Wall clock time and date at job start Wed Apr 1 2020 05:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47071 * 2 1 4 4 N 1.28512 * 124.44240 * 89.98302 * 3 2 1 5 5 C 1.31132 * 109.06081 * 180.02562 * 4 3 2 6 6 C 1.40925 * 105.77618 * 359.97438 * 5 4 3 7 7 C 1.47799 * 127.23960 * 180.02562 * 6 5 4 8 8 O 1.21560 * 119.99702 * 1.68899 * 7 6 5 9 9 N 1.34773 * 120.00129 * 181.69978 * 7 6 5 10 10 C 1.46924 * 120.63152 * 5.88880 * 9 7 6 11 11 C 1.53202 * 108.77356 * 126.37542 * 10 9 7 12 12 C 1.53039 * 109.31066 * 54.63896 * 11 10 9 13 13 C 1.53042 * 109.53577 * 298.63460 * 12 11 10 14 14 C 1.46932 * 120.63035 * 185.87597 * 9 7 6 15 15 H 1.09002 * 109.58471 * 113.69565 * 14 9 7 16 16 C 1.52998 * 109.58608 * 353.41149 * 14 9 7 17 17 H 1.09003 * 109.87436 * 51.49902 * 16 14 9 18 18 C 1.54321 * 110.01082 * 290.40103 * 16 14 9 19 19 C 1.55164 * 102.93908 * 218.31805 * 18 16 14 20 20 C 1.54903 * 101.58186 * 35.49964 * 19 18 16 21 21 N 1.47018 * 109.88099 * 172.50772 * 16 14 9 22 22 C 1.36942 * 125.65489 * 298.55236 * 21 16 14 23 23 H 1.07999 * 119.99666 * 341.70912 * 22 21 16 24 24 C 1.38811 * 120.00141 * 161.70809 * 22 21 16 25 25 N 1.31618 * 120.00002 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99697 * 179.97438 * 24 22 21 27 27 H 1.48491 * 109.47365 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.46774 * 120.00278 * 26 24 22 29 29 H 1.48504 * 109.46764 * 239.99948 * 26 24 22 30 30 N 1.28587 * 124.44365 * 270.31274 * 3 2 1 31 31 H 1.09004 * 109.46388 * 299.99988 * 1 2 3 32 32 H 1.09000 * 109.46925 * 59.99613 * 1 2 3 33 33 H 1.09002 * 109.47262 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.46895 * 240.00111 * 2 1 3 35 35 H 1.08998 * 109.47055 * 120.00923 * 2 1 3 36 36 H 1.07996 * 127.11545 * 180.02562 * 5 4 3 37 37 H 1.08991 * 109.59179 * 246.16229 * 10 9 7 38 38 H 1.09004 * 109.58679 * 6.45255 * 10 9 7 39 39 H 1.08998 * 109.49421 * 174.59102 * 11 10 9 40 40 H 1.09001 * 109.49353 * 294.65523 * 11 10 9 41 41 H 1.08995 * 109.46428 * 58.65432 * 12 11 10 42 42 H 1.08996 * 109.45753 * 178.63092 * 12 11 10 43 43 H 1.09003 * 109.49704 * 301.41415 * 13 12 11 44 44 H 1.09007 * 109.49661 * 181.32018 * 13 12 11 45 45 H 1.08998 * 110.72600 * 99.95642 * 18 16 14 46 46 H 1.08993 * 110.72106 * 336.67499 * 18 16 14 47 47 H 1.09001 * 111.00040 * 277.42421 * 19 18 16 48 48 H 1.08998 * 111.00309 * 153.57533 * 19 18 16 49 49 H 1.08998 * 110.36762 * 81.82982 * 20 19 18 50 50 H 1.09003 * 110.37047 * 204.04534 * 20 19 18 51 51 H 0.96995 * 119.99939 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2603 2.0666 1.0598 5 6 2.6814 3.2588 0.7120 6 6 2.6852 3.2677 -0.6972 7 6 3.0798 4.3827 -1.5835 8 8 3.4813 5.4259 -1.1058 9 7 2.9943 4.2429 -2.9212 10 6 2.3917 3.0398 -3.5112 11 6 1.2884 3.4676 -4.4842 12 6 1.8679 4.4467 -5.5077 13 6 2.3862 5.6933 -4.7869 14 6 3.5019 5.2909 -3.8174 15 1 4.3561 4.9105 -4.3775 16 6 3.9292 6.5074 -2.9937 17 1 4.6020 6.1960 -2.1946 18 6 2.6881 7.2016 -2.3942 19 6 3.0423 8.7077 -2.5107 20 6 3.8260 8.7405 -3.8465 21 7 4.6014 7.4866 -3.8601 22 6 5.7560 7.2699 -4.5638 23 1 6.4060 6.4502 -4.2955 24 6 6.0909 8.1037 -5.6218 25 7 5.2990 9.1029 -5.9484 26 14 7.6663 7.8083 -6.5812 27 1 8.3757 6.6317 -6.0179 28 1 7.3373 7.5530 -8.0066 29 1 8.5385 9.0061 -6.4813 30 7 2.2553 2.0688 -1.0604 31 1 -0.3632 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5140 0.8899 36 1 2.9670 4.0665 1.3695 37 1 3.1537 2.4751 -4.0482 38 1 1.9657 2.4200 -2.7221 39 1 0.8983 2.5903 -5.0003 40 1 0.4836 3.9523 -3.9314 41 1 2.6886 3.9692 -6.0429 42 1 1.0907 4.7339 -6.2160 43 1 1.5713 6.1575 -4.2314 44 1 2.7775 6.4003 -5.5185 45 1 2.5532 6.9168 -1.3508 46 1 1.7969 6.9689 -2.9769 47 1 3.6723 9.0263 -1.6802 48 1 2.1409 9.3175 -2.5715 49 1 3.1365 8.7693 -4.6902 50 1 4.4937 9.6016 -3.8737 51 1 5.5328 9.6853 -6.6880 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025227651.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:22 Heat of formation + Delta-G solvation = 146.513647 kcal Electronic energy + Delta-G solvation = -32998.867666 eV Core-core repulsion = 28938.666945 eV Total energy + Delta-G solvation = -4060.200720 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.76098 -40.35322 -37.25090 -36.63262 -35.12085 -33.26334 -32.40440 -32.16922 -31.11090 -30.35789 -29.11807 -27.17044 -25.43389 -24.60549 -24.24241 -23.71694 -22.50140 -21.69487 -20.80523 -20.14734 -19.60933 -18.27196 -17.65483 -17.03056 -16.77055 -16.11867 -15.42102 -15.25862 -15.09100 -14.75603 -14.62658 -14.44436 -13.99948 -13.86958 -13.63109 -13.24630 -13.17046 -12.98563 -12.77024 -12.66338 -12.10739 -12.00634 -11.89411 -11.76229 -11.48373 -11.27279 -11.17818 -11.00601 -10.81515 -10.77677 -10.56324 -10.45679 -10.35418 -10.07956 -9.95934 -9.84572 -9.62485 -9.54110 -9.43213 -9.20125 -8.78114 -8.43709 -7.95924 -6.52879 -5.64369 -2.98685 1.28147 1.91157 1.95164 3.24514 3.43907 3.46693 3.50935 3.52589 3.81017 4.36350 4.40089 4.59116 4.64340 4.75306 4.94708 5.03261 5.14927 5.16018 5.21223 5.29931 5.51031 5.51314 5.52922 5.59454 5.69503 5.70509 5.78661 5.88550 5.98073 6.02144 6.09317 6.15894 6.18755 6.21741 6.32390 6.45838 6.54292 6.61656 6.64979 6.71033 6.82879 6.93885 7.04833 7.15292 7.19779 7.60262 7.69109 7.74764 7.82556 7.93412 8.04568 8.39770 8.57561 9.33585 9.95841 10.68871 11.48187 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016135 B = 0.003266 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.945839 B = 8571.377271 C = 8896.557232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.150 5.150 4 N -0.292 5.292 5 C 0.030 3.970 6 C -0.030 4.030 7 C 0.585 3.415 8 O -0.497 6.497 9 N -0.586 5.586 10 C 0.082 3.918 11 C -0.129 4.129 12 C -0.121 4.121 13 C -0.125 4.125 14 C 0.137 3.863 15 H 0.076 0.924 16 C 0.163 3.837 17 H 0.075 0.925 18 C -0.125 4.125 19 C -0.151 4.151 20 C 0.177 3.823 21 N -0.594 5.594 22 C -0.223 4.223 23 H 0.070 0.930 24 C -0.003 4.003 25 N -0.915 5.915 26 Si 0.902 3.098 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 N -0.256 5.256 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.207 0.793 37 H 0.061 0.939 38 H 0.122 0.878 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.055 0.945 47 H 0.054 0.946 48 H 0.049 0.951 49 H 0.024 0.976 50 H 0.058 0.942 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.163 -18.441 9.813 24.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 N -0.052 5.052 4 N -0.132 5.132 5 C -0.153 4.153 6 C -0.192 4.192 7 C 0.370 3.630 8 O -0.372 6.372 9 N -0.318 5.318 10 C -0.042 4.042 11 C -0.167 4.167 12 C -0.159 4.159 13 C -0.163 4.163 14 C 0.034 3.966 15 H 0.094 0.906 16 C 0.056 3.944 17 H 0.092 0.908 18 C -0.162 4.162 19 C -0.190 4.190 20 C 0.052 3.948 21 N -0.319 5.319 22 C -0.352 4.352 23 H 0.088 0.912 24 C -0.200 4.200 25 N -0.561 5.561 26 Si 0.733 3.267 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.219 1.219 30 N -0.103 5.103 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.224 0.776 37 H 0.079 0.921 38 H 0.139 0.861 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.102 0.898 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.068 0.932 49 H 0.042 0.958 50 H 0.076 0.924 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.259 -19.055 9.899 24.726 hybrid contribution 1.063 0.572 -0.900 1.506 sum -11.196 -18.483 9.000 23.409 Atomic orbital electron populations 1.22192 0.92998 1.03942 1.03840 1.22051 0.96131 0.74528 1.05977 1.48430 1.43947 1.13285 0.99534 1.73960 1.17809 1.05652 1.15729 1.24819 1.01491 0.95125 0.93842 1.23539 1.07268 0.93442 0.94998 1.16848 0.79979 0.84557 0.81652 1.90838 1.45789 1.25069 1.75474 1.48079 1.58606 1.20557 1.04574 1.22443 0.95699 0.87385 0.98646 1.21875 0.97989 0.99378 0.97474 1.21564 1.00199 0.96666 0.97446 1.21992 0.98308 0.97116 0.98884 1.22214 0.95203 0.88205 0.91004 0.90649 1.21712 0.93772 0.87681 0.91247 0.90826 1.23066 0.97023 0.95022 1.01094 1.23010 0.99242 0.96078 1.00629 1.21303 0.92860 0.89949 0.90709 1.44687 1.25049 1.08203 1.53962 1.18985 0.96249 1.12783 1.07180 0.91173 1.24923 0.98522 0.98813 0.97750 1.69958 1.37217 1.18594 1.30359 0.86184 0.83074 0.77445 0.79966 1.20525 1.21865 1.21893 1.74209 1.16493 1.05022 1.14580 0.91343 0.91270 0.89544 0.87220 0.87255 0.77631 0.92104 0.86121 0.91576 0.92105 0.92134 0.92415 0.91651 0.89337 0.89804 0.92674 0.92692 0.93214 0.95808 0.92383 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 10.24 37.16 0.38 -0.41 16 2 C 0.13 0.75 7.24 -4.04 -0.03 0.72 16 3 N -0.15 -1.56 3.94 -10.61 -0.04 -1.60 16 4 N -0.29 -3.44 12.00 30.90 0.37 -3.06 16 5 C 0.03 0.38 12.04 -16.84 -0.20 0.18 16 6 C -0.03 -0.42 6.93 -82.68 -0.57 -0.99 16 7 C 0.58 9.76 7.32 -12.35 -0.09 9.67 16 8 O -0.50 -9.44 9.81 5.31 0.05 -9.39 16 9 N -0.59 -9.61 2.95 -166.34 -0.49 -10.10 16 10 C 0.08 1.10 6.20 -3.71 -0.02 1.07 16 11 C -0.13 -1.60 6.08 -26.61 -0.16 -1.76 16 12 C -0.12 -1.77 5.88 -26.69 -0.16 -1.93 16 13 C -0.13 -2.28 4.95 -26.61 -0.13 -2.41 16 14 C 0.14 2.67 2.72 -67.60 -0.18 2.49 16 15 H 0.08 1.63 7.77 -51.93 -0.40 1.22 16 16 C 0.16 3.59 2.28 -66.96 -0.15 3.44 16 17 H 0.07 1.79 5.77 -52.47 -0.30 1.49 16 18 C -0.12 -2.51 5.19 -24.89 -0.13 -2.64 16 19 C -0.15 -3.17 7.09 -24.58 -0.17 -3.34 16 20 C 0.18 4.45 5.37 -2.53 -0.01 4.44 16 21 N -0.59 -15.32 2.86 -162.57 -0.46 -15.79 16 22 C -0.22 -6.23 9.64 -15.06 -0.15 -6.37 16 23 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 24 C 0.00 -0.09 5.46 -17.43 -0.10 -0.18 16 25 N -0.91 -26.93 10.73 55.49 0.60 -26.33 16 26 Si 0.90 22.31 29.55 -169.99 -5.02 17.28 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 30 N -0.26 -3.14 8.55 33.42 0.29 -2.85 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.21 2.17 8.06 -52.49 -0.42 1.75 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.12 1.50 4.00 -84.67 -0.34 1.16 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 1.19 5.47 -51.93 -0.28 0.91 16 44 H 0.09 1.93 8.03 -51.93 -0.42 1.51 16 45 H 0.08 1.67 5.62 -51.83 -0.29 1.38 16 46 H 0.05 1.07 5.10 -51.93 -0.26 0.81 16 47 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.02 0.64 7.97 -51.93 -0.41 0.23 16 50 H 0.06 1.62 7.20 -51.93 -0.37 1.25 16 51 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 385.19 15.07 5.80 5.80 Total: -1.00 -32.36 385.19 -8.93 -41.29 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -8.13 Total: 2.78 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -1.88 Total: 1.97 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: 0.25 Total: -59.74 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.05 Total: -9.39 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.36 -8.93 -41.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025227651.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.799 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds