Wall clock time and date at job start Wed Apr 1 2020 05:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47845 * 110.99998 * 2 1 4 4 C 1.54907 * 104.79818 * 213.63673 * 3 2 1 5 5 C 1.55144 * 101.65322 * 37.07168 * 4 3 2 6 6 C 1.47450 * 110.99790 * 239.16052 * 2 1 3 7 7 H 1.08997 * 109.88398 * 242.65780 * 6 2 1 8 8 C 1.50696 * 109.88799 * 3.85201 * 6 2 1 9 9 C 1.35369 * 126.37915 * 242.49066 * 8 6 2 10 10 C 1.41509 * 105.49946 * 179.86710 * 9 8 6 11 11 C 1.47710 * 126.51799 * 180.13189 * 10 9 8 12 12 O 1.21565 * 120.00019 * 0.29355 * 11 10 9 13 13 N 1.34777 * 119.99597 * 180.29864 * 11 10 9 14 14 C 1.46502 * 119.99554 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46905 * 185.61199 * 14 13 11 16 16 H 1.08999 * 109.87089 * 301.21534 * 15 14 13 17 17 C 1.54325 * 109.88005 * 180.20103 * 15 14 13 18 18 C 1.55151 * 102.94059 * 218.38786 * 17 15 14 19 19 C 1.54908 * 101.58359 * 35.50631 * 18 17 15 20 20 N 1.47022 * 109.88402 * 62.23664 * 15 14 13 21 21 C 1.36939 * 125.64705 * 298.31057 * 20 15 14 22 22 H 1.08000 * 120.00255 * 334.74667 * 21 20 15 23 23 C 1.38808 * 120.00094 * 154.73851 * 21 20 15 24 24 N 1.31621 * 119.99880 * 163.87980 * 23 21 20 25 25 Si 1.86804 * 120.00013 * 343.88002 * 23 21 20 26 26 H 1.48498 * 109.46918 * 85.06968 * 25 23 21 27 27 H 1.48499 * 109.47153 * 205.06676 * 25 23 21 28 28 H 1.48495 * 109.47161 * 325.07167 * 25 23 21 29 29 N 1.31808 * 106.95834 * 0.39941 * 10 9 8 30 30 N 1.28466 * 110.07922 * 359.75441 * 29 10 9 31 31 H 0.96993 * 124.88682 * 179.97438 * 30 29 10 32 32 H 1.08995 * 109.47028 * 175.60984 * 1 2 3 33 33 H 1.08997 * 109.47142 * 295.60848 * 1 2 3 34 34 H 1.08998 * 109.47318 * 55.61141 * 1 2 3 35 35 H 1.09003 * 110.37714 * 332.46802 * 3 2 1 36 36 H 1.09003 * 110.37439 * 94.80938 * 3 2 1 37 37 H 1.08998 * 110.99459 * 278.98154 * 4 3 2 38 38 H 1.09001 * 111.02511 * 155.17391 * 4 3 2 39 39 H 1.08995 * 110.71010 * 205.96450 * 5 4 3 40 40 H 1.09004 * 110.85756 * 82.79563 * 5 4 3 41 41 H 1.08001 * 127.25248 * 359.96838 * 9 8 6 42 42 H 0.96995 * 120.00104 * 359.97438 * 13 11 10 43 43 H 1.09002 * 109.46794 * 305.60981 * 14 13 11 44 44 H 1.08998 * 109.47318 * 65.60978 * 14 13 11 45 45 H 1.08994 * 110.72066 * 336.75275 * 17 15 14 46 46 H 1.08999 * 110.71600 * 99.84783 * 17 15 14 47 47 H 1.09000 * 111.00472 * 153.57944 * 18 17 15 48 48 H 1.09004 * 111.00464 * 277.42888 * 18 17 15 49 49 H 1.08997 * 110.37001 * 81.82793 * 19 18 17 50 50 H 1.09005 * 110.36882 * 204.04198 * 19 18 17 51 51 H 0.97004 * 119.99553 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3028 -0.8296 5 6 2.9158 0.2822 -1.9316 6 6 1.9973 -0.7057 -1.1819 7 1 2.5697 -1.5784 -0.8675 8 6 0.8610 -1.1290 -2.0767 9 6 0.5241 -2.3996 -2.4000 10 6 -0.5990 -2.2876 -3.2535 11 6 -1.3436 -3.4004 -3.8771 12 8 -1.0065 -4.5496 -3.6684 13 7 -2.3966 -3.1417 -4.6775 14 6 -3.1355 -4.2455 -5.2956 15 6 -4.1838 -3.6821 -6.2572 16 1 -4.8669 -3.0261 -5.7177 17 6 -4.9715 -4.8374 -6.9102 18 6 -5.1683 -4.3435 -8.3678 19 6 -3.8389 -3.5904 -8.6232 20 7 -3.5219 -2.9358 -7.3372 21 6 -2.7428 -1.8212 -7.1759 22 1 -2.8819 -1.1851 -6.3142 23 6 -1.7740 -1.5091 -8.1197 24 7 -1.2485 -0.3027 -8.1491 25 14 -1.2161 -2.8011 -9.3481 26 1 -2.1402 -2.8106 -10.5104 27 1 0.1585 -2.4830 -9.8111 28 1 -1.2232 -4.1368 -8.6991 29 7 -0.8507 -1.0010 -3.3908 30 7 -0.0071 -0.3115 -2.7101 31 1 0.0047 0.6570 -2.6588 32 1 -0.3633 -1.0246 -0.0787 33 1 -0.3633 0.4442 0.9267 34 1 -0.3634 0.5804 -0.8480 35 1 1.2889 2.0593 -0.4723 36 1 2.2148 1.7038 1.0182 37 1 4.1302 0.9282 -0.2244 38 1 3.5501 2.2719 -1.2641 39 1 3.7999 -0.2278 -2.3138 40 1 2.3752 0.7725 -2.7412 41 1 1.0092 -3.3078 -2.0737 42 1 -2.6657 -2.2247 -4.8437 43 1 -2.4433 -4.8830 -5.8456 44 1 -3.6305 -4.8304 -4.5204 45 1 -4.3909 -5.7596 -6.8906 46 1 -5.9322 -4.9776 -6.4146 47 1 -5.2793 -5.1836 -9.0534 48 1 -6.0204 -3.6675 -8.4396 49 1 -3.0516 -4.2927 -8.8970 50 1 -3.9701 -2.8442 -9.4068 51 1 -0.5717 -0.0845 -8.8089 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027897553.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:51 Heat of formation + Delta-G solvation = 84.362762 kcal Electronic energy + Delta-G solvation = -31679.477196 eV Core-core repulsion = 27616.581411 eV Total energy + Delta-G solvation = -4062.895785 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.76147 -39.31212 -38.82354 -37.71124 -33.87079 -32.62271 -32.50717 -31.80406 -31.69147 -29.96165 -29.34531 -27.90387 -25.96685 -25.28073 -24.15132 -22.81693 -21.90011 -21.54735 -20.98979 -20.74220 -19.72985 -19.02131 -17.49181 -17.11286 -16.48922 -16.35291 -15.75589 -15.58428 -15.35732 -15.07375 -15.05921 -14.34254 -14.20104 -13.89586 -13.55551 -13.40721 -13.33305 -13.23495 -12.97431 -12.88796 -12.56001 -12.53367 -11.87595 -11.77622 -11.66049 -11.57493 -11.42147 -11.27733 -11.13286 -11.12475 -10.93196 -10.71618 -10.55323 -10.50279 -10.02658 -9.89924 -9.57105 -9.39495 -9.17250 -9.07394 -8.72771 -8.54855 -8.24729 -7.00862 -5.95966 -3.32747 1.89231 2.22913 2.93405 3.34146 3.48255 3.51375 3.71208 3.77422 3.99740 4.23378 4.32443 4.41524 4.53588 4.75054 4.79686 4.93470 5.03685 5.05868 5.17474 5.19613 5.21209 5.29288 5.31868 5.42668 5.50754 5.54362 5.56882 5.63386 5.69987 5.75520 5.75869 5.83209 5.88428 5.95631 6.03303 6.12237 6.14225 6.27549 6.33590 6.40566 6.54487 6.58288 6.64328 6.64996 6.78321 6.87187 7.06224 7.16980 7.72314 7.99257 8.26665 8.37014 8.76598 8.88621 9.66463 10.17622 11.19514 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015296 B = 0.002986 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.152362 B = 9373.806407 C =10352.141864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.523 5.523 3 C 0.035 3.965 4 C -0.129 4.129 5 C -0.140 4.140 6 C 0.143 3.857 7 H 0.114 0.886 8 C -0.009 4.009 9 C -0.165 4.165 10 C -0.004 4.004 11 C 0.597 3.403 12 O -0.556 6.556 13 N -0.686 5.686 14 C 0.114 3.886 15 C 0.145 3.855 16 H 0.049 0.951 17 C -0.123 4.123 18 C -0.130 4.130 19 C 0.106 3.894 20 N -0.603 5.603 21 C -0.238 4.238 22 H 0.091 0.909 23 C 0.030 3.970 24 N -0.908 5.908 25 Si 0.888 3.112 26 H -0.287 1.287 27 H -0.305 1.305 28 H -0.273 1.273 29 N -0.232 5.232 30 N -0.379 5.379 31 H 0.439 0.561 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.026 0.974 35 H 0.046 0.954 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.160 0.840 42 H 0.416 0.584 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.068 0.932 49 H 0.027 0.973 50 H 0.057 0.943 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.108 1.416 14.356 14.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.246 5.246 3 C -0.093 4.093 4 C -0.167 4.167 5 C -0.179 4.179 6 C 0.034 3.966 7 H 0.131 0.869 8 C -0.134 4.134 9 C -0.194 4.194 10 C -0.165 4.165 11 C 0.381 3.619 12 O -0.434 6.434 13 N -0.338 5.338 14 C -0.012 4.012 15 C 0.038 3.962 16 H 0.067 0.933 17 C -0.161 4.161 18 C -0.169 4.169 19 C -0.018 4.018 20 N -0.329 5.329 21 C -0.365 4.365 22 H 0.108 0.892 23 C -0.169 4.169 24 N -0.551 5.551 25 Si 0.719 3.281 26 H -0.214 1.214 27 H -0.234 1.234 28 H -0.199 1.199 29 N -0.068 5.068 30 N -0.095 5.095 31 H 0.284 0.716 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.044 0.956 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.178 0.822 42 H 0.256 0.744 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.045 0.955 50 H 0.075 0.925 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.902 1.248 14.339 14.683 hybrid contribution 0.687 0.201 -1.331 1.511 sum 3.589 1.449 13.008 13.572 Atomic orbital electron populations 1.22725 0.87179 1.02713 1.00586 1.63880 1.08490 1.14247 1.38009 1.23184 0.95754 0.89352 1.00990 1.22724 0.97732 0.99498 0.96753 1.22917 1.00207 0.96856 0.97933 1.21155 0.90716 0.98445 0.86308 0.86853 1.21504 0.98109 0.91144 1.02676 1.21477 0.98816 0.96730 1.02385 1.22025 0.99973 0.90810 1.03687 1.16874 0.79961 0.86292 0.78766 1.90719 1.68341 1.20683 1.63656 1.45930 1.30011 1.11984 1.45857 1.21967 0.94754 0.89211 0.95274 1.21326 0.92636 0.92224 0.90047 0.93318 1.22511 0.99533 0.97836 0.96246 1.22704 0.98710 0.99445 0.95993 1.22075 0.93754 0.95536 0.90478 1.44934 1.58168 1.30183 0.99583 1.18442 1.10517 0.97345 1.10172 0.89182 1.25090 0.96849 0.96354 0.98617 1.69774 1.30304 1.18272 1.36755 0.86916 0.76976 0.82866 0.81363 1.21367 1.23359 1.19898 1.73765 1.14857 1.04845 1.13285 1.43545 1.21958 1.09660 1.34294 0.71563 0.90486 0.91206 0.95595 0.93540 0.89722 0.90169 0.90433 0.89631 0.91277 0.82222 0.74413 0.91770 0.92769 0.91345 0.91288 0.91737 0.91280 0.95511 0.92477 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 8.29 60.06 0.50 0.66 16 2 N -0.52 -4.92 5.44 -232.95 -1.27 -6.18 16 3 C 0.03 0.26 6.73 -2.30 -0.02 0.25 16 4 C -0.13 -0.89 7.08 -24.59 -0.17 -1.06 16 5 C -0.14 -1.21 6.46 -24.90 -0.16 -1.37 16 6 C 0.14 1.42 3.90 -67.87 -0.26 1.16 16 7 H 0.11 1.08 8.13 -51.93 -0.42 0.66 16 8 C -0.01 -0.11 3.71 -82.21 -0.31 -0.42 16 9 C -0.17 -2.59 10.72 -39.36 -0.42 -3.01 16 10 C 0.00 -0.07 7.13 -82.76 -0.59 -0.66 16 11 C 0.60 12.61 7.82 -12.39 -0.10 12.52 16 12 O -0.56 -12.72 16.92 5.31 0.09 -12.63 16 13 N -0.69 -14.22 4.81 -61.29 -0.30 -14.52 16 14 C 0.11 2.20 5.17 -4.04 -0.02 2.18 16 15 C 0.15 2.73 3.33 -66.95 -0.22 2.51 16 16 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 17 C -0.12 -1.88 6.48 -24.90 -0.16 -2.04 16 18 C -0.13 -2.10 7.08 -24.59 -0.17 -2.27 16 19 C 0.11 2.26 4.75 -2.35 -0.01 2.24 16 20 N -0.60 -13.87 2.88 -162.32 -0.47 -14.34 16 21 C -0.24 -6.35 8.88 -15.06 -0.13 -6.48 16 22 H 0.09 2.53 6.62 -52.49 -0.35 2.18 16 23 C 0.03 0.86 5.47 -17.43 -0.10 0.77 16 24 N -0.91 -27.35 13.97 55.49 0.78 -26.58 16 25 Si 0.89 23.05 24.31 -169.99 -4.13 18.92 16 26 H -0.29 -7.16 6.72 56.52 0.38 -6.78 16 27 H -0.31 -8.15 7.11 56.52 0.40 -7.75 16 28 H -0.27 -7.13 6.42 56.52 0.36 -6.76 16 29 N -0.23 -4.15 11.92 33.42 0.40 -3.75 16 30 N -0.38 -5.22 5.10 33.50 0.17 -5.05 16 31 H 0.44 4.93 7.86 -190.45 -1.50 3.43 16 32 H 0.08 0.89 7.23 -51.93 -0.38 0.51 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.03 0.25 5.33 -51.93 -0.28 -0.02 16 35 H 0.05 0.34 7.71 -51.93 -0.40 -0.06 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.66 7.56 -51.93 -0.39 0.27 16 41 H 0.16 2.31 8.06 -52.49 -0.42 1.89 16 42 H 0.42 8.94 5.71 -40.82 -0.23 8.70 16 43 H 0.06 1.38 8.13 -51.93 -0.42 0.96 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.07 1.01 7.85 -51.93 -0.41 0.60 16 46 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 48 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.03 0.61 5.22 -51.93 -0.27 0.34 16 50 H 0.06 1.29 7.02 -51.93 -0.36 0.92 16 51 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 390.76 15.07 5.89 5.89 Total: -1.00 -33.18 390.76 -10.45 -43.62 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -9.26 Total: 9.65 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -2.35 Total: 4.97 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -0.69 Total: -70.42 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.09 Total: -12.63 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.13 Total: 18.92 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.18 -10.45 -43.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027897553.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.988 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds