Wall clock time and date at job start Wed Apr 1 2020 05:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47845 * 110.99998 * 2 1 4 4 C 1.54907 * 104.79818 * 213.63673 * 3 2 1 5 5 C 1.55144 * 101.65322 * 37.07168 * 4 3 2 6 6 C 1.47450 * 110.99790 * 239.16052 * 2 1 3 7 7 H 1.08997 * 109.88398 * 242.65780 * 6 2 1 8 8 C 1.50696 * 109.88799 * 3.85201 * 6 2 1 9 9 C 1.35369 * 126.37915 * 242.49066 * 8 6 2 10 10 C 1.41509 * 105.49946 * 179.86710 * 9 8 6 11 11 C 1.47710 * 126.51799 * 180.13189 * 10 9 8 12 12 O 1.21565 * 120.00019 * 0.29355 * 11 10 9 13 13 N 1.34777 * 119.99597 * 180.29864 * 11 10 9 14 14 C 1.46502 * 119.99554 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46905 * 185.61199 * 14 13 11 16 16 H 1.08999 * 109.87089 * 301.21534 * 15 14 13 17 17 C 1.54325 * 109.88005 * 180.20103 * 15 14 13 18 18 C 1.55151 * 102.94059 * 218.38786 * 17 15 14 19 19 C 1.54908 * 101.58359 * 35.50631 * 18 17 15 20 20 N 1.47022 * 109.88402 * 62.23664 * 15 14 13 21 21 C 1.36939 * 125.64705 * 298.31057 * 20 15 14 22 22 H 1.08000 * 120.00255 * 334.74667 * 21 20 15 23 23 C 1.38808 * 120.00094 * 154.73851 * 21 20 15 24 24 N 1.31621 * 119.99880 * 163.87980 * 23 21 20 25 25 Si 1.86804 * 120.00013 * 343.88002 * 23 21 20 26 26 H 1.48498 * 109.46918 * 85.06968 * 25 23 21 27 27 H 1.48499 * 109.47153 * 205.06676 * 25 23 21 28 28 H 1.48495 * 109.47161 * 325.07167 * 25 23 21 29 29 N 1.31808 * 106.95834 * 0.39941 * 10 9 8 30 30 N 1.28466 * 110.07922 * 359.75441 * 29 10 9 31 31 H 0.96993 * 124.88682 * 179.97438 * 30 29 10 32 32 H 1.08995 * 109.47028 * 175.60984 * 1 2 3 33 33 H 1.08997 * 109.47142 * 295.60848 * 1 2 3 34 34 H 1.08998 * 109.47318 * 55.61141 * 1 2 3 35 35 H 1.09003 * 110.37714 * 332.46802 * 3 2 1 36 36 H 1.09003 * 110.37439 * 94.80938 * 3 2 1 37 37 H 1.08998 * 110.99459 * 278.98154 * 4 3 2 38 38 H 1.09001 * 111.02511 * 155.17391 * 4 3 2 39 39 H 1.08995 * 110.71010 * 205.96450 * 5 4 3 40 40 H 1.09004 * 110.85756 * 82.79563 * 5 4 3 41 41 H 1.08001 * 127.25248 * 359.96838 * 9 8 6 42 42 H 0.96995 * 120.00104 * 359.97438 * 13 11 10 43 43 H 1.09002 * 109.46794 * 305.60981 * 14 13 11 44 44 H 1.08998 * 109.47318 * 65.60978 * 14 13 11 45 45 H 1.08994 * 110.72066 * 336.75275 * 17 15 14 46 46 H 1.08999 * 110.71600 * 99.84783 * 17 15 14 47 47 H 1.09000 * 111.00472 * 153.57944 * 18 17 15 48 48 H 1.09004 * 111.00464 * 277.42888 * 18 17 15 49 49 H 1.08997 * 110.37001 * 81.82793 * 19 18 17 50 50 H 1.09005 * 110.36882 * 204.04198 * 19 18 17 51 51 H 0.97004 * 119.99553 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3028 -0.8296 5 6 2.9158 0.2822 -1.9316 6 6 1.9973 -0.7057 -1.1819 7 1 2.5697 -1.5784 -0.8675 8 6 0.8610 -1.1290 -2.0767 9 6 0.5241 -2.3996 -2.4000 10 6 -0.5990 -2.2876 -3.2535 11 6 -1.3436 -3.4004 -3.8771 12 8 -1.0065 -4.5496 -3.6684 13 7 -2.3966 -3.1417 -4.6775 14 6 -3.1355 -4.2455 -5.2956 15 6 -4.1838 -3.6821 -6.2572 16 1 -4.8669 -3.0261 -5.7177 17 6 -4.9715 -4.8374 -6.9102 18 6 -5.1683 -4.3435 -8.3678 19 6 -3.8389 -3.5904 -8.6232 20 7 -3.5219 -2.9358 -7.3372 21 6 -2.7428 -1.8212 -7.1759 22 1 -2.8819 -1.1851 -6.3142 23 6 -1.7740 -1.5091 -8.1197 24 7 -1.2485 -0.3027 -8.1491 25 14 -1.2161 -2.8011 -9.3481 26 1 -2.1402 -2.8106 -10.5104 27 1 0.1585 -2.4830 -9.8111 28 1 -1.2232 -4.1368 -8.6991 29 7 -0.8507 -1.0010 -3.3908 30 7 -0.0071 -0.3115 -2.7101 31 1 0.0047 0.6570 -2.6588 32 1 -0.3633 -1.0246 -0.0787 33 1 -0.3633 0.4442 0.9267 34 1 -0.3634 0.5804 -0.8480 35 1 1.2889 2.0593 -0.4723 36 1 2.2148 1.7038 1.0182 37 1 4.1302 0.9282 -0.2244 38 1 3.5501 2.2719 -1.2641 39 1 3.7999 -0.2278 -2.3138 40 1 2.3752 0.7725 -2.7412 41 1 1.0092 -3.3078 -2.0737 42 1 -2.6657 -2.2247 -4.8437 43 1 -2.4433 -4.8830 -5.8456 44 1 -3.6305 -4.8304 -4.5204 45 1 -4.3909 -5.7596 -6.8906 46 1 -5.9322 -4.9776 -6.4146 47 1 -5.2793 -5.1836 -9.0534 48 1 -6.0204 -3.6675 -8.4396 49 1 -3.0516 -4.2927 -8.8970 50 1 -3.9701 -2.8442 -9.4068 51 1 -0.5717 -0.0845 -8.8089 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027897553.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:50 Heat of formation + Delta-G solvation = 58.849360 kcal Electronic energy + Delta-G solvation = -31680.583540 eV Core-core repulsion = 27616.581411 eV Total energy + Delta-G solvation = -4064.002129 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.98785 -40.65531 -39.91512 -39.31513 -35.51087 -34.62370 -33.32157 -32.92481 -32.82491 -31.78689 -30.84824 -28.84427 -26.96871 -26.62838 -25.96047 -24.33342 -22.99082 -22.45904 -22.16620 -21.81151 -21.38277 -20.53574 -18.96723 -18.56090 -17.86466 -17.39340 -17.23840 -16.98821 -16.87217 -16.56852 -16.24387 -15.72727 -15.23089 -15.13697 -15.02368 -14.88070 -14.67941 -14.54960 -14.31809 -14.18132 -14.04126 -13.60188 -13.40752 -13.02225 -12.79487 -12.71401 -12.71233 -12.52128 -12.30377 -12.29523 -12.08482 -12.06315 -11.94621 -11.78605 -11.65541 -11.61176 -11.28760 -11.14989 -10.82083 -10.48431 -10.20534 -9.89529 -9.40550 -8.96542 -8.15259 -5.45480 0.51724 0.98342 1.24026 1.34507 1.40390 1.77660 2.26624 2.39547 2.45846 2.97178 3.14119 3.27104 3.31078 3.44961 3.58907 3.71490 3.86081 3.99555 4.07557 4.11582 4.20282 4.29205 4.30750 4.35642 4.40035 4.45630 4.47468 4.55871 4.61120 4.66240 4.74436 4.81548 4.87621 4.90500 4.95331 5.01947 5.02973 5.03494 5.11803 5.15679 5.25213 5.26621 5.28130 5.48514 5.53967 5.74689 5.80804 5.88669 5.99763 6.13166 6.52472 6.78033 6.84994 7.21721 7.56270 8.15447 9.03922 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015296 B = 0.002986 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.152362 B = 9373.806407 C =10352.141864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.524 5.524 3 C 0.031 3.969 4 C -0.120 4.120 5 C -0.141 4.141 6 C 0.144 3.856 7 H 0.122 0.878 8 C 0.022 3.978 9 C -0.183 4.183 10 C -0.033 4.033 11 C 0.591 3.409 12 O -0.581 6.581 13 N -0.691 5.691 14 C 0.115 3.885 15 C 0.140 3.860 16 H 0.057 0.943 17 C -0.112 4.112 18 C -0.116 4.116 19 C 0.094 3.906 20 N -0.620 5.620 21 C -0.207 4.207 22 H 0.070 0.930 23 C -0.027 4.027 24 N -0.951 5.951 25 Si 0.936 3.064 26 H -0.272 1.272 27 H -0.319 1.319 28 H -0.278 1.278 29 N -0.261 5.261 30 N -0.364 5.364 31 H 0.451 0.549 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.023 0.977 35 H 0.050 0.950 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.168 0.832 42 H 0.411 0.589 43 H 0.040 0.960 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.108 0.892 47 H 0.095 0.905 48 H 0.080 0.920 49 H 0.015 0.985 50 H 0.039 0.961 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.472 0.865 15.474 15.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.248 5.248 3 C -0.096 4.096 4 C -0.158 4.158 5 C -0.180 4.180 6 C 0.034 3.966 7 H 0.140 0.860 8 C -0.105 4.105 9 C -0.212 4.212 10 C -0.193 4.193 11 C 0.376 3.624 12 O -0.461 6.461 13 N -0.341 5.341 14 C -0.011 4.011 15 C 0.034 3.966 16 H 0.075 0.925 17 C -0.151 4.151 18 C -0.154 4.154 19 C -0.030 4.030 20 N -0.346 5.346 21 C -0.336 4.336 22 H 0.088 0.912 23 C -0.221 4.221 24 N -0.599 5.599 25 Si 0.767 3.233 26 H -0.198 1.198 27 H -0.249 1.249 28 H -0.204 1.204 29 N -0.097 5.097 30 N -0.081 5.081 31 H 0.298 0.702 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.076 0.924 41 H 0.185 0.815 42 H 0.250 0.750 43 H 0.058 0.942 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.126 0.874 47 H 0.113 0.887 48 H 0.099 0.901 49 H 0.033 0.967 50 H 0.057 0.943 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.216 0.668 15.455 15.627 hybrid contribution 0.844 0.423 -1.539 1.805 sum 3.060 1.091 13.916 14.290 Atomic orbital electron populations 1.22688 0.87606 1.01480 1.01290 1.63946 1.08077 1.15615 1.37153 1.23303 0.96080 0.88171 1.02016 1.22713 0.97597 0.99540 0.95904 1.22932 0.99957 0.97000 0.98120 1.21344 0.89669 0.99418 0.86149 0.85985 1.21905 0.97552 0.89975 1.01089 1.21659 0.98555 0.98265 1.02738 1.21905 1.01359 0.90703 1.05296 1.17233 0.79906 0.86691 0.78560 1.90677 1.69034 1.21730 1.64670 1.46032 1.30239 1.11996 1.45857 1.22019 0.94333 0.88791 0.95915 1.21580 0.92384 0.93499 0.89120 0.92487 1.22554 1.00811 0.96243 0.95443 1.22670 0.95671 0.99976 0.97071 1.22191 0.96504 0.95199 0.89096 1.45119 1.57600 1.29872 1.02018 1.18406 1.09360 0.97591 1.08196 0.91245 1.25572 0.98132 0.97565 1.00882 1.69883 1.31891 1.19805 1.38282 0.86126 0.76024 0.80730 0.80377 1.19819 1.24872 1.20381 1.73680 1.16486 1.04870 1.14710 1.43583 1.21162 1.10235 1.33114 0.70172 0.92496 0.89768 0.95831 0.93160 0.88435 0.89179 0.89135 0.88928 0.92358 0.81465 0.75035 0.94177 0.90143 0.90528 0.87407 0.88663 0.90098 0.96710 0.94305 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 8.29 127.69 1.06 1.39 16 2 N -0.52 -8.90 5.44 -890.92 -4.85 -13.75 16 3 C 0.03 0.39 6.73 86.77 0.58 0.98 16 4 C -0.12 -1.32 7.08 31.98 0.23 -1.09 16 5 C -0.14 -2.19 6.46 31.78 0.21 -1.98 16 6 C 0.14 2.65 3.90 44.51 0.17 2.83 16 7 H 0.12 2.11 8.13 -2.39 -0.02 2.10 16 8 C 0.02 0.55 3.71 41.40 0.15 0.71 16 9 C -0.18 -5.88 10.72 22.41 0.24 -5.64 16 10 C -0.03 -1.28 7.13 42.46 0.30 -0.98 16 11 C 0.59 25.83 7.82 86.75 0.68 26.50 16 12 O -0.58 -27.32 16.92 -3.92 -0.07 -27.39 16 13 N -0.69 -29.33 4.81 -466.09 -2.24 -31.57 16 14 C 0.11 4.38 5.17 86.38 0.45 4.83 16 15 C 0.14 5.06 3.33 45.34 0.15 5.21 16 16 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 17 C -0.11 -3.00 6.48 31.78 0.21 -2.80 16 18 C -0.12 -3.30 7.08 31.98 0.23 -3.07 16 19 C 0.09 3.88 4.75 86.79 0.41 4.29 16 20 N -0.62 -28.28 2.88 -667.45 -1.92 -30.20 16 21 C -0.21 -11.28 8.88 84.03 0.75 -10.53 16 22 H 0.07 4.05 6.62 -2.91 -0.02 4.03 16 23 C -0.03 -1.57 5.47 84.86 0.46 -1.10 16 24 N -0.95 -59.42 13.97 21.65 0.30 -59.12 16 25 Si 0.94 48.83 24.31 68.60 1.67 50.50 16 26 H -0.27 -13.33 6.72 99.48 0.67 -12.66 16 27 H -0.32 -17.21 7.11 99.48 0.71 -16.50 16 28 H -0.28 -14.46 6.42 99.48 0.64 -13.82 16 29 N -0.26 -9.67 11.92 -48.17 -0.57 -10.24 16 30 N -0.36 -10.13 5.10 -47.93 -0.24 -10.37 16 31 H 0.45 10.04 7.86 -220.00 -1.73 8.31 16 32 H 0.06 1.30 7.23 -2.39 -0.02 1.28 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.02 0.44 5.33 -2.39 -0.01 0.43 16 35 H 0.05 0.61 7.71 -2.39 -0.02 0.59 16 36 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.06 1.04 7.56 -2.39 -0.02 1.02 16 41 H 0.17 4.95 8.06 -2.91 -0.02 4.92 16 42 H 0.41 18.29 5.71 -92.71 -0.53 17.76 16 43 H 0.04 1.72 8.13 -2.39 -0.02 1.70 16 44 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 45 H 0.08 1.96 7.85 -2.39 -0.02 1.95 16 46 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 49 H 0.02 0.66 5.22 -2.39 -0.01 0.65 16 50 H 0.04 1.72 7.02 -2.38 -0.02 1.70 16 51 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -75.06 390.76 -3.06 -78.12 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: -1.40 Total: 34.49 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 6.28 Total: 19.54 kcal Atomic # 7 Polarization: -145.72 SS G_CDS: -9.53 Total: -155.26 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.07 Total: -27.39 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 1.67 Total: 50.50 kcal Total: -75.06 -3.06 -78.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027897553.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.965 kcal (2) G-P(sol) polarization free energy of solvation -75.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds