Wall clock time and date at job start Wed Apr 1 2020 05:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.46909 * 2 1 4 4 C 1.34776 * 119.99770 * 95.92076 * 3 2 1 5 5 O 1.21280 * 119.99735 * 186.84217 * 4 3 2 6 6 C 1.50701 * 120.00296 * 6.84662 * 4 3 2 7 7 H 1.08999 * 109.46432 * 53.32150 * 6 4 3 8 8 C 1.53158 * 109.47009 * 173.31868 * 6 4 3 9 9 C 1.53422 * 109.25315 * 189.18199 * 8 6 4 10 10 C 1.50928 * 108.19971 * 311.30258 * 9 8 6 11 11 N 1.30334 * 127.90297 * 195.95556 * 10 9 8 12 12 C 1.33470 * 109.72710 * 179.97438 * 11 10 9 13 13 C 1.50695 * 125.50078 * 180.02562 * 12 11 10 14 14 N 1.30977 * 109.00369 * 0.02562 * 12 11 10 15 15 N 1.34673 * 124.05485 * 15.95219 * 10 9 8 16 16 C 1.46298 * 125.04291 * 0.12148 * 15 10 9 17 17 C 1.46499 * 120.00108 * 275.92297 * 3 2 1 18 18 H 1.08998 * 110.88357 * 177.58717 * 17 3 2 19 19 C 1.55157 * 111.00493 * 53.70841 * 17 3 2 20 20 C 1.54320 * 102.94390 * 277.42813 * 19 17 3 21 21 N 1.47024 * 107.27297 * 337.80687 * 20 19 17 22 22 C 1.36932 * 125.65471 * 178.98630 * 21 20 19 23 23 H 1.08003 * 120.00252 * 179.97438 * 22 21 20 24 24 C 1.38810 * 119.99652 * 359.97427 * 22 21 20 25 25 N 1.31622 * 120.00001 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99893 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47007 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.46984 * 120.00256 * 26 24 22 29 29 H 1.48500 * 109.47117 * 239.99694 * 26 24 22 30 30 C 1.47428 * 108.69954 * 358.94132 * 21 20 19 31 31 H 1.08997 * 109.47272 * 297.28846 * 1 2 3 32 32 H 1.08996 * 109.47149 * 57.28946 * 1 2 3 33 33 H 1.09005 * 109.46878 * 177.28706 * 1 2 3 34 34 H 1.08998 * 109.47064 * 120.00024 * 2 1 3 35 35 H 1.08995 * 109.46863 * 240.00309 * 2 1 3 36 36 H 1.08998 * 109.50153 * 309.11210 * 8 6 4 37 37 H 1.08997 * 109.50478 * 69.19737 * 8 6 4 38 38 H 1.08998 * 109.72391 * 70.98548 * 9 8 6 39 39 H 1.09012 * 109.71306 * 191.58830 * 9 8 6 40 40 H 1.08998 * 109.47197 * 270.00526 * 13 12 11 41 41 H 1.09004 * 109.46801 * 29.99826 * 13 12 11 42 42 H 1.08996 * 109.47404 * 149.99982 * 13 12 11 43 43 H 1.09009 * 109.58509 * 257.24043 * 16 15 10 44 44 H 1.09000 * 109.59067 * 136.81540 * 16 15 10 45 45 H 1.08998 * 110.72086 * 35.79164 * 19 17 3 46 46 H 1.09002 * 110.72073 * 159.06504 * 19 17 3 47 47 H 1.09002 * 109.88642 * 97.21926 * 20 19 17 48 48 H 1.08996 * 109.88557 * 218.39258 * 20 19 17 49 49 H 0.96997 * 119.99513 * 179.97438 * 25 24 22 50 50 H 1.09000 * 110.36708 * 265.28681 * 30 21 20 51 51 H 1.09005 * 110.36729 * 142.96962 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3565 1.9764 1.1610 5 8 2.6415 3.1551 1.1776 6 6 2.3804 1.1773 2.4385 7 1 3.0050 0.2943 2.3029 8 6 2.9520 2.0385 3.5687 9 6 3.1890 1.1598 4.8039 10 6 1.9401 0.3497 5.0527 11 7 1.6069 -0.2958 6.1348 12 6 0.4240 -0.8886 5.9595 13 6 -0.2952 -1.7270 6.9846 14 7 -0.0109 -0.6242 4.7527 15 7 0.9588 0.1791 4.1463 16 6 0.9542 0.7440 2.7968 17 6 2.1391 2.1155 -1.2619 18 1 2.4741 3.1377 -1.0862 19 6 0.8009 2.0960 -2.0469 20 6 0.8435 0.7329 -2.7691 21 7 2.2542 0.3274 -2.8531 22 6 2.7188 -0.8357 -3.4068 23 1 3.7789 -1.0418 -3.4201 24 6 1.8272 -1.7497 -3.9512 25 7 0.5353 -1.4983 -3.9355 26 14 2.4608 -3.3367 -4.7060 27 1 3.9412 -3.3796 -4.5980 28 1 1.8784 -4.4957 -3.9830 29 1 2.0662 -3.3966 -6.1363 30 6 3.0860 1.3809 -2.2434 31 1 -0.3634 0.4711 0.9133 32 1 -0.3633 0.5553 -0.8647 33 1 -0.3633 -1.0266 -0.0486 34 1 1.8934 -0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 3.8963 2.4788 3.2486 37 1 2.2457 2.8312 3.8150 38 1 4.0311 0.4916 4.6238 39 1 3.3979 1.7898 5.6686 40 1 0.0051 -2.7692 6.8770 41 1 -0.0394 -1.3766 7.9846 42 1 -1.3713 -1.6415 6.8338 43 1 0.2908 1.6083 2.7648 44 1 0.6117 -0.0087 2.0867 45 1 -0.0475 2.1443 -1.3642 46 1 0.7644 2.9132 -2.7674 47 1 0.2788 -0.0059 -2.2004 48 1 0.4258 0.8309 -3.7711 49 1 -0.0877 -2.1369 -4.3162 50 1 3.4478 2.0685 -3.0078 51 1 3.9231 0.9383 -1.7033 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033907097.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:19 Heat of formation + Delta-G solvation = 84.677853 kcal Electronic energy + Delta-G solvation = -32638.345570 eV Core-core repulsion = 28575.463449 eV Total energy + Delta-G solvation = -4062.882122 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.45456 -41.73243 -39.46056 -37.68854 -36.27578 -34.41024 -34.09764 -32.92910 -32.05829 -31.25058 -30.56554 -29.46431 -28.51413 -26.48009 -25.36321 -24.64884 -24.11034 -22.29626 -21.92915 -21.66218 -20.64711 -19.69699 -18.89430 -18.70332 -18.02295 -17.24172 -17.00256 -16.69485 -16.55320 -15.87727 -15.74560 -15.66352 -15.40508 -15.09083 -14.91778 -14.37986 -14.20464 -14.09591 -13.80957 -13.71508 -13.54291 -13.48152 -13.45275 -13.30892 -12.92530 -12.86920 -12.84879 -12.71537 -12.58213 -12.39449 -12.19279 -12.00502 -11.98140 -11.85203 -11.73058 -11.60797 -11.48441 -11.12311 -10.82722 -10.75928 -10.63728 -10.32248 -9.74159 -8.74888 -7.80996 -5.14428 0.54806 1.06642 1.47074 1.49762 1.51915 1.57500 1.80532 1.90786 2.51068 2.92527 3.10965 3.21382 3.38942 3.44328 3.68574 3.70730 3.80023 3.81910 3.93667 4.03250 4.05453 4.16467 4.18875 4.32310 4.37339 4.39643 4.46478 4.53950 4.63800 4.72505 4.73617 4.75923 4.84062 4.88661 4.90597 4.93500 4.95213 4.98617 5.02315 5.09456 5.26369 5.30188 5.38930 5.47252 5.52306 5.61547 5.72804 5.75545 5.88401 6.24905 6.42307 7.03270 7.06273 7.15451 7.80928 8.44903 9.28083 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012908 B = 0.003231 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.690791 B = 8663.513145 C = 9809.079802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.092 3.908 3 N -0.581 5.581 4 C 0.528 3.472 5 O -0.561 6.561 6 C -0.115 4.115 7 H 0.122 0.878 8 C -0.099 4.099 9 C -0.034 4.034 10 C 0.275 3.725 11 N -0.561 5.561 12 C 0.205 3.795 13 C -0.055 4.055 14 N -0.347 5.347 15 N -0.380 5.380 16 C 0.125 3.875 17 C 0.136 3.864 18 H 0.112 0.888 19 C -0.148 4.148 20 C 0.170 3.830 21 N -0.614 5.614 22 C -0.233 4.233 23 H 0.078 0.922 24 C -0.053 4.053 25 N -0.941 5.941 26 Si 0.965 3.035 27 H -0.270 1.270 28 H -0.294 1.294 29 H -0.299 1.299 30 C 0.123 3.877 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.074 0.926 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.117 0.883 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.057 0.943 48 H -0.002 1.002 49 H 0.245 0.755 50 H 0.035 0.965 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.193 5.032 18.631 19.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.031 4.031 3 N -0.311 5.311 4 C 0.316 3.684 5 O -0.440 6.440 6 C -0.137 4.137 7 H 0.140 0.860 8 C -0.137 4.137 9 C -0.074 4.074 10 C -0.001 4.001 11 N -0.290 5.290 12 C -0.076 4.076 13 C -0.114 4.114 14 N -0.176 5.176 15 N -0.171 5.171 16 C 0.003 3.997 17 C 0.031 3.969 18 H 0.129 0.871 19 C -0.187 4.187 20 C 0.046 3.954 21 N -0.341 5.341 22 C -0.362 4.362 23 H 0.096 0.904 24 C -0.247 4.247 25 N -0.589 5.589 26 Si 0.795 3.205 27 H -0.195 1.195 28 H -0.221 1.221 29 H -0.227 1.227 30 C -0.003 4.003 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.127 0.873 37 H 0.093 0.907 38 H 0.140 0.860 39 H 0.146 0.854 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.135 0.865 45 H 0.101 0.899 46 H 0.097 0.903 47 H 0.075 0.925 48 H 0.016 0.984 49 H 0.054 0.946 50 H 0.052 0.948 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.752 5.210 18.432 19.234 hybrid contribution -0.063 -1.009 -1.404 1.730 sum 1.689 4.201 17.028 17.620 Atomic orbital electron populations 1.22685 0.95608 1.02797 1.02687 1.21911 0.94867 0.81796 1.04523 1.47846 1.63047 1.14451 1.05805 1.20310 0.76390 0.87081 0.84613 1.90677 1.50527 1.16297 1.86516 1.21676 0.96686 1.01295 0.94058 0.86028 1.21542 1.04042 0.96809 0.91335 1.20626 0.89662 0.96950 1.00122 1.25067 0.94048 0.96112 0.84906 1.70211 1.15571 1.17185 1.26075 1.25189 0.91366 0.97944 0.93133 1.20232 0.99251 0.97530 0.94378 1.77914 1.14171 1.15121 1.10399 1.50210 1.15113 1.38203 1.13534 1.22398 0.97593 1.00324 0.79376 1.22089 0.96135 0.95961 0.82675 0.87058 1.23228 0.97332 0.98893 0.99197 1.21367 0.85566 0.92082 0.96430 1.44714 1.02515 1.18197 1.68645 1.19314 0.92317 0.94124 1.30455 0.90446 1.25395 0.95751 1.01380 1.02193 1.70136 1.01126 1.36388 1.51293 0.85208 0.77788 0.80216 0.77282 1.19489 1.22093 1.22653 1.22025 0.93720 0.90804 0.93736 0.91575 0.90828 0.92132 0.89762 0.88918 0.87350 0.90717 0.86013 0.85444 0.88737 0.88400 0.89198 0.89039 0.86484 0.89917 0.90316 0.92498 0.98389 0.94557 0.94772 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.27 7.94 71.98 0.57 -4.70 16 2 C 0.09 2.74 4.76 86.38 0.41 3.16 16 3 N -0.58 -16.68 2.57 -790.14 -2.03 -18.71 16 4 C 0.53 13.72 6.99 87.66 0.61 14.33 16 5 O -0.56 -17.15 15.32 -3.03 -0.05 -17.19 16 6 C -0.11 -2.27 1.72 -11.39 -0.02 -2.29 16 7 H 0.12 2.18 7.33 -2.39 -0.02 2.16 16 8 C -0.10 -1.58 4.63 30.79 0.14 -1.44 16 9 C -0.03 -0.48 6.33 30.06 0.19 -0.29 16 10 C 0.27 6.24 7.72 138.37 1.07 7.31 16 11 N -0.56 -14.44 11.18 -179.31 -2.01 -16.44 16 12 C 0.21 5.19 8.15 138.48 1.13 6.32 16 13 C -0.05 -0.88 10.51 71.23 0.75 -0.13 16 14 N -0.35 -9.85 12.74 -51.08 -0.65 -10.50 16 15 N -0.38 -9.52 4.04 -338.33 -1.37 -10.88 16 16 C 0.12 2.74 5.14 86.52 0.44 3.18 16 17 C 0.14 4.33 3.67 46.38 0.17 4.50 16 18 H 0.11 3.40 7.03 -2.39 -0.02 3.39 16 19 C -0.15 -4.96 5.93 31.78 0.19 -4.77 16 20 C 0.17 7.43 4.07 86.73 0.35 7.79 16 21 N -0.61 -28.00 1.93 -691.98 -1.34 -29.33 16 22 C -0.23 -11.91 9.94 84.03 0.84 -11.07 16 23 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 24 C -0.05 -2.80 5.49 84.86 0.47 -2.34 16 25 N -0.94 -52.03 10.31 21.65 0.22 -51.81 16 26 Si 0.96 43.45 29.55 68.60 2.03 45.48 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 28 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 29 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 30 C 0.12 4.59 6.55 86.85 0.57 5.16 16 31 H 0.07 1.63 5.56 -2.39 -0.01 1.62 16 32 H 0.07 2.41 3.40 -2.39 -0.01 2.41 16 33 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.08 2.13 5.17 -2.39 -0.01 2.12 16 35 H 0.09 3.63 5.02 -2.39 -0.01 3.62 16 36 H 0.11 1.59 7.91 -2.39 -0.02 1.57 16 37 H 0.07 1.31 8.12 -2.39 -0.02 1.29 16 38 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.13 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.09 2.01 8.11 -2.38 -0.02 1.99 16 44 H 0.12 2.71 3.56 -2.39 -0.01 2.70 16 45 H 0.08 2.55 6.33 -2.39 -0.02 2.54 16 46 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.06 2.62 4.00 -2.39 -0.01 2.62 16 48 H 0.00 -0.11 7.50 -2.39 -0.02 -0.13 16 49 H 0.24 13.41 8.31 -92.71 -0.77 12.64 16 50 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 51 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -66.93 376.95 3.66 -63.27 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.96 Total: 21.41 kcal Atomic # 6 Polarization: 16.82 SS G_CDS: 7.88 Total: 24.70 kcal Atomic # 7 Polarization: -130.51 SS G_CDS: -7.16 Total: -137.67 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.05 Total: -17.19 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -66.93 3.66 -63.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033907097.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.952 kcal (2) G-P(sol) polarization free energy of solvation -66.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds