Wall clock time and date at job start Wed Apr 1 2020 05:30:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46897 * 1
3 3 C 1.47845 * 110.99998 * 2 1
4 4 C 1.54907 * 104.79818 * 213.63673 * 3 2 1
5 5 C 1.55144 * 101.65322 * 37.07168 * 4 3 2
6 6 C 1.47450 * 110.99790 * 239.16052 * 2 1 3
7 7 H 1.08997 * 109.88398 * 242.65780 * 6 2 1
8 8 C 1.50696 * 109.88799 * 3.85201 * 6 2 1
9 9 C 1.35369 * 126.37915 * 242.49066 * 8 6 2
10 10 C 1.41509 * 105.49946 * 179.86710 * 9 8 6
11 11 C 1.47710 * 126.51799 * 180.13189 * 10 9 8
12 12 O 1.21565 * 120.00019 * 0.29355 * 11 10 9
13 13 N 1.34777 * 119.99597 * 180.29864 * 11 10 9
14 14 C 1.46502 * 119.99554 * 180.02562 * 13 11 10
15 15 C 1.53005 * 109.46905 * 185.61199 * 14 13 11
16 16 H 1.08999 * 109.87089 * 301.21534 * 15 14 13
17 17 C 1.54325 * 109.88005 * 180.20103 * 15 14 13
18 18 C 1.55151 * 102.94059 * 218.38786 * 17 15 14
19 19 C 1.54908 * 101.58359 * 35.50631 * 18 17 15
20 20 N 1.47022 * 109.88402 * 62.23664 * 15 14 13
21 21 C 1.36939 * 125.64705 * 298.31057 * 20 15 14
22 22 H 1.08000 * 120.00255 * 334.74667 * 21 20 15
23 23 C 1.38808 * 120.00094 * 154.73851 * 21 20 15
24 24 N 1.31621 * 119.99880 * 163.87980 * 23 21 20
25 25 Si 1.86804 * 120.00013 * 343.88002 * 23 21 20
26 26 H 1.48498 * 109.46918 * 85.06968 * 25 23 21
27 27 H 1.48499 * 109.47153 * 205.06676 * 25 23 21
28 28 H 1.48495 * 109.47161 * 325.07167 * 25 23 21
29 29 N 1.31808 * 106.95834 * 0.39941 * 10 9 8
30 30 N 1.28466 * 110.07922 * 359.75441 * 29 10 9
31 31 H 0.96993 * 124.88682 * 179.97438 * 30 29 10
32 32 H 1.08995 * 109.47028 * 175.60984 * 1 2 3
33 33 H 1.08997 * 109.47142 * 295.60848 * 1 2 3
34 34 H 1.08998 * 109.47318 * 55.61141 * 1 2 3
35 35 H 1.09003 * 110.37714 * 332.46802 * 3 2 1
36 36 H 1.09003 * 110.37439 * 94.80938 * 3 2 1
37 37 H 1.08998 * 110.99459 * 278.98154 * 4 3 2
38 38 H 1.09001 * 111.02511 * 155.17391 * 4 3 2
39 39 H 1.08995 * 110.71010 * 205.96450 * 5 4 3
40 40 H 1.09004 * 110.85756 * 82.79563 * 5 4 3
41 41 H 1.08001 * 127.25248 * 359.96838 * 9 8 6
42 42 H 0.96995 * 120.00104 * 359.97438 * 13 11 10
43 43 H 1.09002 * 109.46794 * 305.60981 * 14 13 11
44 44 H 1.08998 * 109.47318 * 65.60978 * 14 13 11
45 45 H 1.08994 * 110.72066 * 336.75275 * 17 15 14
46 46 H 1.08999 * 110.71600 * 99.84783 * 17 15 14
47 47 H 1.09000 * 111.00472 * 153.57944 * 18 17 15
48 48 H 1.09004 * 111.00464 * 277.42888 * 18 17 15
49 49 H 1.08997 * 110.37001 * 81.82793 * 19 18 17
50 50 H 1.09005 * 110.36882 * 204.04198 * 19 18 17
51 51 H 0.97004 * 119.99553 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9988 1.3802 0.0000
4 6 3.3047 1.3028 -0.8296
5 6 2.9158 0.2822 -1.9316
6 6 1.9973 -0.7057 -1.1819
7 1 2.5697 -1.5784 -0.8675
8 6 0.8610 -1.1290 -2.0767
9 6 0.5241 -2.3996 -2.4000
10 6 -0.5990 -2.2876 -3.2535
11 6 -1.3436 -3.4004 -3.8771
12 8 -1.0065 -4.5496 -3.6684
13 7 -2.3966 -3.1417 -4.6775
14 6 -3.1355 -4.2455 -5.2956
15 6 -4.1838 -3.6821 -6.2572
16 1 -4.8669 -3.0261 -5.7177
17 6 -4.9715 -4.8374 -6.9102
18 6 -5.1683 -4.3435 -8.3678
19 6 -3.8389 -3.5904 -8.6232
20 7 -3.5219 -2.9358 -7.3372
21 6 -2.7428 -1.8212 -7.1759
22 1 -2.8819 -1.1851 -6.3142
23 6 -1.7740 -1.5091 -8.1197
24 7 -1.2485 -0.3027 -8.1491
25 14 -1.2161 -2.8011 -9.3481
26 1 -2.1402 -2.8106 -10.5104
27 1 0.1585 -2.4830 -9.8111
28 1 -1.2232 -4.1368 -8.6991
29 7 -0.8507 -1.0010 -3.3908
30 7 -0.0071 -0.3115 -2.7101
31 1 0.0047 0.6570 -2.6588
32 1 -0.3633 -1.0246 -0.0787
33 1 -0.3633 0.4442 0.9267
34 1 -0.3634 0.5804 -0.8480
35 1 1.2889 2.0593 -0.4723
36 1 2.2148 1.7038 1.0182
37 1 4.1302 0.9282 -0.2244
38 1 3.5501 2.2719 -1.2641
39 1 3.7999 -0.2278 -2.3138
40 1 2.3752 0.7725 -2.7412
41 1 1.0092 -3.3078 -2.0737
42 1 -2.6657 -2.2247 -4.8437
43 1 -2.4433 -4.8830 -5.8456
44 1 -3.6305 -4.8304 -4.5204
45 1 -4.3909 -5.7596 -6.8906
46 1 -5.9322 -4.9776 -6.4146
47 1 -5.2793 -5.1836 -9.0534
48 1 -6.0204 -3.6675 -8.4396
49 1 -3.0516 -4.2927 -8.8970
50 1 -3.9701 -2.8442 -9.4068
51 1 -0.5717 -0.0845 -8.8089
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001027897553.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:30:50
Heat of formation + Delta-G solvation = 58.849360 kcal
Electronic energy + Delta-G solvation = -31680.583540 eV
Core-core repulsion = 27616.581411 eV
Total energy + Delta-G solvation = -4064.002129 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.09 seconds
Orbital eigenvalues (eV)
-43.98785 -40.65531 -39.91512 -39.31513 -35.51087 -34.62370 -33.32157 -32.92481
-32.82491 -31.78689 -30.84824 -28.84427 -26.96871 -26.62838 -25.96047 -24.33342
-22.99082 -22.45904 -22.16620 -21.81151 -21.38277 -20.53574 -18.96723 -18.56090
-17.86466 -17.39340 -17.23840 -16.98821 -16.87217 -16.56852 -16.24387 -15.72727
-15.23089 -15.13697 -15.02368 -14.88070 -14.67941 -14.54960 -14.31809 -14.18132
-14.04126 -13.60188 -13.40752 -13.02225 -12.79487 -12.71401 -12.71233 -12.52128
-12.30377 -12.29523 -12.08482 -12.06315 -11.94621 -11.78605 -11.65541 -11.61176
-11.28760 -11.14989 -10.82083 -10.48431 -10.20534 -9.89529 -9.40550 -8.96542
-8.15259 -5.45480 0.51724 0.98342 1.24026 1.34507 1.40390 1.77660
2.26624 2.39547 2.45846 2.97178 3.14119 3.27104 3.31078 3.44961
3.58907 3.71490 3.86081 3.99555 4.07557 4.11582 4.20282 4.29205
4.30750 4.35642 4.40035 4.45630 4.47468 4.55871 4.61120 4.66240
4.74436 4.81548 4.87621 4.90500 4.95331 5.01947 5.02973 5.03494
5.11803 5.15679 5.25213 5.26621 5.28130 5.48514 5.53967 5.74689
5.80804 5.88669 5.99763 6.13166 6.52472 6.78033 6.84994 7.21721
7.56270 8.15447 9.03922
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.015296 B = 0.002986 C = 0.002704
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1830.152362 B = 9373.806407 C =10352.141864
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 N -0.524 5.524
3 C 0.031 3.969
4 C -0.120 4.120
5 C -0.141 4.141
6 C 0.144 3.856
7 H 0.122 0.878
8 C 0.022 3.978
9 C -0.183 4.183
10 C -0.033 4.033
11 C 0.591 3.409
12 O -0.581 6.581
13 N -0.691 5.691
14 C 0.115 3.885
15 C 0.140 3.860
16 H 0.057 0.943
17 C -0.112 4.112
18 C -0.116 4.116
19 C 0.094 3.906
20 N -0.620 5.620
21 C -0.207 4.207
22 H 0.070 0.930
23 C -0.027 4.027
24 N -0.951 5.951
25 Si 0.936 3.064
26 H -0.272 1.272
27 H -0.319 1.319
28 H -0.278 1.278
29 N -0.261 5.261
30 N -0.364 5.364
31 H 0.451 0.549
32 H 0.056 0.944
33 H 0.084 0.916
34 H 0.023 0.977
35 H 0.050 0.950
36 H 0.097 0.903
37 H 0.090 0.910
38 H 0.090 0.910
39 H 0.092 0.908
40 H 0.058 0.942
41 H 0.168 0.832
42 H 0.411 0.589
43 H 0.040 0.960
44 H 0.081 0.919
45 H 0.076 0.924
46 H 0.108 0.892
47 H 0.095 0.905
48 H 0.080 0.920
49 H 0.015 0.985
50 H 0.039 0.961
51 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.472 0.865 15.474 15.694
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 N -0.248 5.248
3 C -0.096 4.096
4 C -0.158 4.158
5 C -0.180 4.180
6 C 0.034 3.966
7 H 0.140 0.860
8 C -0.105 4.105
9 C -0.212 4.212
10 C -0.193 4.193
11 C 0.376 3.624
12 O -0.461 6.461
13 N -0.341 5.341
14 C -0.011 4.011
15 C 0.034 3.966
16 H 0.075 0.925
17 C -0.151 4.151
18 C -0.154 4.154
19 C -0.030 4.030
20 N -0.346 5.346
21 C -0.336 4.336
22 H 0.088 0.912
23 C -0.221 4.221
24 N -0.599 5.599
25 Si 0.767 3.233
26 H -0.198 1.198
27 H -0.249 1.249
28 H -0.204 1.204
29 N -0.097 5.097
30 N -0.081 5.081
31 H 0.298 0.702
32 H 0.075 0.925
33 H 0.102 0.898
34 H 0.042 0.958
35 H 0.068 0.932
36 H 0.116 0.884
37 H 0.108 0.892
38 H 0.109 0.891
39 H 0.111 0.889
40 H 0.076 0.924
41 H 0.185 0.815
42 H 0.250 0.750
43 H 0.058 0.942
44 H 0.099 0.901
45 H 0.095 0.905
46 H 0.126 0.874
47 H 0.113 0.887
48 H 0.099 0.901
49 H 0.033 0.967
50 H 0.057 0.943
51 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 2.216 0.668 15.455 15.627
hybrid contribution 0.844 0.423 -1.539 1.805
sum 3.060 1.091 13.916 14.290
Atomic orbital electron populations
1.22688 0.87606 1.01480 1.01290 1.63946 1.08077 1.15615 1.37153
1.23303 0.96080 0.88171 1.02016 1.22713 0.97597 0.99540 0.95904
1.22932 0.99957 0.97000 0.98120 1.21344 0.89669 0.99418 0.86149
0.85985 1.21905 0.97552 0.89975 1.01089 1.21659 0.98555 0.98265
1.02738 1.21905 1.01359 0.90703 1.05296 1.17233 0.79906 0.86691
0.78560 1.90677 1.69034 1.21730 1.64670 1.46032 1.30239 1.11996
1.45857 1.22019 0.94333 0.88791 0.95915 1.21580 0.92384 0.93499
0.89120 0.92487 1.22554 1.00811 0.96243 0.95443 1.22670 0.95671
0.99976 0.97071 1.22191 0.96504 0.95199 0.89096 1.45119 1.57600
1.29872 1.02018 1.18406 1.09360 0.97591 1.08196 0.91245 1.25572
0.98132 0.97565 1.00882 1.69883 1.31891 1.19805 1.38282 0.86126
0.76024 0.80730 0.80377 1.19819 1.24872 1.20381 1.73680 1.16486
1.04870 1.14710 1.43583 1.21162 1.10235 1.33114 0.70172 0.92496
0.89768 0.95831 0.93160 0.88435 0.89179 0.89135 0.88928 0.92358
0.81465 0.75035 0.94177 0.90143 0.90528 0.87407 0.88663 0.90098
0.96710 0.94305 0.93484
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.33 8.29 127.69 1.06 1.39 16
2 N -0.52 -8.90 5.44 -890.92 -4.85 -13.75 16
3 C 0.03 0.39 6.73 86.77 0.58 0.98 16
4 C -0.12 -1.32 7.08 31.98 0.23 -1.09 16
5 C -0.14 -2.19 6.46 31.78 0.21 -1.98 16
6 C 0.14 2.65 3.90 44.51 0.17 2.83 16
7 H 0.12 2.11 8.13 -2.39 -0.02 2.10 16
8 C 0.02 0.55 3.71 41.40 0.15 0.71 16
9 C -0.18 -5.88 10.72 22.41 0.24 -5.64 16
10 C -0.03 -1.28 7.13 42.46 0.30 -0.98 16
11 C 0.59 25.83 7.82 86.75 0.68 26.50 16
12 O -0.58 -27.32 16.92 -3.92 -0.07 -27.39 16
13 N -0.69 -29.33 4.81 -466.09 -2.24 -31.57 16
14 C 0.11 4.38 5.17 86.38 0.45 4.83 16
15 C 0.14 5.06 3.33 45.34 0.15 5.21 16
16 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16
17 C -0.11 -3.00 6.48 31.78 0.21 -2.80 16
18 C -0.12 -3.30 7.08 31.98 0.23 -3.07 16
19 C 0.09 3.88 4.75 86.79 0.41 4.29 16
20 N -0.62 -28.28 2.88 -667.45 -1.92 -30.20 16
21 C -0.21 -11.28 8.88 84.03 0.75 -10.53 16
22 H 0.07 4.05 6.62 -2.91 -0.02 4.03 16
23 C -0.03 -1.57 5.47 84.86 0.46 -1.10 16
24 N -0.95 -59.42 13.97 21.65 0.30 -59.12 16
25 Si 0.94 48.83 24.31 68.60 1.67 50.50 16
26 H -0.27 -13.33 6.72 99.48 0.67 -12.66 16
27 H -0.32 -17.21 7.11 99.48 0.71 -16.50 16
28 H -0.28 -14.46 6.42 99.48 0.64 -13.82 16
29 N -0.26 -9.67 11.92 -48.17 -0.57 -10.24 16
30 N -0.36 -10.13 5.10 -47.93 -0.24 -10.37 16
31 H 0.45 10.04 7.86 -220.00 -1.73 8.31 16
32 H 0.06 1.30 7.23 -2.39 -0.02 1.28 16
33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16
34 H 0.02 0.44 5.33 -2.39 -0.01 0.43 16
35 H 0.05 0.61 7.71 -2.39 -0.02 0.59 16
36 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16
37 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16
38 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16
39 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16
40 H 0.06 1.04 7.56 -2.39 -0.02 1.02 16
41 H 0.17 4.95 8.06 -2.91 -0.02 4.92 16
42 H 0.41 18.29 5.71 -92.71 -0.53 17.76 16
43 H 0.04 1.72 8.13 -2.39 -0.02 1.70 16
44 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16
45 H 0.08 1.96 7.85 -2.39 -0.02 1.95 16
46 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16
47 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16
48 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16
49 H 0.02 0.66 5.22 -2.39 -0.01 0.65 16
50 H 0.04 1.72 7.02 -2.38 -0.02 1.70 16
51 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16
Total: -1.00 -75.06 390.76 -3.06 -78.12
By element:
Atomic # 1 Polarization: 35.89 SS G_CDS: -1.40 Total: 34.49 kcal
Atomic # 6 Polarization: 13.27 SS G_CDS: 6.28 Total: 19.54 kcal
Atomic # 7 Polarization: -145.72 SS G_CDS: -9.53 Total: -155.26 kcal
Atomic # 8 Polarization: -27.32 SS G_CDS: -0.07 Total: -27.39 kcal
Atomic # 14 Polarization: 48.83 SS G_CDS: 1.67 Total: 50.50 kcal
Total: -75.06 -3.06 -78.12 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001027897553.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 136.965 kcal
(2) G-P(sol) polarization free energy of solvation -75.055 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.910 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.061 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.116 kcal
(6) G-S(sol) free energy of system = (1) + (5) 58.849 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.09 seconds