Wall clock time and date at job start Wed Apr 1 2020 05:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47605 * 2 1 4 4 C 1.34777 * 119.99620 * 83.75430 * 3 2 1 5 5 O 1.21280 * 120.00375 * 5.80489 * 4 3 2 6 6 C 1.50706 * 119.99850 * 185.52602 * 4 3 2 7 7 H 1.09000 * 107.87860 * 45.20560 * 6 4 3 8 8 C 1.50954 * 108.02799 * 288.65440 * 6 4 3 9 9 C 1.53698 * 110.94686 * 165.67546 * 8 6 4 10 10 C 1.51890 * 106.86710 * 79.13727 * 9 8 6 11 11 N 1.29893 * 127.80379 * 114.67924 * 10 9 8 12 12 N 1.29029 * 109.22097 * 180.38476 * 11 10 9 13 13 C 1.30974 * 109.71102 * 359.92954 * 12 11 10 14 14 N 1.34598 * 124.57352 * 294.90428 * 10 9 8 15 15 C 1.47497 * 125.03705 * 359.47659 * 14 10 9 16 16 C 1.50857 * 108.02757 * 161.75555 * 6 4 3 17 17 C 1.46503 * 120.00401 * 263.76258 * 3 2 1 18 18 H 1.08994 * 110.88774 * 177.92573 * 17 3 2 19 19 C 1.55156 * 111.00314 * 301.81129 * 17 3 2 20 20 C 1.54320 * 102.94450 * 153.57464 * 19 17 3 21 21 N 1.47029 * 107.26833 * 337.80373 * 20 19 17 22 22 C 1.36939 * 125.64256 * 178.95861 * 21 20 19 23 23 H 1.08009 * 119.99519 * 179.97438 * 22 21 20 24 24 C 1.38805 * 120.00418 * 359.97438 * 22 21 20 25 25 N 1.31614 * 120.00208 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99865 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47150 * 59.99810 * 26 24 22 28 28 H 1.48505 * 109.46846 * 179.97438 * 26 24 22 29 29 H 1.48491 * 109.47288 * 299.99563 * 26 24 22 30 30 C 1.47424 * 108.70578 * 358.94386 * 21 20 19 31 31 H 1.08997 * 109.47290 * 65.05789 * 1 2 3 32 32 H 1.09001 * 109.47460 * 185.06771 * 1 2 3 33 33 H 1.09000 * 109.46692 * 305.06022 * 1 2 3 34 34 H 1.09007 * 109.47064 * 240.00404 * 2 1 3 35 35 H 1.09003 * 109.47360 * 120.00362 * 2 1 3 36 36 H 1.08998 * 109.18152 * 286.09087 * 8 6 4 37 37 H 1.08995 * 109.18383 * 45.32843 * 8 6 4 38 38 H 1.08993 * 109.98725 * 319.79985 * 9 8 6 39 39 H 1.08992 * 110.05081 * 198.51090 * 9 8 6 40 40 H 1.07998 * 126.61381 * 179.89693 * 13 12 11 41 41 H 1.09003 * 109.92900 * 306.57568 * 15 14 10 42 42 H 1.08992 * 110.00516 * 185.40001 * 15 14 10 43 43 H 1.09003 * 109.14654 * 314.86061 * 16 6 4 44 44 H 1.08996 * 109.15380 * 74.01339 * 16 6 4 45 45 H 1.09001 * 110.71735 * 271.93627 * 19 17 3 46 46 H 1.08998 * 110.71861 * 35.02807 * 19 17 3 47 47 H 1.08998 * 109.88107 * 97.21925 * 20 19 17 48 48 H 1.09001 * 109.88354 * 218.23802 * 20 19 17 49 49 H 0.96994 * 120.00302 * 180.02562 * 25 24 22 50 50 H 1.09000 * 110.36567 * 265.28844 * 30 21 20 51 51 H 1.08992 * 110.37147 * 142.96504 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1233 2.0588 1.1603 5 8 1.9148 1.4943 2.2133 6 6 2.5060 3.5164 1.1497 7 1 1.9215 4.0102 0.3733 8 6 3.9638 3.6140 0.7703 9 6 4.3380 5.0562 0.3930 10 6 4.5238 5.8180 1.6938 11 7 5.6174 6.3399 2.1617 12 7 5.3695 6.8972 3.2987 13 6 4.1024 6.7504 3.5957 14 7 3.5423 6.0651 2.5811 15 6 2.1362 5.6471 2.4268 16 6 2.1136 4.1118 2.4792 17 6 2.3926 2.0259 -1.2612 18 1 2.6990 3.0584 -1.0939 19 6 3.5069 1.2255 -1.9857 20 6 3.2866 1.5911 -3.4687 21 7 1.8936 2.0415 -3.6049 22 6 1.3047 2.4750 -4.7627 23 1 0.2703 2.7858 -4.7588 24 6 2.0370 2.5150 -5.9412 25 7 3.2976 2.1367 -5.9458 26 14 1.2333 3.1057 -7.5206 27 1 0.7617 4.5027 -7.3436 28 1 2.2213 3.0538 -8.6282 29 1 0.0783 2.2309 -7.8456 30 6 1.2359 1.9487 -2.2888 31 1 -0.3634 0.4334 -0.9318 32 1 -0.3634 -1.0236 0.0908 33 1 -0.3633 0.5903 0.8412 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8900 36 1 4.5755 3.2937 1.6137 37 1 4.1571 2.9602 -0.0800 38 1 3.5369 5.5081 -0.1918 39 1 5.2659 5.0641 -0.1787 40 1 3.6032 7.1094 4.4836 41 1 1.7493 5.9919 1.4679 42 1 1.5345 6.0555 3.2386 43 1 1.1089 3.7777 2.7380 44 1 2.8111 3.7699 3.2439 45 1 4.4930 1.5481 -1.6514 46 1 3.3784 0.1549 -1.8264 47 1 3.9655 2.3934 -3.7575 48 1 3.4586 0.7162 -4.0957 49 1 3.8095 2.1650 -6.7692 50 1 0.7076 1.0000 -2.1947 51 1 0.5479 2.7824 -2.1488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033907582.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:53 Heat of formation + Delta-G solvation = 79.265526 kcal Electronic energy + Delta-G solvation = -32526.924791 eV Core-core repulsion = 28463.807973 eV Total energy + Delta-G solvation = -4063.116818 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.43765 -40.68325 -37.92105 -37.11353 -35.03433 -34.55148 -32.45692 -32.19967 -30.94494 -29.89919 -29.21192 -27.45023 -27.12246 -24.72865 -24.50221 -23.58136 -22.58294 -21.49987 -20.72701 -20.45812 -20.24588 -18.73134 -18.01589 -17.36522 -17.00150 -16.16886 -16.03365 -15.42219 -15.28013 -15.01704 -14.75202 -14.63995 -14.35100 -14.01344 -13.70684 -13.56039 -13.21278 -13.03623 -12.77335 -12.58462 -12.48537 -12.43981 -12.24474 -12.05063 -11.89728 -11.74052 -11.51359 -11.22500 -11.12517 -11.06921 -10.99487 -10.89846 -10.76610 -10.48904 -10.40360 -10.34000 -10.21201 -10.05606 -9.83113 -9.62220 -9.28390 -8.72850 -8.50886 -6.96963 -5.82644 -3.17568 1.72651 2.29456 2.56224 2.78423 2.95451 3.33357 3.38419 3.39659 3.96542 4.06849 4.15829 4.25874 4.40889 4.45639 4.57261 4.71967 4.77301 4.91061 4.99542 5.08208 5.09487 5.17384 5.19022 5.25547 5.35585 5.41972 5.45791 5.48868 5.50850 5.55293 5.59985 5.68151 5.78201 5.79371 5.84712 5.88794 5.96063 6.02634 6.05040 6.14498 6.25034 6.32027 6.41106 6.61719 6.68496 6.69563 7.42465 7.44808 7.47961 7.70023 8.11626 8.15959 8.62123 9.09339 9.69339 10.32932 11.28531 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011045 B = 0.003370 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.436983 B = 8305.807064 C = 9883.520390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.111 3.889 3 N -0.594 5.594 4 C 0.519 3.481 5 O -0.548 6.548 6 C -0.110 4.110 7 H 0.097 0.903 8 C -0.119 4.119 9 C -0.031 4.031 10 C 0.182 3.818 11 N -0.295 5.295 12 N -0.305 5.305 13 C 0.145 3.855 14 N -0.469 5.469 15 C 0.105 3.895 16 C -0.115 4.115 17 C 0.108 3.892 18 H 0.104 0.896 19 C -0.155 4.155 20 C 0.179 3.821 21 N -0.602 5.602 22 C -0.234 4.234 23 H 0.077 0.923 24 C -0.003 4.003 25 N -0.920 5.920 26 Si 0.912 3.088 27 H -0.285 1.285 28 H -0.289 1.289 29 H -0.285 1.285 30 C 0.127 3.873 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.217 0.783 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.051 0.949 48 H 0.046 0.954 49 H 0.254 0.746 50 H 0.031 0.969 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.049 3.117 16.074 16.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.012 4.012 3 N -0.325 5.325 4 C 0.306 3.694 5 O -0.426 6.426 6 C -0.132 4.132 7 H 0.115 0.885 8 C -0.158 4.158 9 C -0.071 4.071 10 C -0.086 4.086 11 N -0.135 5.135 12 N -0.145 5.145 13 C -0.142 4.142 14 N -0.160 5.160 15 C -0.018 4.018 16 C -0.154 4.154 17 C 0.004 3.996 18 H 0.122 0.878 19 C -0.195 4.195 20 C 0.054 3.946 21 N -0.329 5.329 22 C -0.362 4.362 23 H 0.095 0.905 24 C -0.200 4.200 25 N -0.567 5.567 26 Si 0.742 3.258 27 H -0.211 1.211 28 H -0.215 1.215 29 H -0.212 1.212 30 C 0.000 4.000 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.129 0.871 40 H 0.233 0.767 41 H 0.118 0.882 42 H 0.125 0.875 43 H 0.114 0.886 44 H 0.099 0.901 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.069 0.931 48 H 0.064 0.936 49 H 0.065 0.935 50 H 0.048 0.952 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.648 3.252 16.514 17.038 hybrid contribution -1.868 -0.064 -0.959 2.101 sum -4.516 3.189 15.555 16.508 Atomic orbital electron populations 1.22252 0.95852 1.02032 1.02610 1.21377 0.94449 0.82395 1.02946 1.47996 1.63904 1.13968 1.06617 1.20504 0.76780 0.88672 0.83407 1.90669 1.51192 1.70125 1.30629 1.20710 0.98649 0.94202 0.99599 0.88478 1.21503 0.93769 0.96810 1.03702 1.20583 1.05044 0.92369 0.89109 1.24916 0.85208 1.02126 0.96392 1.74251 1.21965 1.12481 1.04818 1.74521 1.12219 1.19147 1.08584 1.26302 0.92292 0.99824 0.95809 1.46335 1.11141 1.41546 1.16995 1.22520 0.78230 0.95988 1.05018 1.21469 1.04558 0.92105 0.97240 1.22772 0.97298 0.97125 0.82436 0.87827 1.23312 0.97191 0.99641 0.99312 1.21151 0.86268 0.99202 0.87974 1.44365 1.08339 1.76894 1.03306 1.18966 0.95206 1.37058 0.84938 0.90481 1.24787 0.96084 1.01294 0.97837 1.69919 1.07367 1.52754 1.26622 0.86213 0.78108 0.78570 0.82920 1.21111 1.21523 1.21153 1.21912 0.93284 0.98884 0.85946 0.91481 0.91948 0.92691 0.89823 0.90572 0.90707 0.88449 0.88833 0.87081 0.76680 0.88187 0.87495 0.88604 0.90065 0.91692 0.91747 0.93126 0.93631 0.93534 0.95172 0.94229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 9.95 37.16 0.37 -1.63 16 2 C 0.11 1.40 5.18 -4.04 -0.02 1.38 16 3 N -0.59 -7.69 2.53 -163.67 -0.41 -8.10 16 4 C 0.52 6.63 6.64 -10.98 -0.07 6.55 16 5 O -0.55 -8.50 15.56 5.56 0.09 -8.41 16 6 C -0.11 -1.07 1.28 -93.87 -0.12 -1.19 16 7 H 0.10 0.85 6.66 -51.93 -0.35 0.51 16 8 C -0.12 -1.20 4.23 -27.40 -0.12 -1.32 16 9 C -0.03 -0.31 6.02 -26.93 -0.16 -0.47 16 10 C 0.18 2.15 7.02 -155.74 -1.09 1.06 16 11 N -0.30 -4.45 12.23 32.85 0.40 -4.05 16 12 N -0.31 -4.35 12.24 29.60 0.36 -3.99 16 13 C 0.15 1.44 12.83 -90.34 -1.16 0.28 16 14 N -0.47 -4.40 2.72 -114.24 -0.31 -4.71 16 15 C 0.10 0.64 6.53 -3.17 -0.02 0.62 16 16 C -0.12 -0.95 4.36 -27.48 -0.12 -1.07 16 17 C 0.11 1.53 2.23 -65.78 -0.15 1.38 16 18 H 0.10 1.35 4.57 -51.93 -0.24 1.11 16 19 C -0.16 -2.45 6.33 -24.90 -0.16 -2.61 16 20 C 0.18 3.84 5.37 -3.06 -0.02 3.82 16 21 N -0.60 -13.65 3.39 -170.07 -0.58 -14.23 16 22 C -0.23 -5.99 10.28 -15.06 -0.15 -6.14 16 23 H 0.08 1.91 7.83 -52.48 -0.41 1.50 16 24 C 0.00 -0.08 5.49 -17.44 -0.10 -0.18 16 25 N -0.92 -25.25 10.31 55.49 0.57 -24.68 16 26 Si 0.91 20.88 29.55 -169.99 -5.02 15.86 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 29 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 30 C 0.13 2.23 6.52 -2.53 -0.02 2.22 16 31 H 0.07 0.85 5.92 -51.93 -0.31 0.54 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.07 6.31 -51.93 -0.33 0.74 16 35 H 0.08 0.98 7.54 -51.93 -0.39 0.59 16 36 H 0.07 0.85 7.91 -51.93 -0.41 0.44 16 37 H 0.10 1.04 4.81 -51.93 -0.25 0.79 16 38 H 0.09 0.79 7.89 -51.93 -0.41 0.38 16 39 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.22 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.10 0.52 7.87 -51.93 -0.41 0.11 16 42 H 0.11 0.36 8.13 -51.93 -0.42 -0.06 16 43 H 0.10 0.77 7.76 -51.93 -0.40 0.37 16 44 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 45 H 0.06 0.92 7.42 -51.93 -0.39 0.53 16 46 H 0.06 0.99 6.35 -51.93 -0.33 0.66 16 47 H 0.05 1.21 7.38 -51.93 -0.38 0.82 16 48 H 0.05 1.11 7.51 -51.93 -0.39 0.73 16 49 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 50 H 0.03 0.54 5.09 -51.93 -0.26 0.28 16 51 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 384.10 15.07 5.79 5.79 Total: -1.00 -33.21 384.10 -9.96 -43.17 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.75 Total: 0.66 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -3.10 Total: 2.70 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 0.03 Total: -59.77 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.21 -9.96 -43.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033907582.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.437 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds