Wall clock time and date at job start Wed Apr 1 2020 05:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46502 * 109.46999 * 2 1 4 4 C 1.34773 * 120.00358 * 274.13091 * 3 2 1 5 5 O 1.21287 * 119.99687 * 4.30319 * 4 3 2 6 6 C 1.50695 * 120.00287 * 184.30536 * 4 3 2 7 7 H 1.09000 * 109.47209 * 319.56643 * 6 4 3 8 8 C 1.53159 * 109.46691 * 199.57334 * 6 4 3 9 9 C 1.53432 * 109.25520 * 170.81983 * 8 6 4 10 10 C 1.50922 * 108.20116 * 48.69747 * 9 8 6 11 11 N 1.30329 * 127.90675 * 163.99903 * 10 9 8 12 12 C 1.33470 * 109.72660 * 180.08914 * 11 10 9 13 13 C 1.50700 * 125.49779 * 180.02562 * 12 11 10 14 14 N 1.30975 * 109.00850 * 359.97438 * 12 11 10 15 15 N 1.34681 * 124.05327 * 344.04182 * 10 9 8 16 16 C 1.46300 * 125.04096 * 359.89674 * 15 10 9 17 17 C 1.46507 * 119.99758 * 94.13650 * 3 2 1 18 18 H 1.09000 * 110.63897 * 176.73262 * 17 3 2 19 19 C 1.55157 * 110.71597 * 300.06319 * 17 3 2 20 20 C 1.55121 * 101.48653 * 82.70042 * 19 17 3 21 21 N 1.47426 * 104.72444 * 37.29403 * 20 19 17 22 22 C 1.36930 * 125.64868 * 155.82061 * 21 20 19 23 23 H 1.08002 * 119.99814 * 188.52658 * 22 21 20 24 24 C 1.38815 * 120.00126 * 8.52311 * 22 21 20 25 25 N 1.31622 * 120.00061 * 205.77591 * 24 22 21 26 26 Si 1.86794 * 119.99910 * 25.77498 * 24 22 21 27 27 H 1.48496 * 109.47426 * 269.99849 * 26 24 22 28 28 H 1.48504 * 109.47212 * 30.00320 * 26 24 22 29 29 H 1.48507 * 109.46896 * 149.99709 * 26 24 22 30 30 C 1.47023 * 108.69770 * 335.55325 * 21 20 19 31 31 H 1.09005 * 109.47201 * 305.62277 * 1 2 3 32 32 H 1.09000 * 109.47493 * 65.62491 * 1 2 3 33 33 H 1.09003 * 109.47132 * 185.63297 * 1 2 3 34 34 H 1.08997 * 109.47356 * 240.00236 * 2 1 3 35 35 H 1.08998 * 109.47485 * 120.00028 * 2 1 3 36 36 H 1.08998 * 109.50769 * 290.75445 * 8 6 4 37 37 H 1.09007 * 109.50643 * 50.88903 * 8 6 4 38 38 H 1.09003 * 109.71803 * 168.37482 * 9 8 6 39 39 H 1.09000 * 109.72077 * 289.02132 * 9 8 6 40 40 H 1.08995 * 109.47457 * 269.95926 * 13 12 11 41 41 H 1.09009 * 109.46958 * 29.95450 * 13 12 11 42 42 H 1.08992 * 109.47428 * 149.94973 * 13 12 11 43 43 H 1.09002 * 109.58461 * 223.16610 * 16 15 10 44 44 H 1.09007 * 109.59043 * 102.74660 * 16 15 10 45 45 H 1.09005 * 111.00050 * 200.94340 * 19 17 3 46 46 H 1.09005 * 111.00552 * 324.78301 * 19 17 3 47 47 H 1.08999 * 110.49493 * 278.45084 * 20 19 17 48 48 H 1.09003 * 110.34387 * 156.05622 * 20 19 17 49 49 H 0.97005 * 119.99456 * 354.96060 * 25 24 22 50 50 H 1.09007 * 109.88010 * 120.70951 * 30 21 20 51 51 H 1.08999 * 109.88090 * 241.71417 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1636 2.0447 -1.1641 5 8 1.8170 1.5267 -2.2046 6 6 2.7568 3.4299 -1.1730 7 1 2.3714 3.9957 -0.3248 8 6 2.3760 4.1399 -2.4755 9 6 2.7820 5.6167 -2.3842 10 6 4.2088 5.6841 -1.8969 11 7 5.0258 6.6982 -1.9494 12 6 6.2009 6.3581 -1.4158 13 6 7.4009 7.2615 -1.2938 14 7 6.1427 5.1128 -1.0143 15 7 4.8570 4.6560 -1.3167 16 6 4.2833 3.3327 -1.0709 17 6 2.3487 2.0413 1.2655 18 1 2.7493 3.0389 1.0854 19 6 1.1062 2.1038 2.1927 20 6 1.1317 0.6938 2.8389 21 7 2.5623 0.3998 3.0404 22 6 3.0757 -0.4707 3.9642 23 1 4.1421 -0.5163 4.1290 24 6 2.2255 -1.2947 4.6890 25 7 2.5906 -1.7385 5.8732 26 14 0.5634 -1.7735 3.9839 27 1 -0.4557 -0.7756 4.3970 28 1 0.6468 -1.8113 2.5017 29 1 0.1777 -3.1145 4.4923 30 6 3.3458 1.1914 2.0806 31 1 -0.3634 0.5986 0.8354 32 1 -0.3634 0.4241 -0.9360 33 1 -0.3633 -1.0227 0.1009 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 2.8954 3.6707 -3.3111 37 1 1.2992 4.0672 -2.6283 38 1 2.7070 6.0803 -3.3679 39 1 2.1288 6.1350 -1.6821 40 1 8.0192 7.1670 -2.1864 41 1 7.0688 8.2946 -1.1896 42 1 7.9825 6.9768 -0.4171 43 1 4.5620 2.9933 -0.0733 44 1 4.6553 2.6291 -1.8157 45 1 1.2192 2.8843 2.9453 46 1 0.1940 2.2503 1.6143 47 1 0.6841 -0.0408 2.1696 48 1 0.6086 0.7056 3.7951 49 1 3.4815 -1.5507 6.2079 50 1 4.0379 1.8425 2.6148 51 1 3.8994 0.5272 1.4170 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033907096.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:15 Heat of formation + Delta-G solvation = 68.429807 kcal Electronic energy + Delta-G solvation = -32496.162282 eV Core-core repulsion = 28432.575592 eV Total energy + Delta-G solvation = -4063.586690 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.45593 -41.79249 -39.64197 -37.76086 -36.23659 -34.31014 -34.23511 -33.41584 -32.35888 -31.20457 -30.62794 -29.54324 -29.00846 -25.94580 -25.58193 -24.95311 -23.43258 -22.98435 -22.21531 -21.75796 -20.78289 -19.77397 -19.41385 -18.79887 -17.92826 -17.33260 -17.22978 -16.69975 -16.50013 -16.29944 -15.74352 -15.42759 -15.37596 -15.32037 -15.06998 -14.84217 -14.51827 -14.20168 -14.10948 -13.82797 -13.64644 -13.55330 -13.45466 -13.28252 -13.16367 -13.09771 -12.88148 -12.83892 -12.73356 -12.41271 -12.37532 -12.18315 -11.96769 -11.82207 -11.69103 -11.53250 -11.22017 -11.15128 -10.89766 -10.79305 -10.64817 -10.34545 -9.82862 -9.11947 -8.64036 -5.41206 0.53837 1.00287 1.38927 1.51041 1.52262 1.67788 1.79268 1.81785 2.53420 2.92150 3.03309 3.11501 3.14958 3.32333 3.40439 3.60863 3.68176 3.72140 3.79074 3.83704 4.01843 4.13514 4.15955 4.19645 4.32238 4.37236 4.39023 4.43222 4.48778 4.53809 4.71826 4.72611 4.76566 4.79101 4.87464 4.87703 4.89654 4.91718 4.94731 4.98405 5.05769 5.10706 5.17499 5.29167 5.34118 5.42860 5.45104 5.57883 5.75143 6.10788 6.30517 6.83593 6.97952 7.05263 7.48493 8.11957 8.86232 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.003190 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.396230 B = 8775.569487 C =10034.605918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.102 3.898 3 N -0.589 5.589 4 C 0.532 3.468 5 O -0.555 6.555 6 C -0.117 4.117 7 H 0.132 0.868 8 C -0.100 4.100 9 C -0.034 4.034 10 C 0.278 3.722 11 N -0.561 5.561 12 C 0.207 3.793 13 C -0.056 4.056 14 N -0.350 5.350 15 N -0.382 5.382 16 C 0.141 3.859 17 C 0.131 3.869 18 H 0.132 0.868 19 C -0.130 4.130 20 C 0.079 3.921 21 N -0.622 5.622 22 C -0.314 4.314 23 H 0.040 0.960 24 C -0.078 4.078 25 N -0.959 5.959 26 Si 1.099 2.901 27 H -0.272 1.272 28 H -0.253 1.253 29 H -0.314 1.314 30 C 0.123 3.877 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.111 0.889 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.105 0.895 47 H 0.056 0.944 48 H 0.040 0.960 49 H 0.247 0.753 50 H 0.037 0.963 51 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.567 18.179 -18.867 26.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.020 4.020 3 N -0.320 5.320 4 C 0.320 3.680 5 O -0.433 6.433 6 C -0.139 4.139 7 H 0.150 0.850 8 C -0.138 4.138 9 C -0.073 4.073 10 C 0.002 3.998 11 N -0.290 5.290 12 C -0.075 4.075 13 C -0.115 4.115 14 N -0.179 5.179 15 N -0.172 5.172 16 C 0.018 3.982 17 C 0.027 3.973 18 H 0.150 0.850 19 C -0.169 4.169 20 C -0.045 4.045 21 N -0.350 5.350 22 C -0.443 4.443 23 H 0.058 0.942 24 C -0.271 4.271 25 N -0.603 5.603 26 Si 0.926 3.074 27 H -0.199 1.199 28 H -0.177 1.177 29 H -0.243 1.243 30 C -0.003 4.003 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.130 0.870 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.106 0.894 43 H 0.119 0.881 44 H 0.107 0.893 45 H 0.114 0.886 46 H 0.123 0.877 47 H 0.073 0.927 48 H 0.058 0.942 49 H 0.056 0.944 50 H 0.055 0.945 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -3.546 16.875 -18.810 25.518 hybrid contribution 2.155 -0.262 0.562 2.243 sum -1.391 16.613 -18.248 24.717 Atomic orbital electron populations 1.22252 0.94601 1.02931 1.02666 1.21561 0.95698 0.82185 1.02566 1.48047 1.64061 1.13969 1.05911 1.20284 0.78135 0.86973 0.82657 1.90712 1.51134 1.69254 1.32211 1.21746 0.93190 0.94836 1.04141 0.85043 1.21560 1.04757 0.92834 0.94651 1.20653 0.83833 0.97705 1.05119 1.25122 0.98277 0.83232 0.93182 1.70217 1.02390 1.29544 1.26886 1.25158 0.96003 0.91175 0.95131 1.20233 0.90035 0.96882 1.04340 1.77937 0.98518 1.14109 1.27357 1.50151 1.09027 1.12437 1.45587 1.21700 0.91744 0.80205 1.04513 1.22297 0.95654 0.96544 0.82793 0.85007 1.23188 0.98411 0.96585 0.98716 1.22613 0.85906 0.97045 0.98896 1.44808 1.02108 1.48647 1.39477 1.19854 0.92756 1.16652 1.15000 0.94157 1.27040 1.08258 0.97288 0.94539 1.71031 1.19819 1.54063 1.15426 0.83484 0.72402 0.75212 0.76333 1.19852 1.17723 1.24321 1.21777 0.94066 0.93618 0.90871 0.91197 0.91722 0.91453 0.91135 0.90700 0.90988 0.87036 0.85637 0.85444 0.88683 0.88370 0.89385 0.88052 0.89333 0.88625 0.87664 0.92716 0.94192 0.94350 0.94453 0.95660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.05 9.09 71.98 0.65 -3.40 16 2 C 0.10 2.87 4.99 86.38 0.43 3.30 16 3 N -0.59 -13.99 2.45 -791.28 -1.94 -15.92 16 4 C 0.53 11.41 6.77 87.66 0.59 12.00 16 5 O -0.56 -15.08 15.87 -3.05 -0.05 -15.13 16 6 C -0.12 -1.77 1.67 -11.39 -0.02 -1.79 16 7 H 0.13 1.45 6.49 -2.39 -0.02 1.44 16 8 C -0.10 -1.20 4.60 30.79 0.14 -1.06 16 9 C -0.03 -0.36 6.33 30.06 0.19 -0.17 16 10 C 0.28 5.56 7.72 138.36 1.07 6.62 16 11 N -0.56 -13.31 11.18 -179.31 -2.01 -15.31 16 12 C 0.21 4.93 8.15 138.48 1.13 6.06 16 13 C -0.06 -0.85 10.51 71.24 0.75 -0.10 16 14 N -0.35 -9.45 12.74 -51.08 -0.65 -10.10 16 15 N -0.38 -8.63 4.04 -338.34 -1.37 -10.00 16 16 C 0.14 2.69 6.40 86.52 0.55 3.24 16 17 C 0.13 3.10 3.04 46.17 0.14 3.24 16 18 H 0.13 2.25 4.91 -2.39 -0.01 2.24 16 19 C -0.13 -3.21 6.15 32.06 0.20 -3.01 16 20 C 0.08 2.88 3.53 86.93 0.31 3.18 16 21 N -0.62 -27.28 2.81 -691.57 -1.94 -29.22 16 22 C -0.31 -17.43 10.45 84.04 0.88 -16.55 16 23 H 0.04 2.47 8.06 -2.91 -0.02 2.44 16 24 C -0.08 -4.48 5.42 84.86 0.46 -4.02 16 25 N -0.96 -60.79 13.70 21.65 0.30 -60.50 16 26 Si 1.10 50.91 24.69 68.60 1.69 52.60 16 27 H -0.27 -11.54 6.51 99.48 0.65 -10.89 16 28 H -0.25 -10.22 6.12 99.48 0.61 -9.61 16 29 H -0.31 -15.24 7.11 99.48 0.71 -14.54 16 30 C 0.12 4.21 6.13 86.72 0.53 4.74 16 31 H 0.07 1.63 4.73 -2.38 -0.01 1.62 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.07 2.03 7.61 -2.39 -0.02 2.01 16 35 H 0.07 2.58 5.09 -2.39 -0.01 2.57 16 36 H 0.07 1.07 8.12 -2.39 -0.02 1.06 16 37 H 0.11 1.09 8.11 -2.38 -0.02 1.07 16 38 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.10 2.00 7.21 -2.39 -0.02 1.98 16 44 H 0.09 1.80 8.12 -2.38 -0.02 1.78 16 45 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 46 H 0.11 2.04 6.80 -2.38 -0.02 2.02 16 47 H 0.06 1.95 1.68 -2.39 0.00 1.94 16 48 H 0.04 1.63 5.80 -2.39 -0.01 1.62 16 49 H 0.25 15.81 8.73 -92.70 -0.81 15.00 16 50 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 51 H 0.03 0.92 7.89 -2.39 -0.02 0.91 16 Total: -1.00 -77.67 380.80 2.81 -74.87 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.76 Total: 16.42 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 8.01 Total: 12.30 kcal Atomic # 7 Polarization: -133.45 SS G_CDS: -7.60 Total: -141.05 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.05 Total: -15.13 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 1.69 Total: 52.60 kcal Total: -77.67 2.81 -74.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033907096.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.297 kcal (2) G-P(sol) polarization free energy of solvation -77.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds