Wall clock time and date at job start Wed Apr 1 2020 05:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34776 * 120.00076 * 2 1 4 4 O 1.21570 * 120.00517 * 175.94342 * 3 2 1 5 5 C 1.47709 * 119.99731 * 355.94559 * 3 2 1 6 6 C 1.41507 * 126.51702 * 185.86178 * 5 3 2 7 7 C 1.35368 * 105.50315 * 179.97438 * 6 5 3 8 8 C 1.50697 * 126.38465 * 179.97438 * 7 6 5 9 9 H 1.09002 * 110.33701 * 354.29966 * 8 7 6 10 10 C 1.54906 * 110.37549 * 116.55244 * 8 7 6 11 11 C 1.55258 * 101.60320 * 155.81368 * 10 8 7 12 12 C 1.54320 * 103.08246 * 324.49082 * 11 10 8 13 13 N 1.47439 * 107.23671 * 22.20288 * 12 11 10 14 14 C 1.46897 * 111.00381 * 123.25780 * 13 12 11 15 15 N 1.35037 * 107.22838 * 359.97438 * 7 6 5 16 16 H 0.96998 * 124.88595 * 179.97438 * 15 7 6 17 17 N 1.28467 * 110.22861 * 359.74663 * 15 7 6 18 18 C 1.46498 * 120.00281 * 180.02562 * 2 1 3 19 19 H 1.08999 * 110.78029 * 181.78393 * 18 2 1 20 20 C 1.55405 * 110.85232 * 305.08338 * 18 2 1 21 21 C 1.54906 * 101.66835 * 153.70070 * 20 18 2 22 22 N 1.47422 * 104.83063 * 323.07629 * 21 20 18 23 23 C 1.36936 * 125.64549 * 204.09831 * 22 21 20 24 24 H 1.08004 * 119.99780 * 180.02562 * 23 22 21 25 25 C 1.38811 * 120.00395 * 0.03761 * 23 22 21 26 26 N 1.31622 * 119.99925 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00317 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47839 * 89.99572 * 27 25 23 29 29 H 1.48498 * 109.47214 * 209.99982 * 27 25 23 30 30 H 1.48501 * 109.46902 * 329.99579 * 27 25 23 31 31 C 1.47016 * 108.70485 * 24.12614 * 22 21 20 32 32 H 1.09001 * 109.47114 * 275.68539 * 1 2 3 33 33 H 1.09002 * 109.47419 * 35.68810 * 1 2 3 34 34 H 1.09004 * 109.47439 * 155.68817 * 1 2 3 35 35 H 1.08003 * 127.25132 * 359.95843 * 6 5 3 36 36 H 1.09002 * 110.98847 * 273.98766 * 10 8 7 37 37 H 1.09000 * 110.99260 * 37.80257 * 10 8 7 38 38 H 1.08994 * 110.74817 * 206.05169 * 11 10 8 39 39 H 1.08999 * 110.75548 * 82.92943 * 11 10 8 40 40 H 1.09002 * 109.88524 * 262.79262 * 12 11 10 41 41 H 1.09003 * 109.89121 * 141.60677 * 12 11 10 42 42 H 1.09002 * 109.47172 * 299.16114 * 14 13 12 43 43 H 1.08996 * 109.47227 * 59.15924 * 14 13 12 44 44 H 1.09004 * 109.47286 * 179.15817 * 14 13 12 45 45 H 1.08999 * 110.88842 * 35.62430 * 20 18 2 46 46 H 1.09003 * 111.06866 * 271.85442 * 20 18 2 47 47 H 1.09001 * 110.36320 * 204.23680 * 21 20 18 48 48 H 1.08998 * 110.36644 * 81.91181 * 21 20 18 49 49 H 0.96999 * 120.00342 * 180.02562 * 26 25 23 50 50 H 1.09002 * 109.88193 * 118.35743 * 31 22 21 51 51 H 1.08999 * 109.88397 * 239.36917 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3522 1.1686 0.0745 5 6 1.4030 2.4448 -0.0904 6 6 1.9692 3.7354 -0.2179 7 6 0.9190 4.5883 -0.2634 8 6 0.9902 6.0878 -0.3950 9 1 2.0264 6.4232 -0.3499 10 6 0.3328 6.5447 -1.7212 11 6 -0.0601 8.0090 -1.3867 12 6 -0.4583 7.9323 0.1023 13 7 0.1925 6.7362 0.6676 14 6 1.0357 7.0895 1.8174 15 7 -0.2044 3.8449 -0.1690 16 1 -1.1069 4.2002 -0.1752 17 7 0.0941 2.5989 -0.0746 18 6 2.1975 -1.2687 -0.0006 19 1 3.2730 -1.0942 0.0312 20 6 1.7512 -2.1657 1.1874 21 6 2.0614 -3.5827 0.6439 22 7 1.7298 -3.5174 -0.7910 23 6 1.3954 -4.5839 -1.5822 24 1 1.1688 -4.4311 -2.6270 25 6 1.3474 -5.8613 -1.0412 26 7 1.6238 -6.0476 0.2321 27 14 0.8920 -7.3163 -2.1206 28 1 2.1216 -7.8878 -2.7260 29 1 0.2184 -8.3520 -1.2968 30 1 -0.0263 -6.8656 -3.1971 31 6 1.8182 -2.1177 -1.2321 32 1 -0.3633 0.1018 1.0226 33 1 -0.3634 0.8347 -0.5995 34 1 -0.3634 -0.9365 -0.4231 35 1 3.0183 3.9870 -0.2679 36 1 1.0471 6.5085 -2.5438 37 1 -0.5499 5.9460 -1.9460 38 1 -0.9050 8.3307 -1.9955 39 1 0.7893 8.6780 -1.5245 40 1 -1.5409 7.8430 0.1924 41 1 -0.1129 8.8243 0.6249 42 1 1.8169 7.7788 1.4970 43 1 0.4240 7.5647 2.5842 44 1 1.4920 6.1870 2.2243 45 1 0.6858 -2.0474 1.3849 46 1 2.3380 -1.9528 2.0811 47 1 1.4394 -4.3252 1.1437 48 1 3.1171 -3.8180 0.7789 49 1 1.5907 -6.9403 0.6101 50 1 2.5848 -2.0190 -2.0007 51 1 0.8553 -1.7913 -1.6251 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033096529.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:26 Heat of formation + Delta-G solvation = 70.785764 kcal Electronic energy + Delta-G solvation = -30739.271604 eV Core-core repulsion = 26675.787076 eV Total energy + Delta-G solvation = -4063.484528 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.75667 -40.97176 -39.86494 -38.88935 -36.30838 -34.18600 -33.13947 -32.78798 -32.72493 -31.07876 -29.36047 -28.70986 -27.85588 -26.65180 -26.51178 -24.85141 -23.03018 -22.12070 -22.09267 -21.85127 -21.30005 -19.86565 -18.95990 -18.85089 -17.94141 -17.25532 -17.12366 -16.89330 -16.67617 -16.14766 -15.94411 -15.69477 -15.36136 -15.03779 -14.81233 -14.56716 -14.47424 -14.32760 -14.13897 -13.96086 -13.73155 -13.59265 -13.39443 -13.26813 -12.96616 -12.70932 -12.67383 -12.49189 -12.41811 -12.36215 -12.19861 -12.05350 -12.00697 -11.82865 -11.70443 -11.54883 -11.37277 -11.16238 -10.75612 -10.41109 -9.99486 -9.65325 -9.44140 -8.91766 -7.77178 -5.23172 0.50118 1.05712 1.47824 1.50315 1.58851 1.72656 2.12664 2.29586 2.51056 2.90193 3.27393 3.32774 3.56865 3.64905 3.69341 3.82456 3.91170 3.95151 4.07073 4.10083 4.23031 4.28375 4.34691 4.42794 4.50294 4.54322 4.59317 4.60357 4.65960 4.71447 4.77335 4.83398 4.84759 4.97370 4.97650 5.00965 5.03348 5.03835 5.10372 5.11533 5.29984 5.32262 5.45498 5.56325 5.57785 5.77047 5.87868 5.99571 6.12744 6.28402 6.35425 6.84421 7.08793 7.09544 7.74712 8.39119 9.24740 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.028932 B = 0.001934 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.556041 B =14473.897198 C =14808.486602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.587 5.587 3 C 0.595 3.405 4 O -0.575 6.575 5 C -0.029 4.029 6 C -0.192 4.192 7 C 0.058 3.942 8 C 0.138 3.862 9 H 0.090 0.910 10 C -0.122 4.122 11 C -0.136 4.136 12 C 0.040 3.960 13 N -0.544 5.544 14 C 0.020 3.980 15 N -0.350 5.350 16 H 0.458 0.542 17 N -0.254 5.254 18 C 0.140 3.860 19 H 0.090 0.910 20 C -0.132 4.132 21 C 0.158 3.842 22 N -0.621 5.621 23 C -0.239 4.239 24 H 0.081 0.919 25 C -0.067 4.067 26 N -0.948 5.948 27 Si 0.984 3.016 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.268 1.268 31 C 0.131 3.869 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.161 0.839 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.040 0.960 43 H 0.078 0.922 44 H 0.056 0.944 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.083 0.917 48 H -0.011 1.011 49 H 0.249 0.751 50 H 0.017 0.983 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.393 34.182 -0.154 34.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.317 5.317 3 C 0.383 3.617 4 O -0.454 6.454 5 C -0.187 4.187 6 C -0.221 4.221 7 C -0.070 4.070 8 C 0.028 3.972 9 H 0.107 0.893 10 C -0.160 4.160 11 C -0.174 4.174 12 C -0.087 4.087 13 N -0.269 5.269 14 C -0.128 4.128 15 N -0.065 5.065 16 H 0.306 0.694 17 N -0.092 5.092 18 C 0.036 3.964 19 H 0.108 0.892 20 C -0.171 4.171 21 C 0.032 3.968 22 N -0.348 5.348 23 C -0.368 4.368 24 H 0.099 0.901 25 C -0.259 4.259 26 N -0.598 5.598 27 Si 0.812 3.188 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.193 1.193 31 C 0.005 3.995 32 H 0.083 0.917 33 H 0.125 0.875 34 H 0.085 0.915 35 H 0.178 0.822 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.097 0.903 44 H 0.075 0.925 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.101 0.899 48 H 0.007 0.993 49 H 0.058 0.942 50 H 0.035 0.965 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.148 33.015 0.165 34.006 hybrid contribution 1.123 -0.228 -0.562 1.276 sum -7.025 32.787 -0.396 33.534 Atomic orbital electron populations 1.22190 0.77159 1.03953 1.03168 1.47681 1.08467 1.04453 1.71090 1.17395 0.85940 0.82568 0.75830 1.90736 1.14554 1.87277 1.52812 1.21526 0.90453 0.94446 1.12281 1.21583 1.00694 0.89986 1.09846 1.21230 0.85757 0.95106 1.04936 1.21115 0.98610 0.85015 0.92453 0.89251 1.22812 1.01107 0.96752 0.95367 1.22805 1.02708 0.95857 0.96019 1.22922 1.00312 0.91073 0.94410 1.63320 1.30304 1.26074 1.07195 1.22545 0.96325 1.00495 0.93411 1.43366 1.10392 1.02524 1.50224 0.69395 1.73688 1.15452 1.00660 1.19400 1.21909 0.96658 0.82127 0.95716 0.89183 1.23211 1.01670 0.95386 0.96850 1.21716 0.96675 0.94083 0.84292 1.44695 1.80874 1.01947 1.07253 1.19436 1.38679 0.86033 0.92654 0.90086 1.25672 1.02384 1.00012 0.97830 1.70028 1.56337 1.20854 1.12558 0.84993 0.77625 0.78603 0.77562 1.21561 1.21735 1.19282 1.21589 0.98268 0.84855 0.94836 0.91745 0.87537 0.91497 0.82183 0.89388 0.90558 0.89104 0.90538 0.89739 0.91480 0.94157 0.90347 0.92510 0.90572 0.90377 0.89934 0.99303 0.94165 0.96474 0.94204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.24 8.20 127.77 1.05 3.29 16 2 N -0.59 -20.42 2.89 -819.04 -2.36 -22.79 16 3 C 0.59 21.13 7.68 86.75 0.67 21.79 16 4 O -0.58 -23.98 16.31 -3.94 -0.06 -24.04 16 5 C -0.03 -0.81 6.83 42.46 0.29 -0.52 16 6 C -0.19 -4.47 10.73 22.41 0.24 -4.23 16 7 C 0.06 0.96 6.13 41.40 0.25 1.21 16 8 C 0.14 1.45 2.91 44.64 0.13 1.58 16 9 H 0.09 0.91 7.76 -2.39 -0.02 0.89 16 10 C -0.12 -0.87 6.49 32.02 0.21 -0.66 16 11 C -0.14 -0.58 6.94 31.82 0.22 -0.36 16 12 C 0.04 0.23 6.90 86.65 0.60 0.83 16 13 N -0.54 -5.26 5.08 -891.01 -4.53 -9.79 16 14 C 0.02 0.20 9.12 127.69 1.17 1.36 16 15 N -0.35 -5.75 6.83 -47.93 -0.33 -6.08 16 16 H 0.46 4.79 8.96 -219.99 -1.97 2.81 16 17 N -0.25 -5.91 8.72 -48.17 -0.42 -6.33 16 18 C 0.14 5.66 3.36 46.27 0.16 5.82 16 19 H 0.09 3.92 7.00 -2.39 -0.02 3.90 16 20 C -0.13 -5.38 6.64 32.07 0.21 -5.17 16 21 C 0.16 8.15 5.89 86.85 0.51 8.66 16 22 N -0.62 -33.46 3.39 -692.02 -2.35 -35.81 16 23 C -0.24 -13.76 10.27 84.03 0.86 -12.89 16 24 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 25 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 26 N -0.95 -57.25 10.09 21.65 0.22 -57.03 16 27 Si 0.98 46.27 29.55 68.60 2.03 48.30 16 28 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 29 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 30 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 31 C 0.13 5.92 6.75 86.73 0.59 6.50 16 32 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.11 2.78 5.27 -2.39 -0.01 2.77 16 34 H 0.07 2.08 6.53 -2.39 -0.02 2.07 16 35 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 36 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.08 0.55 8.05 -2.39 -0.02 0.53 16 38 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.07 0.31 7.58 -2.39 -0.02 0.29 16 42 H 0.04 0.31 8.09 -2.39 -0.02 0.30 16 43 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 45 H 0.08 2.94 7.15 -2.39 -0.02 2.92 16 46 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 47 H 0.08 4.74 5.87 -2.39 -0.01 4.72 16 48 H -0.01 -0.62 8.14 -2.39 -0.02 -0.63 16 49 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 50 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 51 H 0.04 1.72 6.38 -2.39 -0.02 1.71 16 Total: -1.00 -73.14 398.81 -1.22 -74.36 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -1.03 Total: 15.35 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: 7.61 Total: 23.85 kcal Atomic # 7 Polarization: -128.05 SS G_CDS: -9.77 Total: -137.82 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.06 Total: -24.04 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -73.14 -1.22 -74.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033096529.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.146 kcal (2) G-P(sol) polarization free energy of solvation -73.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds