Wall clock time and date at job start Wed Apr 1 2020 05:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47309 * 2 1 4 4 N 1.28522 * 124.43899 * 90.02197 * 3 2 1 5 5 C 1.31130 * 109.05537 * 180.02562 * 4 3 2 6 6 C 1.40922 * 105.78190 * 0.02562 * 5 4 3 7 7 C 1.47799 * 127.24199 * 180.02562 * 6 5 4 8 8 O 1.21560 * 119.99936 * 355.39726 * 7 6 5 9 9 N 1.34780 * 120.00095 * 175.40727 * 7 6 5 10 10 C 1.46925 * 120.62950 * 7.03113 * 9 7 6 11 11 C 1.53194 * 108.77139 * 126.37461 * 10 9 7 12 12 C 1.53037 * 109.31327 * 54.63233 * 11 10 9 13 13 C 1.53035 * 109.54274 * 298.63256 * 12 11 10 14 14 C 1.46924 * 120.62642 * 186.75444 * 9 7 6 15 15 H 1.09002 * 109.58432 * 113.84028 * 14 9 7 16 16 C 1.52991 * 109.58991 * 353.41828 * 14 9 7 17 17 H 1.09003 * 109.87396 * 313.94918 * 16 14 9 18 18 C 1.54325 * 109.88786 * 75.12476 * 16 14 9 19 19 C 1.55148 * 102.94672 * 141.61099 * 18 16 14 20 20 C 1.54910 * 101.58331 * 324.49815 * 19 18 16 21 21 N 1.47022 * 109.88603 * 192.93328 * 16 14 9 22 22 C 1.36940 * 125.64621 * 61.59745 * 21 16 14 23 23 H 1.08003 * 120.00188 * 355.93006 * 22 21 16 24 24 C 1.38816 * 119.99766 * 175.92138 * 22 21 16 25 25 N 1.31615 * 120.00237 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99603 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47719 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47117 * 120.00720 * 26 24 22 29 29 H 1.48504 * 109.46919 * 240.00152 * 26 24 22 30 30 N 1.28587 * 124.44853 * 269.73075 * 3 2 1 31 31 H 1.08998 * 109.47077 * 299.99898 * 1 2 3 32 32 H 1.08999 * 109.47129 * 59.99913 * 1 2 3 33 33 H 1.09002 * 109.47509 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.46734 * 240.00593 * 2 1 3 35 35 H 1.08995 * 109.47335 * 120.00543 * 2 1 3 36 36 H 1.08010 * 127.11168 * 180.02562 * 5 4 3 37 37 H 1.09003 * 109.58724 * 246.16007 * 10 9 7 38 38 H 1.08998 * 109.58575 * 6.44161 * 10 9 7 39 39 H 1.09001 * 109.49664 * 174.58242 * 11 10 9 40 40 H 1.08997 * 109.49755 * 294.67918 * 11 10 9 41 41 H 1.08998 * 109.45829 * 58.65811 * 12 11 10 42 42 H 1.09004 * 109.45703 * 178.61134 * 12 11 10 43 43 H 1.09000 * 109.50160 * 181.31682 * 13 12 11 44 44 H 1.09000 * 109.49505 * 301.38830 * 13 12 11 45 45 H 1.08996 * 110.72084 * 259.97693 * 18 16 14 46 46 H 1.09005 * 110.71697 * 23.24830 * 18 16 14 47 47 H 1.08998 * 111.00978 * 206.42829 * 19 18 16 48 48 H 1.08995 * 111.04165 * 82.58672 * 19 18 16 49 49 H 1.09002 * 110.37186 * 278.17308 * 20 19 18 50 50 H 1.09005 * 110.46400 * 155.89204 * 20 19 18 51 51 H 0.96995 * 120.00043 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2610 2.0663 1.0600 5 6 2.6819 3.2585 0.7121 6 6 2.6837 3.2683 -0.6971 7 6 3.0773 4.3836 -1.5834 8 8 3.3703 5.4634 -1.1079 9 7 3.1113 4.2037 -2.9187 10 6 2.6146 2.9580 -3.5190 11 6 1.5794 3.3069 -4.5929 12 6 2.1989 4.2841 -5.5946 13 6 2.5985 5.5728 -4.8724 14 6 3.6401 5.2519 -3.8020 15 1 4.5545 4.9001 -4.2797 16 6 3.9368 6.5104 -2.9842 17 1 3.0998 6.7268 -2.3203 18 6 5.2261 6.3091 -2.1601 19 6 5.9109 7.6989 -2.2411 20 6 5.5409 8.1447 -3.6779 21 7 4.1679 7.6492 -3.8849 22 6 3.2587 8.1637 -4.7702 23 1 2.2976 7.6873 -4.8954 24 6 3.5724 9.2979 -5.5066 25 7 4.7438 9.8783 -5.3543 26 14 2.3318 10.0002 -6.7137 27 1 1.1008 9.1699 -6.6979 28 1 1.9943 11.3925 -6.3228 29 1 2.9141 9.9970 -8.0799 30 7 2.2655 2.0653 -1.0604 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 2.9680 4.0662 1.3697 37 1 3.4437 2.4153 -3.9732 38 1 2.1518 2.3406 -2.7491 39 1 1.2737 2.3986 -5.1123 40 1 0.7103 3.7686 -4.1242 41 1 3.0822 3.8312 -6.0449 42 1 1.4723 4.5148 -6.3737 43 1 3.0182 6.2772 -5.5905 44 1 1.7198 6.0133 -4.4015 45 1 4.9879 6.0562 -1.1270 46 1 5.8559 5.5420 -2.6107 47 1 6.9911 7.6096 -2.1259 48 1 5.4964 8.3832 -1.5009 49 1 6.2200 7.6940 -4.4017 50 1 5.5682 9.2314 -3.7586 51 1 4.9630 10.6706 -5.8692 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025227650.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:16 Heat of formation + Delta-G solvation = 137.121892 kcal Electronic energy + Delta-G solvation = -32990.904002 eV Core-core repulsion = 28930.296025 eV Total energy + Delta-G solvation = -4060.607977 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.68949 -41.74603 -38.82956 -38.18194 -35.80420 -34.51474 -34.37353 -33.29149 -32.71635 -31.39648 -30.74027 -28.74089 -26.75192 -26.44946 -25.42619 -24.72970 -23.66611 -22.52299 -22.23777 -21.55871 -20.92926 -20.39788 -18.92417 -18.49077 -17.69474 -17.50810 -17.13610 -16.82656 -16.34694 -15.93397 -15.84470 -15.66593 -15.29447 -15.13087 -14.86037 -14.48069 -14.26313 -14.05608 -13.75962 -13.71450 -13.63957 -13.33317 -13.14701 -13.09419 -12.95502 -12.78576 -12.73686 -12.49766 -12.33290 -12.24083 -12.01795 -11.95255 -11.77270 -11.67877 -11.51176 -11.30272 -11.11316 -10.92522 -10.80963 -10.65178 -10.32483 -10.26959 -9.41250 -8.69458 -7.63454 -5.08603 0.25027 0.93087 1.21341 1.47369 1.48696 1.57998 1.99411 2.22233 2.55849 2.88036 3.38139 3.61228 3.81458 3.91679 3.95961 3.98941 4.05223 4.06803 4.10584 4.15977 4.27342 4.28928 4.34841 4.42813 4.50475 4.59512 4.60315 4.67304 4.70723 4.79058 4.85483 4.91332 4.97687 5.00263 5.05661 5.09266 5.11960 5.19745 5.21210 5.30058 5.33834 5.42044 5.54205 5.60818 5.68260 5.74170 5.78113 5.92794 5.94016 6.41282 6.49616 7.05821 7.20071 7.26606 7.91544 8.57610 9.35831 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016449 B = 0.003407 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.843569 B = 8216.577104 C = 9278.186272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.117 3.883 3 N -0.134 5.134 4 N -0.294 5.294 5 C 0.026 3.974 6 C -0.054 4.054 7 C 0.583 3.417 8 O -0.528 6.528 9 N -0.588 5.588 10 C 0.080 3.920 11 C -0.122 4.122 12 C -0.119 4.119 13 C -0.126 4.126 14 C 0.150 3.850 15 H 0.054 0.946 16 C 0.164 3.836 17 H 0.052 0.948 18 C -0.108 4.108 19 C -0.136 4.136 20 C 0.146 3.854 21 N -0.613 5.613 22 C -0.216 4.216 23 H 0.097 0.903 24 C -0.075 4.075 25 N -0.951 5.951 26 Si 0.968 3.032 27 H -0.265 1.265 28 H -0.298 1.298 29 H -0.294 1.294 30 N -0.249 5.249 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.116 0.884 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.218 0.782 37 H 0.071 0.929 38 H 0.137 0.863 39 H 0.101 0.899 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.040 0.960 45 H 0.101 0.899 46 H 0.048 0.952 47 H 0.074 0.926 48 H 0.051 0.949 49 H -0.018 1.018 50 H 0.080 0.920 51 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.223 -25.449 9.345 28.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.000 4.000 3 N -0.038 5.038 4 N -0.134 5.134 5 C -0.156 4.156 6 C -0.215 4.215 7 C 0.370 3.630 8 O -0.404 6.404 9 N -0.321 5.321 10 C -0.042 4.042 11 C -0.160 4.160 12 C -0.157 4.157 13 C -0.164 4.164 14 C 0.045 3.955 15 H 0.072 0.928 16 C 0.058 3.942 17 H 0.069 0.931 18 C -0.145 4.145 19 C -0.174 4.174 20 C 0.020 3.980 21 N -0.338 5.338 22 C -0.345 4.345 23 H 0.114 0.886 24 C -0.266 4.266 25 N -0.602 5.602 26 Si 0.797 3.203 27 H -0.189 1.189 28 H -0.226 1.226 29 H -0.222 1.222 30 N -0.098 5.098 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.135 0.865 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.234 0.766 37 H 0.089 0.911 38 H 0.153 0.847 39 H 0.119 0.881 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.059 0.941 45 H 0.118 0.882 46 H 0.067 0.933 47 H 0.092 0.908 48 H 0.070 0.930 49 H 0.000 1.000 50 H 0.098 0.902 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.554 -26.024 9.469 28.705 hybrid contribution 0.090 1.936 -0.967 2.166 sum -7.465 -24.089 8.502 26.613 Atomic orbital electron populations 1.22176 0.92158 1.05526 1.02573 1.22653 0.96793 0.72286 1.08239 1.49027 1.41703 1.14384 0.98734 1.73995 1.17865 1.05513 1.16063 1.25046 1.01376 0.95749 0.93444 1.23045 1.10028 0.93328 0.95076 1.17161 0.78378 0.85740 0.81734 1.90799 1.48778 1.24747 1.76101 1.48041 1.60880 1.18452 1.04691 1.22700 0.97844 0.85115 0.98579 1.21853 0.97600 1.00209 0.96371 1.21597 1.00926 0.95074 0.98054 1.22186 0.97650 0.98355 0.98201 1.21721 0.95245 0.87583 0.90963 0.92764 1.21583 0.97665 0.85705 0.89265 0.93082 1.22936 0.94432 0.95790 1.01390 1.22863 0.99575 0.97236 0.97754 1.21869 0.84317 1.00750 0.91036 1.45044 1.11293 1.33377 1.44105 1.19816 0.96286 1.05674 1.12705 0.88571 1.25582 0.98879 0.98991 1.03197 1.70005 1.22327 1.22799 1.45107 0.85136 0.78852 0.77892 0.78383 1.18909 1.22558 1.22150 1.74029 1.16230 1.04349 1.15225 0.92640 0.92487 0.86519 0.84918 0.85113 0.76567 0.91089 0.84651 0.88061 0.92905 0.91645 0.91354 0.90037 0.94146 0.88155 0.93348 0.90780 0.92971 1.00024 0.90183 0.94812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 10.24 71.98 0.74 -0.31 16 2 C 0.12 0.87 7.24 86.38 0.63 1.50 16 3 N -0.13 -2.41 3.94 -187.50 -0.74 -3.15 16 4 N -0.29 -6.27 12.01 -56.16 -0.67 -6.94 16 5 C 0.03 0.62 12.05 85.46 1.03 1.64 16 6 C -0.05 -1.45 6.95 42.24 0.29 -1.16 16 7 C 0.58 19.24 7.31 86.77 0.63 19.88 16 8 O -0.53 -20.33 9.69 -3.90 -0.04 -20.37 16 9 N -0.59 -18.81 2.98 -799.26 -2.38 -21.19 16 10 C 0.08 1.94 6.23 86.36 0.54 2.47 16 11 C -0.12 -2.79 6.08 30.67 0.19 -2.61 16 12 C -0.12 -3.35 5.88 30.62 0.18 -3.17 16 13 C -0.13 -4.82 3.59 30.53 0.11 -4.71 16 14 C 0.15 5.78 2.65 44.83 0.12 5.90 16 15 H 0.05 2.18 7.82 -2.39 -0.02 2.16 16 16 C 0.16 7.43 2.31 45.34 0.10 7.54 16 17 H 0.05 2.59 5.91 -6.57 -0.04 2.55 16 18 C -0.11 -4.45 5.36 31.78 0.17 -4.28 16 19 C -0.14 -5.92 7.08 31.98 0.23 -5.69 16 20 C 0.15 7.76 6.06 86.85 0.53 8.28 16 21 N -0.61 -32.76 3.10 -668.24 -2.07 -34.83 16 22 C -0.22 -12.08 7.71 84.03 0.65 -11.43 16 23 H 0.10 5.13 5.01 -2.91 -0.01 5.12 16 24 C -0.08 -4.33 5.49 84.86 0.47 -3.87 16 25 N -0.95 -58.37 10.03 21.65 0.22 -58.15 16 26 Si 0.97 46.71 29.55 68.60 2.03 48.74 16 27 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 28 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 29 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 30 N -0.25 -5.48 8.53 -48.17 -0.41 -5.89 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.13 0.44 8.14 -2.38 -0.02 0.42 16 35 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.22 4.41 8.06 -2.91 -0.02 4.38 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.14 2.98 3.96 -51.19 -0.20 2.78 16 39 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 42 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 43 H 0.08 3.70 5.44 -2.39 -0.01 3.69 16 44 H 0.04 1.67 7.29 -2.39 -0.02 1.65 16 45 H 0.10 4.02 5.47 -24.31 -0.13 3.89 16 46 H 0.05 1.90 7.64 -2.38 -0.02 1.88 16 47 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 48 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 49 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 50 H 0.08 4.82 5.61 -2.38 -0.01 4.81 16 51 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -72.88 379.72 3.13 -69.75 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.60 Total: 22.04 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 6.59 Total: 9.99 kcal Atomic # 7 Polarization: -124.09 SS G_CDS: -6.06 Total: -130.15 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.04 Total: -20.37 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -72.88 3.13 -69.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025227650.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.869 kcal (2) G-P(sol) polarization free energy of solvation -72.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds