Wall clock time and date at job start Wed Apr 1 2020 05:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.46909 * 2 1 4 4 C 1.34776 * 119.99770 * 95.92076 * 3 2 1 5 5 O 1.21280 * 119.99735 * 186.84217 * 4 3 2 6 6 C 1.50701 * 120.00296 * 6.84662 * 4 3 2 7 7 H 1.08999 * 109.46432 * 53.32150 * 6 4 3 8 8 C 1.53158 * 109.47009 * 173.31868 * 6 4 3 9 9 C 1.53422 * 109.25315 * 189.18199 * 8 6 4 10 10 C 1.50928 * 108.19971 * 311.30258 * 9 8 6 11 11 N 1.30334 * 127.90297 * 195.95556 * 10 9 8 12 12 C 1.33470 * 109.72710 * 179.97438 * 11 10 9 13 13 C 1.50695 * 125.50078 * 180.02562 * 12 11 10 14 14 N 1.30977 * 109.00369 * 0.02562 * 12 11 10 15 15 N 1.34673 * 124.05485 * 15.95219 * 10 9 8 16 16 C 1.46298 * 125.04291 * 0.12148 * 15 10 9 17 17 C 1.46499 * 120.00108 * 275.92297 * 3 2 1 18 18 H 1.08998 * 110.88357 * 177.58717 * 17 3 2 19 19 C 1.55157 * 111.00493 * 53.70841 * 17 3 2 20 20 C 1.54320 * 102.94390 * 277.42813 * 19 17 3 21 21 N 1.47024 * 107.27297 * 337.80687 * 20 19 17 22 22 C 1.36932 * 125.65471 * 178.98630 * 21 20 19 23 23 H 1.08003 * 120.00252 * 179.97438 * 22 21 20 24 24 C 1.38810 * 119.99652 * 359.97427 * 22 21 20 25 25 N 1.31622 * 120.00001 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99893 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47007 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.46984 * 120.00256 * 26 24 22 29 29 H 1.48500 * 109.47117 * 239.99694 * 26 24 22 30 30 C 1.47428 * 108.69954 * 358.94132 * 21 20 19 31 31 H 1.08997 * 109.47272 * 297.28846 * 1 2 3 32 32 H 1.08996 * 109.47149 * 57.28946 * 1 2 3 33 33 H 1.09005 * 109.46878 * 177.28706 * 1 2 3 34 34 H 1.08998 * 109.47064 * 120.00024 * 2 1 3 35 35 H 1.08995 * 109.46863 * 240.00309 * 2 1 3 36 36 H 1.08998 * 109.50153 * 309.11210 * 8 6 4 37 37 H 1.08997 * 109.50478 * 69.19737 * 8 6 4 38 38 H 1.08998 * 109.72391 * 70.98548 * 9 8 6 39 39 H 1.09012 * 109.71306 * 191.58830 * 9 8 6 40 40 H 1.08998 * 109.47197 * 270.00526 * 13 12 11 41 41 H 1.09004 * 109.46801 * 29.99826 * 13 12 11 42 42 H 1.08996 * 109.47404 * 149.99982 * 13 12 11 43 43 H 1.09009 * 109.58509 * 257.24043 * 16 15 10 44 44 H 1.09000 * 109.59067 * 136.81540 * 16 15 10 45 45 H 1.08998 * 110.72086 * 35.79164 * 19 17 3 46 46 H 1.09002 * 110.72073 * 159.06504 * 19 17 3 47 47 H 1.09002 * 109.88642 * 97.21926 * 20 19 17 48 48 H 1.08996 * 109.88557 * 218.39258 * 20 19 17 49 49 H 0.96997 * 119.99513 * 179.97438 * 25 24 22 50 50 H 1.09000 * 110.36708 * 265.28681 * 30 21 20 51 51 H 1.09005 * 110.36729 * 142.96962 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3565 1.9764 1.1610 5 8 2.6415 3.1551 1.1776 6 6 2.3804 1.1773 2.4385 7 1 3.0050 0.2943 2.3029 8 6 2.9520 2.0385 3.5687 9 6 3.1890 1.1598 4.8039 10 6 1.9401 0.3497 5.0527 11 7 1.6069 -0.2958 6.1348 12 6 0.4240 -0.8886 5.9595 13 6 -0.2952 -1.7270 6.9846 14 7 -0.0109 -0.6242 4.7527 15 7 0.9588 0.1791 4.1463 16 6 0.9542 0.7440 2.7968 17 6 2.1391 2.1155 -1.2619 18 1 2.4741 3.1377 -1.0862 19 6 0.8009 2.0960 -2.0469 20 6 0.8435 0.7329 -2.7691 21 7 2.2542 0.3274 -2.8531 22 6 2.7188 -0.8357 -3.4068 23 1 3.7789 -1.0418 -3.4201 24 6 1.8272 -1.7497 -3.9512 25 7 0.5353 -1.4983 -3.9355 26 14 2.4608 -3.3367 -4.7060 27 1 3.9412 -3.3796 -4.5980 28 1 1.8784 -4.4957 -3.9830 29 1 2.0662 -3.3966 -6.1363 30 6 3.0860 1.3809 -2.2434 31 1 -0.3634 0.4711 0.9133 32 1 -0.3633 0.5553 -0.8647 33 1 -0.3633 -1.0266 -0.0486 34 1 1.8934 -0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 3.8963 2.4788 3.2486 37 1 2.2457 2.8312 3.8150 38 1 4.0311 0.4916 4.6238 39 1 3.3979 1.7898 5.6686 40 1 0.0051 -2.7692 6.8770 41 1 -0.0394 -1.3766 7.9846 42 1 -1.3713 -1.6415 6.8338 43 1 0.2908 1.6083 2.7648 44 1 0.6117 -0.0087 2.0867 45 1 -0.0475 2.1443 -1.3642 46 1 0.7644 2.9132 -2.7674 47 1 0.2788 -0.0059 -2.2004 48 1 0.4258 0.8309 -3.7711 49 1 -0.0877 -2.1369 -4.3162 50 1 3.4478 2.0685 -3.0078 51 1 3.9231 0.9383 -1.7033 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033907097.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:21 Heat of formation + Delta-G solvation = 101.079552 kcal Electronic energy + Delta-G solvation = -32637.634339 eV Core-core repulsion = 28575.463449 eV Total energy + Delta-G solvation = -4062.170891 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.51380 -40.51628 -38.09163 -36.66366 -34.86342 -33.37275 -32.60968 -31.91009 -30.73564 -29.88566 -29.32168 -28.55377 -27.04979 -24.77017 -24.40017 -23.60248 -22.88991 -21.16073 -20.65304 -20.19735 -19.63823 -18.50299 -17.54691 -17.23721 -16.86020 -16.23035 -15.80060 -15.53564 -14.86837 -14.75175 -14.68171 -14.43547 -14.07252 -13.91241 -13.72113 -13.44984 -13.15746 -12.90634 -12.76281 -12.51536 -12.44520 -12.16139 -12.06403 -12.04436 -12.00105 -11.86602 -11.49376 -11.28549 -11.15848 -11.02756 -10.95726 -10.80599 -10.38592 -10.34057 -10.18837 -10.13119 -9.97061 -9.80483 -9.76420 -9.57488 -9.38582 -8.75495 -8.37875 -6.90688 -5.83970 -3.17945 1.48747 2.02691 2.62310 2.74006 3.08736 3.31502 3.38554 3.40156 3.72927 4.02876 4.21019 4.29271 4.39288 4.54199 4.66211 4.80089 4.93449 5.01470 5.13459 5.20244 5.25043 5.31379 5.35815 5.36929 5.38220 5.42865 5.57679 5.58821 5.64440 5.66033 5.68133 5.70651 5.79227 5.83547 6.06233 6.09813 6.22553 6.22845 6.33935 6.37702 6.41289 6.49885 6.61928 6.66073 6.69350 6.94669 7.45205 7.49243 7.63505 7.72039 8.01255 8.12582 8.21742 9.09609 9.68956 10.33920 11.26825 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012908 B = 0.003231 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.690791 B = 8663.513145 C = 9809.079802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.081 3.919 3 N -0.579 5.579 4 C 0.522 3.478 5 O -0.542 6.542 6 C -0.124 4.124 7 H 0.110 0.890 8 C -0.106 4.106 9 C -0.041 4.041 10 C 0.277 3.723 11 N -0.540 5.540 12 C 0.213 3.787 13 C -0.056 4.056 14 N -0.312 5.312 15 N -0.371 5.371 16 C 0.121 3.879 17 C 0.124 3.876 18 H 0.101 0.899 19 C -0.161 4.161 20 C 0.160 3.840 21 N -0.602 5.602 22 C -0.232 4.232 23 H 0.078 0.922 24 C -0.004 4.004 25 N -0.918 5.918 26 Si 0.909 3.091 27 H -0.280 1.280 28 H -0.290 1.290 29 H -0.291 1.291 30 C 0.124 3.876 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.132 0.868 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.124 0.876 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.041 0.959 49 H 0.252 0.748 50 H 0.031 0.969 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.987 4.506 16.600 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.041 4.041 3 N -0.310 5.310 4 C 0.308 3.692 5 O -0.420 6.420 6 C -0.146 4.146 7 H 0.128 0.872 8 C -0.145 4.145 9 C -0.081 4.081 10 C 0.000 4.000 11 N -0.269 5.269 12 C -0.069 4.069 13 C -0.115 4.115 14 N -0.140 5.140 15 N -0.162 5.162 16 C -0.001 4.001 17 C 0.020 3.980 18 H 0.119 0.881 19 C -0.200 4.200 20 C 0.036 3.964 21 N -0.329 5.329 22 C -0.360 4.360 23 H 0.096 0.904 24 C -0.200 4.200 25 N -0.565 5.565 26 Si 0.740 3.260 27 H -0.206 1.206 28 H -0.217 1.217 29 H -0.218 1.218 30 C -0.003 4.003 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.149 0.851 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.142 0.858 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.059 0.941 49 H 0.063 0.937 50 H 0.049 0.951 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.521 4.665 16.383 17.042 hybrid contribution 0.273 -0.882 -0.806 1.225 sum 0.794 3.783 15.577 16.049 Atomic orbital electron populations 1.22802 0.95930 1.03370 1.02476 1.22129 0.94716 0.81860 1.05415 1.47861 1.62664 1.14637 1.05794 1.19944 0.77611 0.87270 0.84334 1.90679 1.49864 1.15302 1.86187 1.21713 0.96747 1.01007 0.95155 0.87207 1.21571 1.03909 0.97203 0.91783 1.20449 0.90824 0.96944 0.99873 1.24333 0.93498 0.96684 0.85441 1.70167 1.15101 1.16283 1.25337 1.24415 0.91347 0.98262 0.92878 1.20058 0.99077 0.97522 0.94848 1.77966 1.12879 1.13729 1.09463 1.50175 1.14911 1.37908 1.13167 1.22472 0.97210 1.00633 0.79763 1.22286 0.97493 0.95761 0.82500 0.88141 1.23362 0.96280 1.01278 0.99051 1.21582 0.86312 0.89967 0.98517 1.44571 1.01480 1.18105 1.68731 1.19066 0.92294 0.93238 1.31402 0.90434 1.24769 0.95472 0.98799 1.00999 1.69956 1.00415 1.35914 1.50205 0.86095 0.77867 0.83282 0.78804 1.20559 1.21737 1.21754 1.21919 0.93560 0.91510 0.93264 0.93687 0.89131 0.91297 0.91963 0.85051 0.88342 0.90145 0.88026 0.87455 0.89933 0.89714 0.90089 0.88999 0.85816 0.91354 0.91363 0.91372 0.94107 0.93721 0.95116 0.93829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.79 7.94 37.16 0.30 -2.49 16 2 C 0.08 1.25 4.76 -4.04 -0.02 1.23 16 3 N -0.58 -8.77 2.57 -163.67 -0.42 -9.19 16 4 C 0.52 7.39 6.99 -10.99 -0.08 7.31 16 5 O -0.54 -8.97 15.32 5.56 0.09 -8.89 16 6 C -0.12 -1.38 1.72 -91.53 -0.16 -1.54 16 7 H 0.11 1.15 7.33 -51.93 -0.38 0.77 16 8 C -0.11 -1.01 4.63 -26.43 -0.12 -1.13 16 9 C -0.04 -0.36 6.33 -27.55 -0.17 -0.53 16 10 C 0.28 3.45 7.72 -155.78 -1.20 2.25 16 11 N -0.54 -7.43 11.18 -8.03 -0.09 -7.52 16 12 C 0.21 2.83 8.15 -156.43 -1.27 1.56 16 13 C -0.06 -0.49 10.51 36.00 0.38 -0.12 16 14 N -0.31 -4.57 12.74 32.50 0.41 -4.16 16 15 N -0.37 -4.94 4.04 -58.29 -0.24 -5.18 16 16 C 0.12 1.44 5.14 -4.00 -0.02 1.42 16 17 C 0.12 2.05 3.67 -65.78 -0.24 1.81 16 18 H 0.10 1.65 7.03 -51.93 -0.36 1.29 16 19 C -0.16 -2.75 5.93 -24.90 -0.15 -2.90 16 20 C 0.16 3.43 4.07 -3.07 -0.01 3.42 16 21 N -0.60 -13.57 1.93 -170.07 -0.33 -13.90 16 22 C -0.23 -5.86 9.94 -15.06 -0.15 -6.01 16 23 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 24 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 25 N -0.92 -24.62 10.31 55.49 0.57 -24.05 16 26 Si 0.91 20.84 29.55 -169.99 -5.02 15.82 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 29 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 30 C 0.12 2.36 6.55 -2.53 -0.02 2.34 16 31 H 0.04 0.58 5.56 -51.93 -0.29 0.29 16 32 H 0.09 1.48 3.40 -51.93 -0.18 1.31 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.83 5.17 -51.93 -0.27 0.56 16 35 H 0.13 2.56 5.02 -51.93 -0.26 2.30 16 36 H 0.10 0.89 7.91 -51.93 -0.41 0.48 16 37 H 0.08 0.82 8.12 -51.93 -0.42 0.39 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.11 0.77 8.14 -51.92 -0.42 0.34 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.09 1.09 8.11 -51.92 -0.42 0.67 16 44 H 0.12 1.53 3.56 -51.93 -0.18 1.34 16 45 H 0.07 1.09 6.33 -51.93 -0.33 0.76 16 46 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.07 1.52 4.00 -51.93 -0.21 1.31 16 48 H 0.04 1.01 7.50 -51.93 -0.39 0.62 16 49 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 50 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 51 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 376.95 15.07 5.68 5.68 Total: -1.00 -30.62 376.95 -9.84 -40.46 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -7.46 Total: 4.50 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -3.04 Total: 6.42 kcal Atomic # 7 Polarization: -63.90 SS G_CDS: -0.09 Total: -63.99 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.62 -9.84 -40.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033907097.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.538 kcal (2) G-P(sol) polarization free energy of solvation -30.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds