Wall clock time and date at job start Wed Apr 1 2020 05:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46502 * 109.46999 * 2 1 4 4 C 1.34773 * 120.00358 * 274.13091 * 3 2 1 5 5 O 1.21287 * 119.99687 * 4.30319 * 4 3 2 6 6 C 1.50695 * 120.00287 * 184.30536 * 4 3 2 7 7 H 1.09000 * 109.47209 * 319.56643 * 6 4 3 8 8 C 1.53159 * 109.46691 * 199.57334 * 6 4 3 9 9 C 1.53432 * 109.25520 * 170.81983 * 8 6 4 10 10 C 1.50922 * 108.20116 * 48.69747 * 9 8 6 11 11 N 1.30329 * 127.90675 * 163.99903 * 10 9 8 12 12 C 1.33470 * 109.72660 * 180.08914 * 11 10 9 13 13 C 1.50700 * 125.49779 * 180.02562 * 12 11 10 14 14 N 1.30975 * 109.00850 * 359.97438 * 12 11 10 15 15 N 1.34681 * 124.05327 * 344.04182 * 10 9 8 16 16 C 1.46300 * 125.04096 * 359.89674 * 15 10 9 17 17 C 1.46507 * 119.99758 * 94.13650 * 3 2 1 18 18 H 1.09000 * 110.63897 * 176.73262 * 17 3 2 19 19 C 1.55157 * 110.71597 * 300.06319 * 17 3 2 20 20 C 1.55121 * 101.48653 * 82.70042 * 19 17 3 21 21 N 1.47426 * 104.72444 * 37.29403 * 20 19 17 22 22 C 1.36930 * 125.64868 * 155.82061 * 21 20 19 23 23 H 1.08002 * 119.99814 * 188.52658 * 22 21 20 24 24 C 1.38815 * 120.00126 * 8.52311 * 22 21 20 25 25 N 1.31622 * 120.00061 * 205.77591 * 24 22 21 26 26 Si 1.86794 * 119.99910 * 25.77498 * 24 22 21 27 27 H 1.48496 * 109.47426 * 269.99849 * 26 24 22 28 28 H 1.48504 * 109.47212 * 30.00320 * 26 24 22 29 29 H 1.48507 * 109.46896 * 149.99709 * 26 24 22 30 30 C 1.47023 * 108.69770 * 335.55325 * 21 20 19 31 31 H 1.09005 * 109.47201 * 305.62277 * 1 2 3 32 32 H 1.09000 * 109.47493 * 65.62491 * 1 2 3 33 33 H 1.09003 * 109.47132 * 185.63297 * 1 2 3 34 34 H 1.08997 * 109.47356 * 240.00236 * 2 1 3 35 35 H 1.08998 * 109.47485 * 120.00028 * 2 1 3 36 36 H 1.08998 * 109.50769 * 290.75445 * 8 6 4 37 37 H 1.09007 * 109.50643 * 50.88903 * 8 6 4 38 38 H 1.09003 * 109.71803 * 168.37482 * 9 8 6 39 39 H 1.09000 * 109.72077 * 289.02132 * 9 8 6 40 40 H 1.08995 * 109.47457 * 269.95926 * 13 12 11 41 41 H 1.09009 * 109.46958 * 29.95450 * 13 12 11 42 42 H 1.08992 * 109.47428 * 149.94973 * 13 12 11 43 43 H 1.09002 * 109.58461 * 223.16610 * 16 15 10 44 44 H 1.09007 * 109.59043 * 102.74660 * 16 15 10 45 45 H 1.09005 * 111.00050 * 200.94340 * 19 17 3 46 46 H 1.09005 * 111.00552 * 324.78301 * 19 17 3 47 47 H 1.08999 * 110.49493 * 278.45084 * 20 19 17 48 48 H 1.09003 * 110.34387 * 156.05622 * 20 19 17 49 49 H 0.97005 * 119.99456 * 354.96060 * 25 24 22 50 50 H 1.09007 * 109.88010 * 120.70951 * 30 21 20 51 51 H 1.08999 * 109.88090 * 241.71417 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1636 2.0447 -1.1641 5 8 1.8170 1.5267 -2.2046 6 6 2.7568 3.4299 -1.1730 7 1 2.3714 3.9957 -0.3248 8 6 2.3760 4.1399 -2.4755 9 6 2.7820 5.6167 -2.3842 10 6 4.2088 5.6841 -1.8969 11 7 5.0258 6.6982 -1.9494 12 6 6.2009 6.3581 -1.4158 13 6 7.4009 7.2615 -1.2938 14 7 6.1427 5.1128 -1.0143 15 7 4.8570 4.6560 -1.3167 16 6 4.2833 3.3327 -1.0709 17 6 2.3487 2.0413 1.2655 18 1 2.7493 3.0389 1.0854 19 6 1.1062 2.1038 2.1927 20 6 1.1317 0.6938 2.8389 21 7 2.5623 0.3998 3.0404 22 6 3.0757 -0.4707 3.9642 23 1 4.1421 -0.5163 4.1290 24 6 2.2255 -1.2947 4.6890 25 7 2.5906 -1.7385 5.8732 26 14 0.5634 -1.7735 3.9839 27 1 -0.4557 -0.7756 4.3970 28 1 0.6468 -1.8113 2.5017 29 1 0.1777 -3.1145 4.4923 30 6 3.3458 1.1914 2.0806 31 1 -0.3634 0.5986 0.8354 32 1 -0.3634 0.4241 -0.9360 33 1 -0.3633 -1.0227 0.1009 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 2.8954 3.6707 -3.3111 37 1 1.2992 4.0672 -2.6283 38 1 2.7070 6.0803 -3.3679 39 1 2.1288 6.1350 -1.6821 40 1 8.0192 7.1670 -2.1864 41 1 7.0688 8.2946 -1.1896 42 1 7.9825 6.9768 -0.4171 43 1 4.5620 2.9933 -0.0733 44 1 4.6553 2.6291 -1.8157 45 1 1.2192 2.8843 2.9453 46 1 0.1940 2.2503 1.6143 47 1 0.6841 -0.0408 2.1696 48 1 0.6086 0.7056 3.7951 49 1 3.4815 -1.5507 6.2079 50 1 4.0379 1.8425 2.6148 51 1 3.8994 0.5272 1.4170 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033907096.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:16 Heat of formation + Delta-G solvation = 90.218469 kcal Electronic energy + Delta-G solvation = -32495.217454 eV Core-core repulsion = 28432.575592 eV Total energy + Delta-G solvation = -4062.641863 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.60513 -40.71221 -38.39442 -36.88444 -34.80159 -33.51163 -32.60943 -32.30461 -31.31498 -29.84451 -29.56338 -28.63950 -27.76190 -24.76620 -24.31932 -23.93734 -22.43851 -21.67592 -20.97625 -20.55979 -19.94622 -18.61133 -17.84553 -17.50930 -17.01392 -16.36746 -16.07372 -15.58364 -15.17489 -15.12886 -14.82782 -14.63136 -14.31514 -13.95172 -13.61435 -13.49545 -13.43576 -13.33829 -13.12581 -12.82807 -12.78965 -12.44725 -12.25835 -12.20558 -12.08367 -11.98940 -11.92066 -11.58275 -11.45626 -11.29712 -11.19075 -11.09794 -10.90849 -10.56495 -10.25160 -10.15315 -9.92148 -9.83805 -9.70747 -9.49562 -9.35211 -8.69334 -8.58533 -7.19503 -6.42661 -3.28656 1.38990 1.87304 2.45229 2.65456 2.84423 3.31051 3.39881 3.56706 3.62615 3.90928 4.00372 4.11545 4.44023 4.49870 4.53454 4.54923 4.76106 4.83280 4.85193 4.89502 4.99108 5.04003 5.09114 5.20032 5.28523 5.30556 5.32713 5.39420 5.46085 5.49220 5.52243 5.58929 5.59589 5.69841 5.71216 5.75489 5.91878 6.02171 6.10168 6.12831 6.24358 6.25364 6.30840 6.32889 6.48965 6.53200 6.56406 6.62450 7.35976 7.56550 7.92088 7.99400 8.24252 8.93841 9.48108 10.13156 11.06695 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.003190 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.396230 B = 8775.569487 C =10034.605918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.101 3.899 3 N -0.587 5.587 4 C 0.525 3.475 5 O -0.533 6.533 6 C -0.128 4.128 7 H 0.109 0.891 8 C -0.107 4.107 9 C -0.041 4.041 10 C 0.278 3.722 11 N -0.539 5.539 12 C 0.215 3.785 13 C -0.057 4.057 14 N -0.311 5.311 15 N -0.373 5.373 16 C 0.140 3.860 17 C 0.113 3.887 18 H 0.096 0.904 19 C -0.143 4.143 20 C 0.089 3.911 21 N -0.604 5.604 22 C -0.332 4.332 23 H 0.077 0.923 24 C -0.019 4.019 25 N -0.918 5.918 26 Si 1.061 2.939 27 H -0.295 1.295 28 H -0.284 1.284 29 H -0.299 1.299 30 C 0.127 3.873 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.106 0.894 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.049 0.951 48 H 0.061 0.939 49 H 0.264 0.736 50 H 0.040 0.960 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.387 15.410 -16.442 22.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.020 4.020 3 N -0.319 5.319 4 C 0.311 3.689 5 O -0.409 6.409 6 C -0.150 4.150 7 H 0.127 0.873 8 C -0.145 4.145 9 C -0.081 4.081 10 C 0.002 3.998 11 N -0.267 5.267 12 C -0.067 4.067 13 C -0.116 4.116 14 N -0.139 5.139 15 N -0.164 5.164 16 C 0.018 3.982 17 C 0.009 3.991 18 H 0.114 0.886 19 C -0.182 4.182 20 C -0.036 4.036 21 N -0.333 5.333 22 C -0.459 4.459 23 H 0.094 0.906 24 C -0.219 4.219 25 N -0.559 5.559 26 Si 0.894 3.106 27 H -0.223 1.223 28 H -0.210 1.210 29 H -0.227 1.227 30 C 0.000 4.000 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.124 0.876 44 H 0.114 0.886 45 H 0.101 0.899 46 H 0.093 0.907 47 H 0.066 0.934 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.057 0.943 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.375 14.056 -16.335 21.594 hybrid contribution 1.317 0.577 -0.121 1.443 sum -0.057 14.633 -16.457 22.022 Atomic orbital electron populations 1.22301 0.95972 1.02563 1.02140 1.21715 0.94616 0.81386 1.04317 1.48058 1.63854 1.14454 1.05522 1.19929 0.79036 0.86311 0.83668 1.90710 1.50255 1.68437 1.31533 1.21774 0.94482 0.96568 1.02178 0.87275 1.21584 1.04011 0.92791 0.96110 1.20447 0.86056 0.97922 1.03636 1.24320 0.97099 0.83952 0.94467 1.70176 1.01943 1.28662 1.25946 1.24435 0.95046 0.91129 0.96077 1.20074 0.91077 0.96979 1.03459 1.77996 0.97133 1.13133 1.25645 1.50110 1.09257 1.11924 1.45080 1.21709 0.90905 0.80664 1.04963 1.22413 0.97151 0.96104 0.83435 0.88643 1.23200 0.96886 0.99684 0.98418 1.22452 0.88154 0.93615 0.99366 1.44792 0.99916 1.49260 1.39290 1.19999 0.94280 1.16726 1.14863 0.90553 1.25796 1.04545 0.96843 0.94756 1.70903 1.20308 1.51332 1.13312 0.83926 0.75582 0.75961 0.75177 1.22254 1.21040 1.22706 1.21645 0.93241 0.93836 0.91294 0.91611 0.92507 0.91640 0.90632 0.87710 0.89811 0.88604 0.87360 0.87975 0.89963 0.89608 0.89976 0.87613 0.88624 0.89948 0.90744 0.93400 0.92093 0.92586 0.94255 0.94712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 9.09 37.15 0.34 -2.03 16 2 C 0.10 1.53 4.99 -4.04 -0.02 1.51 16 3 N -0.59 -7.87 2.45 -164.04 -0.40 -8.27 16 4 C 0.52 6.49 6.77 -10.99 -0.07 6.42 16 5 O -0.53 -7.99 15.87 5.55 0.09 -7.90 16 6 C -0.13 -1.20 1.67 -91.54 -0.15 -1.35 16 7 H 0.11 0.90 6.49 -51.93 -0.34 0.57 16 8 C -0.11 -0.85 4.60 -26.43 -0.12 -0.97 16 9 C -0.04 -0.30 6.33 -27.55 -0.17 -0.48 16 10 C 0.28 3.15 7.72 -155.78 -1.20 1.95 16 11 N -0.54 -6.92 11.18 -8.03 -0.09 -7.01 16 12 C 0.21 2.70 8.15 -156.43 -1.27 1.42 16 13 C -0.06 -0.47 10.51 36.01 0.38 -0.09 16 14 N -0.31 -4.32 12.74 32.50 0.41 -3.91 16 15 N -0.37 -4.56 4.04 -58.29 -0.24 -4.79 16 16 C 0.14 1.48 6.40 -4.00 -0.03 1.45 16 17 C 0.11 1.53 3.04 -66.10 -0.20 1.32 16 18 H 0.10 1.04 4.91 -51.93 -0.25 0.79 16 19 C -0.14 -2.05 6.15 -24.47 -0.15 -2.20 16 20 C 0.09 1.71 3.53 -2.41 -0.01 1.70 16 21 N -0.60 -13.34 2.81 -169.94 -0.48 -13.82 16 22 C -0.33 -8.92 10.45 -15.06 -0.16 -9.08 16 23 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 24 C -0.02 -0.52 5.42 -17.43 -0.09 -0.62 16 25 N -0.92 -27.86 13.70 55.49 0.76 -27.10 16 26 Si 1.06 25.12 24.69 -169.99 -4.20 20.92 16 27 H -0.29 -6.61 6.51 56.52 0.37 -6.24 16 28 H -0.28 -6.08 6.12 56.52 0.35 -5.74 16 29 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 30 C 0.13 2.23 6.13 -3.07 -0.02 2.22 16 31 H 0.07 0.90 4.73 -51.93 -0.25 0.66 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.14 7.61 -51.93 -0.40 0.74 16 35 H 0.10 1.88 5.09 -51.93 -0.26 1.61 16 36 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 37 H 0.10 0.70 8.11 -51.93 -0.42 0.28 16 38 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.61 8.14 -51.92 -0.42 0.18 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.11 1.14 7.21 -51.93 -0.37 0.76 16 44 H 0.10 1.02 8.12 -51.92 -0.42 0.60 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.07 0.93 6.80 -51.93 -0.35 0.58 16 47 H 0.05 0.92 1.68 -51.93 -0.09 0.83 16 48 H 0.06 1.30 5.80 -51.93 -0.30 1.00 16 49 H 0.26 7.94 8.73 -40.82 -0.36 7.58 16 50 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.04 0.64 7.89 -51.93 -0.41 0.23 16 LS Contribution 380.80 15.07 5.74 5.74 Total: -1.00 -33.75 380.80 -9.12 -42.87 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -7.76 Total: 2.12 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -2.96 Total: 1.16 kcal Atomic # 7 Polarization: -64.87 SS G_CDS: -0.03 Total: -64.90 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: 0.09 Total: -7.90 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -4.20 Total: 20.92 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.75 -9.12 -42.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033907096.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.086 kcal (2) G-P(sol) polarization free energy of solvation -33.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds