Wall clock time and date at job start Wed Apr 1 2020 05:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36933 * 120.00361 * 2 1 4 4 H 1.07998 * 119.99994 * 199.76818 * 3 2 1 5 5 C 1.38811 * 120.00059 * 19.77610 * 3 2 1 6 6 N 1.31628 * 119.99881 * 15.31391 * 5 3 2 7 7 Si 1.86797 * 120.00146 * 195.31879 * 5 3 2 8 8 H 1.48497 * 109.47162 * 59.99887 * 7 5 3 9 9 H 1.48509 * 109.47021 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46909 * 299.99527 * 7 5 3 11 11 C 1.46504 * 119.99807 * 180.02562 * 2 1 3 12 12 H 1.08994 * 109.52628 * 180.02562 * 11 2 1 13 13 C 1.53041 * 109.49987 * 59.99506 * 11 2 1 14 14 C 1.53037 * 109.53997 * 178.68231 * 13 11 2 15 15 C 1.53194 * 109.31180 * 61.36709 * 14 13 11 16 16 N 1.46925 * 108.77658 * 305.36641 * 15 14 13 17 17 C 1.34777 * 120.62870 * 233.62597 * 16 15 14 18 18 O 1.21280 * 119.99522 * 176.47768 * 17 16 15 19 19 C 1.50692 * 120.00164 * 356.48547 * 17 16 15 20 20 H 1.08997 * 109.46089 * 52.32425 * 19 17 16 21 21 C 1.53112 * 109.45798 * 292.35640 * 19 17 16 22 22 C 1.53423 * 109.57535 * 169.90569 * 21 19 17 23 23 C 1.50595 * 108.33725 * 49.82218 * 22 21 19 24 24 N 1.32900 * 129.16612 * 163.47884 * 23 22 21 25 25 N 1.29026 * 108.63667 * 180.13948 * 24 23 22 26 26 N 1.29103 * 110.25500 * 359.97438 * 25 24 23 27 27 C 1.46504 * 126.00026 * 179.91429 * 26 25 24 28 28 C 1.34395 * 107.99062 * 359.93680 * 26 25 24 29 29 C 1.50521 * 129.25989 * 180.22008 * 28 26 25 30 30 C 1.46932 * 118.73820 * 53.60534 * 16 15 14 31 31 H 1.09000 * 109.46754 * 274.93036 * 1 2 3 32 32 H 1.09000 * 109.46904 * 34.92925 * 1 2 3 33 33 H 1.09000 * 109.46953 * 154.93226 * 1 2 3 34 34 H 0.96994 * 119.99961 * 180.02562 * 6 5 3 35 35 H 1.09002 * 109.46097 * 298.70992 * 13 11 2 36 36 H 1.09006 * 109.45592 * 58.66367 * 13 11 2 37 37 H 1.09001 * 109.49707 * 181.31895 * 14 13 11 38 38 H 1.08998 * 109.50213 * 301.41968 * 14 13 11 39 39 H 1.09003 * 109.58630 * 185.57304 * 15 14 13 40 40 H 1.09008 * 109.69969 * 65.22268 * 15 14 13 41 41 H 1.08995 * 109.45417 * 289.94213 * 21 19 17 42 42 H 1.09006 * 109.44987 * 49.87577 * 21 19 17 43 43 H 1.08998 * 109.68741 * 169.53318 * 22 21 19 44 44 H 1.08998 * 109.69257 * 290.10564 * 22 21 19 45 45 H 1.08996 * 109.47329 * 89.98026 * 27 26 25 46 46 H 1.09006 * 109.46482 * 209.97353 * 27 26 25 47 47 H 1.08995 * 109.47378 * 329.97049 * 27 26 25 48 48 H 1.08996 * 109.68411 * 43.75894 * 29 28 26 49 49 H 1.09005 * 109.70199 * 283.17321 * 29 28 26 50 50 H 1.08996 * 109.58345 * 186.60593 * 30 16 15 51 51 H 1.08996 * 109.70148 * 66.25067 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1820 1.2133 -0.3163 5 6 1.5172 2.3526 0.4067 6 7 0.3814 2.2889 1.0689 7 14 2.2777 4.0130 0.0143 8 1 2.4003 4.1658 -1.4577 9 1 1.4130 5.0933 0.5533 10 1 3.6240 4.0998 0.6349 11 6 2.1975 -1.2688 -0.0006 12 1 3.2693 -1.0707 0.0000 13 6 1.8281 -2.0713 -1.2502 14 6 2.6174 -3.3823 -1.2684 15 6 2.2495 -4.2124 -0.0345 16 7 2.4653 -3.3948 1.1670 17 6 3.2364 -3.8467 2.1757 18 8 3.4588 -3.1370 3.1337 19 6 3.8222 -5.2337 2.1132 20 1 4.3495 -5.3629 1.1681 21 6 2.6975 -6.2675 2.2152 22 6 3.2520 -7.6631 1.9011 23 6 4.4913 -7.8779 2.7293 24 7 5.1253 -9.0110 3.0129 25 7 6.1429 -8.7387 3.7580 26 7 6.2081 -7.4683 3.9787 27 6 7.2248 -6.7849 4.7822 28 6 5.1791 -6.8831 3.3424 29 6 4.8039 -5.4269 3.2765 30 6 1.8248 -2.0748 1.2477 31 1 -0.3633 0.0883 1.0239 32 1 -0.3633 0.8425 -0.5884 33 1 -0.3633 -0.9309 -0.4354 34 1 -0.0608 3.1042 1.3528 35 1 0.7604 -2.2904 -1.2387 36 1 2.0697 -1.4896 -2.1399 37 1 2.3714 -3.9426 -2.1704 38 1 3.6853 -3.1643 -1.2549 39 1 2.8800 -5.1005 0.0097 40 1 1.2024 -4.5101 -0.0908 41 1 2.2868 -6.2588 3.2248 42 1 1.9114 -6.0202 1.5017 43 1 2.5075 -8.4189 2.1512 44 1 3.5018 -7.7293 0.8422 45 1 8.0613 -6.5002 4.1440 46 1 6.7916 -5.8921 5.2333 47 1 7.5777 -7.4538 5.5671 48 1 5.6968 -4.8250 3.1075 49 1 4.3294 -5.1270 4.2109 50 1 2.1750 -1.5526 2.1379 51 1 0.7424 -2.1940 1.2960 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027545043.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:42 Heat of formation + Delta-G solvation = 84.921297 kcal Electronic energy + Delta-G solvation = -31681.618865 eV Core-core repulsion = 27618.747300 eV Total energy + Delta-G solvation = -4062.871565 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.64541 -40.38908 -37.84225 -36.67423 -35.15650 -35.13099 -32.45204 -31.35524 -30.86313 -30.66939 -28.73209 -28.12883 -26.04655 -25.72927 -24.44871 -23.54378 -23.08979 -21.72643 -21.63985 -20.37714 -19.25432 -18.64211 -17.57290 -17.24568 -16.81484 -16.72636 -15.71400 -15.32430 -14.93990 -14.78764 -14.31201 -14.18591 -14.10619 -14.05830 -13.86143 -13.62822 -13.48612 -13.44274 -13.17062 -12.70356 -12.60922 -12.49115 -12.27132 -12.22337 -11.87924 -11.75991 -11.47582 -11.30390 -11.11651 -11.02854 -10.81144 -10.78839 -10.63738 -10.43806 -10.37739 -10.21522 -10.20667 -9.86906 -9.79821 -9.54131 -9.07021 -8.60665 -8.35712 -6.81348 -5.74426 -3.17740 1.31293 2.05286 2.30788 2.71090 3.09043 3.38707 3.43995 3.44902 3.85983 4.11987 4.30626 4.43965 4.48016 4.50699 4.57974 4.59875 4.80111 4.85102 4.89725 4.97268 5.08239 5.13571 5.17476 5.24304 5.31835 5.40861 5.48899 5.53964 5.56117 5.60336 5.66744 5.74734 5.76421 5.85598 5.89852 5.96078 6.01218 6.08777 6.19762 6.30189 6.33937 6.46229 6.62769 6.74060 6.89689 6.94489 7.36303 7.60593 7.68591 7.79534 8.27446 8.30019 8.37264 9.21049 9.84468 10.31626 11.30577 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019225 B = 0.002434 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.087979 B =11501.443594 C =12309.992274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.592 5.592 3 C -0.256 4.256 4 H 0.069 0.931 5 C 0.002 3.998 6 N -0.906 5.906 7 Si 0.905 3.095 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.170 3.830 12 H 0.064 0.936 13 C -0.134 4.134 14 C -0.132 4.132 15 C 0.104 3.896 16 N -0.603 5.603 17 C 0.517 3.483 18 O -0.540 6.540 19 C -0.101 4.101 20 H 0.102 0.898 21 C -0.115 4.115 22 C -0.029 4.029 23 C -0.022 4.022 24 N -0.262 5.262 25 N -0.100 5.100 26 N -0.284 5.284 27 C 0.079 3.921 28 C -0.012 4.012 29 C -0.027 4.027 30 C 0.097 3.903 31 H 0.029 0.971 32 H 0.044 0.956 33 H 0.000 1.000 34 H 0.253 0.747 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.101 0.899 47 H 0.102 0.898 48 H 0.086 0.914 49 H 0.100 0.900 50 H 0.091 0.909 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.460 -19.692 1.177 21.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.314 5.314 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.060 3.940 12 H 0.082 0.918 13 C -0.174 4.174 14 C -0.171 4.171 15 C -0.020 4.020 16 N -0.336 5.336 17 C 0.304 3.696 18 O -0.417 6.417 19 C -0.123 4.123 20 H 0.120 0.880 21 C -0.153 4.153 22 C -0.068 4.068 23 C -0.162 4.162 24 N -0.127 5.127 25 N -0.078 5.078 26 N -0.076 5.076 27 C -0.063 4.063 28 C -0.146 4.146 29 C -0.066 4.066 30 C -0.026 4.026 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.018 0.982 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.104 0.896 45 H 0.111 0.889 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.105 0.895 49 H 0.118 0.882 50 H 0.109 0.891 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.152 -20.513 2.063 22.170 hybrid contribution 0.075 2.036 -0.234 2.051 sum 8.228 -18.477 1.829 20.309 Atomic orbital electron populations 1.20797 0.82507 0.95604 0.99410 1.43961 1.01891 1.00043 1.85467 1.19180 0.96661 0.84728 1.37963 0.91359 1.24958 0.97854 0.98347 0.98475 1.70082 1.18581 1.26889 1.39536 0.86328 0.78375 0.83730 0.78072 1.21128 1.21641 1.20956 1.20606 0.96412 0.86175 0.90796 0.91815 1.22098 0.99673 0.94971 1.00616 1.21914 1.01036 0.97310 0.96798 1.21864 1.01460 0.93710 0.84916 1.48257 1.48812 1.19147 1.17349 1.20285 0.78722 0.87978 0.82616 1.90713 1.59707 1.58235 1.33090 1.21303 0.97233 0.93421 1.00307 0.88016 1.21738 0.96980 0.92544 1.04038 1.19942 0.91625 0.97086 0.98189 1.21680 1.01138 0.88732 1.04691 1.74783 1.02310 1.24681 1.10896 1.78576 1.17333 0.94832 1.17079 1.46826 1.20159 1.06570 1.34026 1.22311 0.89964 0.98279 0.95714 1.21858 0.92394 0.98601 1.01796 1.19946 0.99617 0.86779 1.00301 1.22562 0.96712 0.80904 1.02427 0.95313 0.93733 0.98163 0.93668 0.92212 0.91704 0.91163 0.91764 0.90018 0.91269 0.90534 0.89441 0.89264 0.89603 0.88889 0.88037 0.87923 0.89530 0.88222 0.89056 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.81 7.91 59.85 0.47 4.28 16 2 N -0.59 -14.25 2.82 -173.35 -0.49 -14.74 16 3 C -0.26 -6.91 9.62 -15.06 -0.14 -7.05 16 4 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 5 C 0.00 0.06 5.06 -17.43 -0.09 -0.03 16 6 N -0.91 -26.11 10.65 55.49 0.59 -25.51 16 7 Si 0.90 21.72 29.58 -169.99 -5.03 16.70 16 8 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 C 0.17 3.27 2.74 -67.81 -0.19 3.09 16 12 H 0.06 1.32 7.85 -51.93 -0.41 0.91 16 13 C -0.13 -2.06 5.13 -26.69 -0.14 -2.19 16 14 C -0.13 -1.47 6.08 -26.61 -0.16 -1.63 16 15 C 0.10 1.04 4.91 -3.71 -0.02 1.02 16 16 N -0.60 -8.33 2.97 -172.77 -0.51 -8.84 16 17 C 0.52 7.16 6.98 -10.99 -0.08 7.09 16 18 O -0.54 -9.74 15.19 5.56 0.08 -9.66 16 19 C -0.10 -0.97 1.65 -91.49 -0.15 -1.12 16 20 H 0.10 0.84 7.09 -51.93 -0.37 0.47 16 21 C -0.11 -0.92 4.74 -26.45 -0.13 -1.05 16 22 C -0.03 -0.23 6.30 -27.72 -0.17 -0.41 16 23 C -0.02 -0.25 7.11 -83.13 -0.59 -0.84 16 24 N -0.26 -3.53 12.40 33.16 0.41 -3.12 16 25 N -0.10 -1.28 13.19 60.35 0.80 -0.49 16 26 N -0.28 -2.84 3.73 -64.01 -0.24 -3.08 16 27 C 0.08 0.41 11.27 59.85 0.67 1.08 16 28 C -0.01 -0.13 6.76 -82.50 -0.56 -0.68 16 29 C -0.03 -0.26 4.76 -27.75 -0.13 -0.39 16 30 C 0.10 1.76 5.80 -3.71 -0.02 1.74 16 31 H 0.03 0.74 7.42 -51.93 -0.39 0.35 16 32 H 0.04 1.14 7.17 -51.93 -0.37 0.77 16 33 H 0.00 0.00 6.46 -51.93 -0.34 -0.34 16 34 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.06 0.92 6.72 -51.93 -0.35 0.57 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.60 5.08 -51.93 -0.26 0.33 16 40 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 41 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 42 H 0.09 0.61 6.08 -51.93 -0.32 0.30 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.10 0.39 7.96 -51.93 -0.41 -0.03 16 47 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.10 1.04 7.66 -51.93 -0.40 0.64 16 50 H 0.09 1.98 7.00 -51.93 -0.36 1.62 16 51 H 0.06 1.13 7.51 -51.93 -0.39 0.74 16 LS Contribution 390.18 15.07 5.88 5.88 Total: -1.00 -34.46 390.18 -8.06 -42.51 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -8.13 Total: -2.56 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -1.42 Total: 2.91 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 0.56 Total: -55.79 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.08 Total: -9.66 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.46 -8.06 -42.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027545043.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.435 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds