0.144 4.144 19 C 0.174 3.826 20 N -0.588 5.588 21 C -0.252 4.252 22 H 0.069 0.931 23 C 0.011 3.989 24 N -0.896 5.896 25 Si 0.887 3.113 26 H -0.278 1.278 27 H -0.288 1.288 28 H -0.288 1.288 29 C -0.109 4.109 30 C -0.032 4.032 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.416 0.584 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.044 0.956 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.046 0.954 45 H 0.019 0.981 46 H 0.082 0.918 47 H 0.254 0.746 48 H 0.072 0.928 49 H 0.087 0.913 50 H 0.089 0.911 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.854 3.411 8.708 11.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.078 5.078 3 N -0.081 5.081 4 N -0.127 5.127 5 C -0.158 4.158 6 C -0.147 4.147 7 C -0.062 4.062 8 C -0.125 4.125 9 H 0.124 0.876 10 C 0.301 3.699 11 O -0.447 6.447 12 N -0.339 5.339 13 C 0.010 3.990 14 C 0.053 3.947 15 H 0.050 0.950 16 C -0.167 4.167 17 C -0.145 4.145 18 C -0.184 4.184 19 C 0.049 3.951 20 N -0.312 5.312 21 C -0.382 4.382 22 H 0.087 0.913 23 C -0.188 4.188 24 N -0.540 5.540 25 Si 0.717 3.283 26 H -0.203 1.203 27 H -0.215 1.215 28 H -0.215 1.215 29 C -0.147 4.147 30 C -0.071 4.071 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.254 0.746 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.037 0.963 46 H 0.100 0.900 47 H 0.064 0.936 48 H 0.091 0.909 49 H 0.105 0.895 50 H 0.107 0.893 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.493 4.833 8.885 12.019 hybrid contribution -0.382 -0.461 -1.135 1.283 sum -6.874 4.372 7.750 11.245 Atomic orbital electron populations 1.22267 0.72882 1.05939 1.05001 1.46793 1.09109 1.04664 1.47233 1.78541 0.96183 1.11349 1.22072 1.74771 1.09545 1.12080 1.16326 1.21737 0.95143 0.91254 1.07696 1.21910 0.91245 0.92357 1.09226 1.19914 0.97950 0.84357 1.03979 1.21301 0.95805 0.92355 1.03058 0.87583 1.20154 0.84265 0.87480 0.77955 1.90632 1.24933 1.82080 1.47040 1.45980 1.18600 1.06295 1.63022 1.21290 0.98747 0.80107 0.98817 1.20730 0.94140 0.92006 0.87776 0.95036 1.21942 0.98736 0.96948 0.99102 1.21360 0.98083 0.97938 0.97124 1.22196 1.00324 1.00811 0.95030 1.20733 0.89867 0.85187 0.99342 1.44073 1.42567 1.41895 1.02682 1.19198 0.93640 1.14051 1.11270 0.91301 1.25054 0.95003 0.98123 1.00668 1.70008 1.07352 1.44989 1.31616 0.86467 0.80184 0.79674 0.82020 1.20259 1.21517 1.21505 1.21633 0.97074 0.96213 0.99776 1.19984 0.92363 0.91246 1.03529 0.89027 0.88086 0.88182 0.89677 0.88609 0.74587 0.91605 0.92674 0.92126 0.93055 0.93734 0.92859 0.92852 0.93540 0.96296 0.90000 0.93592 0.90933 0.89490 0.89276 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 11.27 59.85 0.67 1.25 16 2 N -0.29 -3.57 3.73 -64.00 -0.24 -3.81 16 3 N -0.10 -1.58 13.19 60.35 0.80 -0.79 16 4 N -0.26 -4.31 12.40 33.16 0.41 -3.90 16 5 C -0.02 -0.26 7.11 -83.12 -0.59 -0.86 16 6 C -0.01 -0.18 6.76 -82.49 -0.56 -0.74 16 7 C -0.02 -0.28 4.71 -27.74 -0.13 -0.41 16 8 C -0.10 -1.42 2.50 -91.49 -0.23 -1.65 16 9 H 0.11 1.55 8.12 -51.93 -0.42 1.12 16 10 C 0.52 8.54 7.15 -10.99 -0.08 8.47 16 11 O -0.57 -10.74 15.82 5.56 0.09 -10.65 16 12 N -0.69 -11.82 3.69 -60.29 -0.22 -12.05 16 13 C 0.13 2.35 4.43 -4.04 -0.02 2.33 16 14 C 0.16 2.89 3.00 -67.60 -0.20 2.69 16 15 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 16 C -0.13 -2.02 5.37 -26.61 -0.14 -2.17 16 17 C -0.11 -1.68 5.88 -26.69 -0.16 -1.83 16 18 C -0.14 -2.56 6.08 -26.61 -0.16 -2.73 16 19 C 0.17 3.75 5.27 -3.71 -0.02 3.73 16 20 N -0.59 -12.68 2.97 -164.78 -0.49 -13.17 16 21 C -0.25 -5.93 6.97 -15.06 -0.11 -6.04 16 22 H 0.07 1.67 5.90 -52.49 -0.31 1.37 16 23 C 0.01 0.28 4.94 -17.43 -0.09 0.19 16 24 N -0.90 -23.27 11.32 55.49 0.63 -22.64 16 25 Si 0.89 20.21 29.58 -169.99 -5.03 15.18 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 C -0.11 -1.29 5.17 -26.44 -0.14 -1.43 16 30 C -0.03 -0.39 6.30 -27.69 -0.17 -0.57 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.57 7.71 -51.93 -0.40 0.17 16 34 H 0.08 1.02 7.87 -51.93 -0.41 0.61 16 35 H 0.10 1.18 7.78 -51.93 -0.40 0.77 16 36 H 0.42 7.46 6.77 -40.82 -0.28 7.18 16 37 H 0.07 1.28 7.38 -51.93 -0.38 0.90 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.08 2.01 6.26 -51.93 -0.33 1.68 16 47 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 48 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 49 H 0.09 1.01 7.30 -51.93 -0.38 0.63 16 50 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 51 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 394.32 15.07 5.94 5.94 Total: -1.00 -30.16 394.32 -8.59 -38.75 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -8.36 Total: 6.88 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -2.12 Total: 0.26 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.89 Total: -56.36 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.16 -8.59 -38.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024620700.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.871 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds