Wall clock time and date at job start Wed Apr 1 2020 05:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36934 * 120.00345 * 2 1 4 4 H 1.08001 * 120.00114 * 214.05843 * 3 2 1 5 5 C 1.38813 * 119.99769 * 34.04701 * 3 2 1 6 6 N 1.31615 * 120.00014 * 5.43515 * 5 3 2 7 7 Si 1.86800 * 119.99784 * 185.42907 * 5 3 2 8 8 H 1.48502 * 109.47197 * 0.02562 * 7 5 3 9 9 H 1.48496 * 109.47050 * 120.00823 * 7 5 3 10 10 H 1.48498 * 109.47190 * 240.00365 * 7 5 3 11 11 C 1.46502 * 119.99588 * 180.02562 * 2 1 3 12 12 H 1.09003 * 109.52028 * 179.91548 * 11 2 1 13 13 C 1.53350 * 109.68935 * 59.74841 * 11 2 1 14 14 C 1.53041 * 109.60968 * 178.74694 * 13 11 2 15 15 C 1.53193 * 109.31151 * 61.37598 * 14 13 11 16 16 N 1.46936 * 108.77321 * 305.36350 * 15 14 13 17 17 C 1.34778 * 120.62839 * 233.58741 * 16 15 14 18 18 O 1.21279 * 119.99676 * 174.27538 * 17 16 15 19 19 C 1.50699 * 119.99907 * 354.27712 * 17 16 15 20 20 H 1.08993 * 109.46208 * 334.41791 * 19 17 16 21 21 C 1.53105 * 109.45636 * 94.36900 * 19 17 16 22 22 C 1.53424 * 109.58417 * 190.07629 * 21 19 17 23 23 C 1.50596 * 108.32999 * 310.16945 * 22 21 19 24 24 N 1.32911 * 129.16710 * 196.57395 * 23 22 21 25 25 N 1.29011 * 108.63869 * 179.87150 * 24 23 22 26 26 N 1.29108 * 110.26082 * 0.02590 * 25 24 23 27 27 C 1.46501 * 126.00912 * 180.09125 * 26 25 24 28 28 C 1.34396 * 107.98344 * 0.05389 * 26 25 24 29 29 C 1.50533 * 129.25310 * 179.86446 * 28 26 25 30 30 C 1.46923 * 118.73718 * 53.61223 * 16 15 14 31 31 H 1.09000 * 109.46727 * 265.04721 * 1 2 3 32 32 H 1.09002 * 109.46963 * 25.04101 * 1 2 3 33 33 H 1.08996 * 109.47395 * 145.04442 * 1 2 3 34 34 H 0.97002 * 120.00163 * 179.97438 * 6 5 3 35 35 H 1.09003 * 109.41718 * 58.70859 * 13 11 2 36 36 H 1.09001 * 109.41998 * 298.78930 * 13 11 2 37 37 H 1.08997 * 109.49698 * 301.42341 * 14 13 11 38 38 H 1.09000 * 109.52040 * 181.34161 * 14 13 11 39 39 H 1.08998 * 109.58774 * 185.57988 * 15 14 13 40 40 H 1.09001 * 109.59010 * 65.15115 * 15 14 13 41 41 H 1.09003 * 109.45058 * 310.10537 * 21 19 17 42 42 H 1.08997 * 109.46090 * 70.03696 * 21 19 17 43 43 H 1.08996 * 109.69622 * 190.46088 * 22 21 19 44 44 H 1.09001 * 109.72252 * 69.89542 * 22 21 19 45 45 H 1.08994 * 109.47553 * 269.96152 * 27 26 25 46 46 H 1.09003 * 109.46522 * 29.95987 * 27 26 25 47 47 H 1.08997 * 109.47069 * 149.95716 * 27 26 25 48 48 H 1.08996 * 109.69431 * 76.77456 * 29 28 26 49 49 H 1.09002 * 109.72785 * 316.20926 * 29 28 26 50 50 H 1.09000 * 109.58673 * 66.17703 * 30 16 15 51 51 H 1.08999 * 109.58159 * 186.46059 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.0908 1.2660 -0.5238 5 6 1.6342 2.2850 0.6731 6 7 0.5437 2.1598 1.3992 7 14 2.4883 3.9416 0.5483 8 1 3.6844 3.8174 -0.3232 9 1 1.5535 4.9378 -0.0337 10 1 2.9058 4.3865 1.9021 11 6 2.1975 -1.2688 -0.0006 12 1 3.2693 -1.0706 -0.0020 13 6 1.8258 -2.0794 -1.2482 14 6 2.6152 -3.3904 -1.2629 15 6 2.2500 -4.2156 -0.0250 16 7 2.4683 -3.3931 1.1729 17 6 3.2410 -3.8414 2.1821 18 8 3.4983 -3.1141 3.1179 19 6 3.7851 -5.2463 2.1478 20 1 3.1343 -5.8730 1.5382 21 6 5.1920 -5.2337 1.5439 22 6 5.6489 -6.6733 1.2744 23 6 5.4190 -7.4846 2.5221 24 7 5.9207 -8.6687 2.8578 25 7 5.4619 -8.9970 4.0180 26 7 4.6747 -8.0762 4.4644 27 6 3.9684 -8.0945 5.7478 28 6 4.6176 -7.0975 3.5451 29 6 3.8439 -5.8066 3.5750 30 6 1.8278 -2.0731 1.2498 31 1 -0.3633 -0.0887 1.0238 32 1 -0.3633 0.9311 -0.4350 33 1 -0.3634 -0.8422 -0.5888 34 1 0.1836 2.9278 1.8699 35 1 2.0653 -1.5012 -2.1406 36 1 0.7581 -2.2985 -1.2332 37 1 3.6830 -3.1722 -1.2526 38 1 2.3677 -3.9544 -2.1621 39 1 2.8806 -5.1034 0.0215 40 1 1.2023 -4.5115 -0.0791 41 1 5.1802 -4.6753 0.6078 42 1 5.8821 -4.7583 2.2410 43 1 6.7091 -6.6809 1.0215 44 1 5.0718 -7.0943 0.4510 45 1 2.9938 -8.5653 5.6196 46 1 4.5517 -8.6591 6.4753 47 1 3.8346 -7.0730 6.1035 48 1 4.3447 -5.0932 4.2294 49 1 2.8331 -5.9918 3.9387 50 1 0.7457 -2.1943 1.2996 51 1 2.1780 -1.5483 2.1386 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027545045.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:51 Heat of formation + Delta-G solvation = 80.761989 kcal Electronic energy + Delta-G solvation = -31702.436850 eV Core-core repulsion = 27639.384924 eV Total energy + Delta-G solvation = -4063.051926 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.64023 -40.31621 -37.82793 -36.58582 -35.15149 -35.08049 -32.39063 -31.33969 -30.88657 -30.66344 -28.80253 -28.12683 -26.00028 -25.68082 -24.41566 -23.67906 -22.96803 -21.71791 -21.64315 -20.36119 -19.30531 -18.46449 -17.55511 -17.26499 -16.84062 -16.71829 -15.58111 -15.34715 -14.89286 -14.81127 -14.24995 -14.16562 -14.12432 -14.03727 -13.86731 -13.63022 -13.52075 -13.41825 -13.17082 -12.72615 -12.62839 -12.46846 -12.25303 -12.22466 -11.85393 -11.71702 -11.41167 -11.31934 -11.09990 -11.01658 -10.84346 -10.78018 -10.65172 -10.41585 -10.37059 -10.19795 -10.17834 -9.97513 -9.73134 -9.51221 -9.05924 -8.56853 -8.34805 -6.62554 -5.79120 -3.33689 1.31286 2.04543 2.31568 2.72443 3.11550 3.36074 3.43498 3.45265 3.88678 4.13125 4.31557 4.42218 4.46479 4.54409 4.57493 4.59868 4.81783 4.86190 4.89454 5.00042 5.12465 5.15388 5.18189 5.29681 5.30047 5.40243 5.51863 5.56338 5.56926 5.61123 5.72090 5.75889 5.77000 5.89443 5.93958 5.98541 6.03450 6.12941 6.22639 6.30262 6.37502 6.49423 6.67718 6.76716 6.93119 6.99064 7.29652 7.63142 7.64379 7.79799 8.27934 8.33702 8.45355 9.21660 9.80769 10.35776 11.26767 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018701 B = 0.002448 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.865685 B =11435.084474 C =11901.637411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.588 5.588 3 C -0.261 4.261 4 H 0.064 0.936 5 C 0.012 3.988 6 N -0.900 5.900 7 Si 0.903 3.097 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.288 1.288 11 C 0.169 3.831 12 H 0.065 0.935 13 C -0.134 4.134 14 C -0.130 4.130 15 C 0.104 3.896 16 N -0.604 5.604 17 C 0.517 3.483 18 O -0.538 6.538 19 C -0.101 4.101 20 H 0.098 0.902 21 C -0.109 4.109 22 C -0.029 4.029 23 C -0.020 4.020 24 N -0.262 5.262 25 N -0.100 5.100 26 N -0.285 5.285 27 C 0.079 3.921 28 C -0.012 4.012 29 C -0.031 4.031 30 C 0.098 3.902 31 H 0.019 0.981 32 H 0.049 0.951 33 H -0.003 1.003 34 H 0.254 0.746 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.102 0.898 47 H 0.100 0.900 48 H 0.103 0.897 49 H 0.083 0.917 50 H 0.060 0.940 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.786 -20.549 1.583 20.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.310 5.310 3 C -0.391 4.391 4 H 0.082 0.918 5 C -0.188 4.188 6 N -0.544 5.544 7 Si 0.733 3.267 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.215 1.215 11 C 0.060 3.940 12 H 0.083 0.917 13 C -0.174 4.174 14 C -0.169 4.169 15 C -0.019 4.019 16 N -0.337 5.337 17 C 0.304 3.696 18 O -0.415 6.415 19 C -0.124 4.124 20 H 0.116 0.884 21 C -0.147 4.147 22 C -0.068 4.068 23 C -0.161 4.161 24 N -0.126 5.126 25 N -0.078 5.078 26 N -0.076 5.076 27 C -0.062 4.062 28 C -0.146 4.146 29 C -0.070 4.070 30 C -0.025 4.025 31 H 0.038 0.962 32 H 0.068 0.932 33 H 0.015 0.985 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.111 0.889 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.121 0.879 49 H 0.102 0.898 50 H 0.078 0.922 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.431 -21.402 2.523 22.002 hybrid contribution -0.385 1.836 0.091 1.878 sum 4.046 -19.566 2.614 20.151 Atomic orbital electron populations 1.20751 0.83135 0.97103 0.97541 1.43795 1.01511 1.00021 1.85653 1.19160 1.05562 0.87764 1.26650 0.91828 1.25320 0.97810 0.99307 0.96317 1.70003 1.22257 1.29566 1.32530 0.86212 0.79120 0.83949 0.77433 1.20159 1.21586 1.21501 1.20726 0.96545 0.86277 0.90497 0.91713 1.22124 0.99603 0.95008 1.00659 1.21893 1.01111 0.97259 0.96638 1.21810 1.01357 0.93676 0.85066 1.48306 1.48652 1.19153 1.17567 1.20280 0.78461 0.88486 0.82413 1.90716 1.58174 1.57837 1.34756 1.21354 0.99043 0.94836 0.97127 0.88395 1.21595 0.94361 0.96439 1.02332 1.19952 1.03016 0.91965 0.91914 1.21693 1.00434 0.94863 0.99066 1.74786 1.20202 1.12517 1.05136 1.78572 1.07802 1.13797 1.07614 1.46823 1.31559 1.13310 1.15956 1.22301 0.97568 1.05721 0.80655 1.21797 1.05346 0.95460 0.91992 1.20006 0.99358 0.90034 0.97619 1.22527 0.96529 0.80858 1.02589 0.96237 0.93213 0.98466 0.93631 0.91793 0.92322 0.91642 0.91215 0.90078 0.91541 0.89731 0.90286 0.89230 0.89633 0.88929 0.87905 0.88098 0.87926 0.89826 0.92152 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.75 8.00 59.85 0.48 4.22 16 2 N -0.59 -14.21 2.78 -173.16 -0.48 -14.70 16 3 C -0.26 -7.06 9.45 -15.06 -0.14 -7.20 16 4 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 5 C 0.01 0.34 5.17 -17.43 -0.09 0.25 16 6 N -0.90 -25.90 11.10 55.49 0.62 -25.28 16 7 Si 0.90 21.65 29.56 -169.99 -5.02 16.62 16 8 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 C 0.17 3.31 2.76 -67.65 -0.19 3.12 16 12 H 0.06 1.36 7.89 -51.93 -0.41 0.95 16 13 C -0.13 -2.08 5.12 -26.53 -0.14 -2.22 16 14 C -0.13 -1.47 6.08 -26.61 -0.16 -1.63 16 15 C 0.10 1.08 6.15 -3.70 -0.02 1.06 16 16 N -0.60 -8.60 2.97 -172.76 -0.51 -9.11 16 17 C 0.52 7.34 6.67 -10.99 -0.07 7.27 16 18 O -0.54 -9.96 15.49 5.56 0.09 -9.88 16 19 C -0.10 -1.00 1.69 -91.49 -0.15 -1.16 16 20 H 0.10 0.80 6.20 -51.93 -0.32 0.47 16 21 C -0.11 -0.98 5.05 -26.46 -0.13 -1.11 16 22 C -0.03 -0.25 6.30 -27.71 -0.17 -0.42 16 23 C -0.02 -0.23 7.11 -83.12 -0.59 -0.82 16 24 N -0.26 -3.57 12.40 33.16 0.41 -3.16 16 25 N -0.10 -1.28 13.19 60.35 0.80 -0.49 16 26 N -0.28 -2.85 3.73 -64.01 -0.24 -3.08 16 27 C 0.08 0.40 11.27 59.85 0.67 1.07 16 28 C -0.01 -0.12 6.76 -82.50 -0.56 -0.68 16 29 C -0.03 -0.29 5.06 -27.74 -0.14 -0.43 16 30 C 0.10 1.82 5.79 -3.71 -0.02 1.80 16 31 H 0.02 0.49 7.73 -51.93 -0.40 0.09 16 32 H 0.05 1.27 7.24 -51.93 -0.38 0.90 16 33 H 0.00 -0.06 6.48 -51.93 -0.34 -0.40 16 34 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.91 6.76 -51.93 -0.35 0.56 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.62 5.54 -51.93 -0.29 0.33 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.70 8.11 -51.93 -0.42 0.28 16 42 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.10 0.36 7.96 -51.93 -0.41 -0.05 16 48 H 0.10 1.10 7.52 -51.93 -0.39 0.71 16 49 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 50 H 0.06 1.13 7.51 -51.93 -0.39 0.74 16 51 H 0.09 2.05 7.00 -51.93 -0.36 1.69 16 LS Contribution 394.47 15.07 5.94 5.94 Total: -1.00 -34.47 394.47 -8.07 -42.54 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -8.24 Total: -2.53 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -1.43 Total: 3.12 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 0.59 Total: -55.82 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.47 -8.07 -42.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027545045.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.304 kcal (2) G-P(sol) polarization free energy of solvation -34.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds