Wall clock time and date at job start Wed Apr 1 2020 05:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36933 * 120.00361 * 2 1 4 4 H 1.07998 * 119.99994 * 199.76818 * 3 2 1 5 5 C 1.38811 * 120.00059 * 19.77610 * 3 2 1 6 6 N 1.31628 * 119.99881 * 15.31391 * 5 3 2 7 7 Si 1.86797 * 120.00146 * 195.31879 * 5 3 2 8 8 H 1.48497 * 109.47162 * 59.99887 * 7 5 3 9 9 H 1.48509 * 109.47021 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46909 * 299.99527 * 7 5 3 11 11 C 1.46504 * 119.99807 * 180.02562 * 2 1 3 12 12 H 1.08994 * 109.52628 * 180.02562 * 11 2 1 13 13 C 1.53041 * 109.49987 * 59.99506 * 11 2 1 14 14 C 1.53037 * 109.53997 * 178.68231 * 13 11 2 15 15 C 1.53194 * 109.31180 * 61.36709 * 14 13 11 16 16 N 1.46925 * 108.77658 * 305.36641 * 15 14 13 17 17 C 1.34777 * 120.62870 * 233.62597 * 16 15 14 18 18 O 1.21280 * 119.99522 * 176.47768 * 17 16 15 19 19 C 1.50692 * 120.00164 * 356.48547 * 17 16 15 20 20 H 1.08997 * 109.46089 * 52.32425 * 19 17 16 21 21 C 1.53112 * 109.45798 * 292.35640 * 19 17 16 22 22 C 1.53423 * 109.57535 * 169.90569 * 21 19 17 23 23 C 1.50595 * 108.33725 * 49.82218 * 22 21 19 24 24 N 1.32900 * 129.16612 * 163.47884 * 23 22 21 25 25 N 1.29026 * 108.63667 * 180.13948 * 24 23 22 26 26 N 1.29103 * 110.25500 * 359.97438 * 25 24 23 27 27 C 1.46504 * 126.00026 * 179.91429 * 26 25 24 28 28 C 1.34395 * 107.99062 * 359.93680 * 26 25 24 29 29 C 1.50521 * 129.25989 * 180.22008 * 28 26 25 30 30 C 1.46932 * 118.73820 * 53.60534 * 16 15 14 31 31 H 1.09000 * 109.46754 * 274.93036 * 1 2 3 32 32 H 1.09000 * 109.46904 * 34.92925 * 1 2 3 33 33 H 1.09000 * 109.46953 * 154.93226 * 1 2 3 34 34 H 0.96994 * 119.99961 * 180.02562 * 6 5 3 35 35 H 1.09002 * 109.46097 * 298.70992 * 13 11 2 36 36 H 1.09006 * 109.45592 * 58.66367 * 13 11 2 37 37 H 1.09001 * 109.49707 * 181.31895 * 14 13 11 38 38 H 1.08998 * 109.50213 * 301.41968 * 14 13 11 39 39 H 1.09003 * 109.58630 * 185.57304 * 15 14 13 40 40 H 1.09008 * 109.69969 * 65.22268 * 15 14 13 41 41 H 1.08995 * 109.45417 * 289.94213 * 21 19 17 42 42 H 1.09006 * 109.44987 * 49.87577 * 21 19 17 43 43 H 1.08998 * 109.68741 * 169.53318 * 22 21 19 44 44 H 1.08998 * 109.69257 * 290.10564 * 22 21 19 45 45 H 1.08996 * 109.47329 * 89.98026 * 27 26 25 46 46 H 1.09006 * 109.46482 * 209.97353 * 27 26 25 47 47 H 1.08995 * 109.47378 * 329.97049 * 27 26 25 48 48 H 1.08996 * 109.68411 * 43.75894 * 29 28 26 49 49 H 1.09005 * 109.70199 * 283.17321 * 29 28 26 50 50 H 1.08996 * 109.58345 * 186.60593 * 30 16 15 51 51 H 1.08996 * 109.70148 * 66.25067 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1820 1.2133 -0.3163 5 6 1.5172 2.3526 0.4067 6 7 0.3814 2.2889 1.0689 7 14 2.2777 4.0130 0.0143 8 1 2.4003 4.1658 -1.4577 9 1 1.4130 5.0933 0.5533 10 1 3.6240 4.0998 0.6349 11 6 2.1975 -1.2688 -0.0006 12 1 3.2693 -1.0707 0.0000 13 6 1.8281 -2.0713 -1.2502 14 6 2.6174 -3.3823 -1.2684 15 6 2.2495 -4.2124 -0.0345 16 7 2.4653 -3.3948 1.1670 17 6 3.2364 -3.8467 2.1757 18 8 3.4588 -3.1370 3.1337 19 6 3.8222 -5.2337 2.1132 20 1 4.3495 -5.3629 1.1681 21 6 2.6975 -6.2675 2.2152 22 6 3.2520 -7.6631 1.9011 23 6 4.4913 -7.8779 2.7293 24 7 5.1253 -9.0110 3.0129 25 7 6.1429 -8.7387 3.7580 26 7 6.2081 -7.4683 3.9787 27 6 7.2248 -6.7849 4.7822 28 6 5.1791 -6.8831 3.3424 29 6 4.8039 -5.4269 3.2765 30 6 1.8248 -2.0748 1.2477 31 1 -0.3633 0.0883 1.0239 32 1 -0.3633 0.8425 -0.5884 33 1 -0.3633 -0.9309 -0.4354 34 1 -0.0608 3.1042 1.3528 35 1 0.7604 -2.2904 -1.2387 36 1 2.0697 -1.4896 -2.1399 37 1 2.3714 -3.9426 -2.1704 38 1 3.6853 -3.1643 -1.2549 39 1 2.8800 -5.1005 0.0097 40 1 1.2024 -4.5101 -0.0908 41 1 2.2868 -6.2588 3.2248 42 1 1.9114 -6.0202 1.5017 43 1 2.5075 -8.4189 2.1512 44 1 3.5018 -7.7293 0.8422 45 1 8.0613 -6.5002 4.1440 46 1 6.7916 -5.8921 5.2333 47 1 7.5777 -7.4538 5.5671 48 1 5.6968 -4.8250 3.1075 49 1 4.3294 -5.1270 4.2109 50 1 2.1750 -1.5526 2.1379 51 1 0.7424 -2.1940 1.2960 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027545043.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:40 Heat of formation + Delta-G solvation = 62.302718 kcal Electronic energy + Delta-G solvation = -31682.599680 eV Core-core repulsion = 27618.747300 eV Total energy + Delta-G solvation = -4063.852380 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.43214 -41.48623 -39.12010 -37.60093 -36.75565 -35.87070 -33.96983 -32.77571 -31.69752 -31.53551 -30.19797 -28.73602 -28.04198 -26.80249 -25.56972 -24.81204 -24.05312 -22.98478 -22.38284 -21.40621 -20.43424 -19.76576 -18.79634 -18.44154 -17.96893 -17.60334 -17.03601 -16.75030 -16.23250 -15.72509 -15.62686 -15.35677 -15.10779 -14.88690 -14.83318 -14.72619 -14.60840 -14.35557 -14.13705 -13.81770 -13.79748 -13.68294 -13.48971 -13.12747 -13.01253 -12.87690 -12.77805 -12.58161 -12.46175 -12.23896 -12.18904 -12.05637 -12.05130 -11.90484 -11.69090 -11.59647 -11.50653 -11.35247 -10.93947 -10.68186 -10.61866 -9.86291 -9.63168 -8.77502 -7.83359 -5.28393 0.53304 1.42277 1.45354 1.47156 1.48884 1.53926 1.63836 2.00643 2.51343 3.11888 3.29439 3.34686 3.63743 3.70270 3.74249 3.78127 3.85972 4.01806 4.09303 4.12560 4.18038 4.23981 4.28221 4.33852 4.43569 4.44756 4.50989 4.55943 4.65265 4.67816 4.75200 4.84523 4.89747 4.90729 4.95423 4.99459 5.04493 5.10081 5.10287 5.21994 5.24033 5.29814 5.35967 5.47672 5.54573 5.60638 5.61136 5.64545 5.73853 6.31691 6.52273 7.14592 7.21273 7.45343 7.88312 8.29135 9.19364 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019225 B = 0.002434 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.087979 B =11501.443594 C =12309.992274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.610 5.610 3 C -0.263 4.263 4 H 0.067 0.933 5 C -0.054 4.054 6 N -0.937 5.937 7 Si 0.967 3.033 8 H -0.276 1.276 9 H -0.294 1.294 10 H -0.279 1.279 11 C 0.167 3.833 12 H 0.043 0.957 13 C -0.124 4.124 14 C -0.124 4.124 15 C 0.097 3.903 16 N -0.601 5.601 17 C 0.514 3.486 18 O -0.590 6.590 19 C -0.088 4.088 20 H 0.128 0.872 21 C -0.108 4.108 22 C -0.024 4.024 23 C -0.029 4.029 24 N -0.296 5.296 25 N -0.128 5.128 26 N -0.278 5.278 27 C 0.066 3.934 28 C -0.015 4.015 29 C -0.021 4.021 30 C 0.114 3.886 31 H -0.002 1.002 32 H 0.016 0.984 33 H 0.038 0.962 34 H 0.248 0.752 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.108 0.892 38 H 0.062 0.938 39 H 0.121 0.879 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.098 0.902 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.115 0.885 47 H 0.114 0.886 48 H 0.092 0.908 49 H 0.087 0.913 50 H 0.044 0.956 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.147 -21.883 -0.705 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.332 5.332 3 C -0.394 4.394 4 H 0.085 0.915 5 C -0.249 4.249 6 N -0.584 5.584 7 Si 0.795 3.205 8 H -0.202 1.202 9 H -0.220 1.220 10 H -0.205 1.205 11 C 0.059 3.941 12 H 0.061 0.939 13 C -0.163 4.163 14 C -0.163 4.163 15 C -0.023 4.023 16 N -0.333 5.333 17 C 0.304 3.696 18 O -0.471 6.471 19 C -0.110 4.110 20 H 0.146 0.854 21 C -0.146 4.146 22 C -0.063 4.063 23 C -0.170 4.170 24 N -0.160 5.160 25 N -0.106 5.106 26 N -0.071 5.071 27 C -0.073 4.073 28 C -0.150 4.150 29 C -0.061 4.061 30 C -0.011 4.011 31 H 0.016 0.984 32 H 0.035 0.965 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.126 0.874 38 H 0.080 0.920 39 H 0.139 0.861 40 H 0.108 0.892 41 H 0.083 0.917 42 H 0.125 0.875 43 H 0.116 0.884 44 H 0.128 0.872 45 H 0.129 0.871 46 H 0.133 0.867 47 H 0.133 0.867 48 H 0.111 0.889 49 H 0.105 0.895 50 H 0.062 0.938 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.878 -22.777 0.153 24.447 hybrid contribution -0.071 2.695 0.398 2.725 sum 8.807 -20.082 0.552 21.936 Atomic orbital electron populations 1.20495 0.82501 0.96224 0.97321 1.44192 1.02213 1.01090 1.85728 1.19494 0.96755 0.86243 1.36883 0.91523 1.25708 0.98637 1.01572 0.98979 1.70248 1.19969 1.27127 1.41028 0.85347 0.77456 0.79632 0.78054 1.20245 1.22046 1.20530 1.20785 0.94746 0.85133 0.93425 0.93861 1.21939 1.00673 0.96487 0.97236 1.21906 1.00106 0.95221 0.99020 1.22264 1.03814 0.93958 0.82308 1.48267 1.48315 1.17742 1.18992 1.21058 0.77817 0.89193 0.81576 1.90700 1.61348 1.59970 1.35080 1.21287 0.97704 0.90541 1.01471 0.85384 1.21723 0.96641 0.92078 1.04139 1.20059 0.90454 0.96798 0.98993 1.22267 1.01874 0.88141 1.04759 1.74740 1.03165 1.26058 1.12009 1.78504 1.17906 0.96108 1.18055 1.47184 1.20462 1.06033 1.33416 1.22714 0.89746 0.98767 0.96114 1.21948 0.92563 0.98594 1.01916 1.19867 0.99839 0.86471 0.99878 1.21942 0.96535 0.83031 0.99567 0.98351 0.96546 0.94368 0.94305 0.91733 0.92897 0.87390 0.91963 0.86074 0.89159 0.91676 0.87458 0.88387 0.87198 0.87091 0.86672 0.86710 0.88939 0.89499 0.93760 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.65 7.91 127.77 1.01 9.66 16 2 N -0.61 -30.01 2.82 -702.34 -1.98 -31.99 16 3 C -0.26 -14.59 9.62 84.03 0.81 -13.78 16 4 H 0.07 3.62 7.81 -2.91 -0.02 3.60 16 5 C -0.05 -3.05 5.06 84.86 0.43 -2.62 16 6 N -0.94 -55.97 10.65 21.65 0.23 -55.74 16 7 Si 0.97 45.60 29.58 68.60 2.03 47.63 16 8 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 9 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 C 0.17 6.45 2.74 45.07 0.12 6.57 16 12 H 0.04 1.82 7.85 -2.39 -0.02 1.80 16 13 C -0.12 -3.52 5.13 30.62 0.16 -3.36 16 14 C -0.12 -2.21 6.08 30.67 0.19 -2.02 16 15 C 0.10 1.49 4.91 86.36 0.42 1.91 16 16 N -0.60 -15.43 2.97 -818.90 -2.43 -17.86 16 17 C 0.51 13.54 6.98 87.65 0.61 14.15 16 18 O -0.59 -21.69 15.19 -3.03 -0.05 -21.74 16 19 C -0.09 -1.43 1.65 -11.36 -0.02 -1.45 16 20 H 0.13 1.47 7.09 -2.39 -0.02 1.45 16 21 C -0.11 -1.34 4.74 30.77 0.15 -1.20 16 22 C -0.02 -0.29 6.30 29.96 0.19 -0.10 16 23 C -0.03 -0.58 7.11 41.75 0.30 -0.28 16 24 N -0.30 -7.62 12.40 -48.99 -0.61 -8.23 16 25 N -0.13 -3.17 13.19 37.02 0.49 -2.68 16 26 N -0.28 -5.21 3.73 -356.42 -1.33 -6.54 16 27 C 0.07 0.59 11.27 127.77 1.44 2.03 16 28 C -0.01 -0.28 6.76 41.50 0.28 0.00 16 29 C -0.02 -0.36 4.76 29.94 0.14 -0.22 16 30 C 0.11 4.17 5.80 86.36 0.50 4.67 16 31 H 0.00 -0.10 7.42 -2.39 -0.02 -0.12 16 32 H 0.02 0.85 7.17 -2.39 -0.02 0.83 16 33 H 0.04 1.51 6.46 -2.39 -0.02 1.49 16 34 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 35 H 0.06 1.78 6.72 -2.39 -0.02 1.76 16 36 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.12 0.98 5.08 -2.39 -0.01 0.97 16 40 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.06 1.00 8.12 -2.39 -0.02 0.98 16 42 H 0.11 0.96 6.08 -2.38 -0.01 0.94 16 43 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.11 0.71 7.96 -2.38 -0.02 0.69 16 47 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.09 1.77 7.66 -2.38 -0.02 1.75 16 50 H 0.04 2.02 7.00 -2.39 -0.02 2.01 16 51 H 0.06 2.19 7.51 -2.39 -0.02 2.17 16 Total: -1.00 -80.69 390.18 4.01 -76.67 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 0.93 Total: 6.53 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 6.73 Total: 13.94 kcal Atomic # 7 Polarization: -117.40 SS G_CDS: -5.63 Total: -123.04 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.05 Total: -21.74 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -80.69 4.01 -76.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027545043.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.977 kcal (2) G-P(sol) polarization free energy of solvation -80.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds