Wall clock time and date at job start Wed Apr 1 2020 05:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47605 * 2 1 4 4 C 1.34777 * 119.99620 * 83.75430 * 3 2 1 5 5 O 1.21280 * 120.00375 * 5.80489 * 4 3 2 6 6 C 1.50706 * 119.99850 * 185.52602 * 4 3 2 7 7 H 1.09000 * 107.87860 * 45.20560 * 6 4 3 8 8 C 1.50954 * 108.02799 * 288.65440 * 6 4 3 9 9 C 1.53698 * 110.94686 * 165.67546 * 8 6 4 10 10 C 1.51890 * 106.86710 * 79.13727 * 9 8 6 11 11 N 1.29893 * 127.80379 * 114.67924 * 10 9 8 12 12 N 1.29029 * 109.22097 * 180.38476 * 11 10 9 13 13 C 1.30974 * 109.71102 * 359.92954 * 12 11 10 14 14 N 1.34598 * 124.57352 * 294.90428 * 10 9 8 15 15 C 1.47497 * 125.03705 * 359.47659 * 14 10 9 16 16 C 1.50857 * 108.02757 * 161.75555 * 6 4 3 17 17 C 1.46503 * 120.00401 * 263.76258 * 3 2 1 18 18 H 1.08994 * 110.88774 * 177.92573 * 17 3 2 19 19 C 1.55156 * 111.00314 * 301.81129 * 17 3 2 20 20 C 1.54320 * 102.94450 * 153.57464 * 19 17 3 21 21 N 1.47029 * 107.26833 * 337.80373 * 20 19 17 22 22 C 1.36939 * 125.64256 * 178.95861 * 21 20 19 23 23 H 1.08009 * 119.99519 * 179.97438 * 22 21 20 24 24 C 1.38805 * 120.00418 * 359.97438 * 22 21 20 25 25 N 1.31614 * 120.00208 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99865 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47150 * 59.99810 * 26 24 22 28 28 H 1.48505 * 109.46846 * 179.97438 * 26 24 22 29 29 H 1.48491 * 109.47288 * 299.99563 * 26 24 22 30 30 C 1.47424 * 108.70578 * 358.94386 * 21 20 19 31 31 H 1.08997 * 109.47290 * 65.05789 * 1 2 3 32 32 H 1.09001 * 109.47460 * 185.06771 * 1 2 3 33 33 H 1.09000 * 109.46692 * 305.06022 * 1 2 3 34 34 H 1.09007 * 109.47064 * 240.00404 * 2 1 3 35 35 H 1.09003 * 109.47360 * 120.00362 * 2 1 3 36 36 H 1.08998 * 109.18152 * 286.09087 * 8 6 4 37 37 H 1.08995 * 109.18383 * 45.32843 * 8 6 4 38 38 H 1.08993 * 109.98725 * 319.79985 * 9 8 6 39 39 H 1.08992 * 110.05081 * 198.51090 * 9 8 6 40 40 H 1.07998 * 126.61381 * 179.89693 * 13 12 11 41 41 H 1.09003 * 109.92900 * 306.57568 * 15 14 10 42 42 H 1.08992 * 110.00516 * 185.40001 * 15 14 10 43 43 H 1.09003 * 109.14654 * 314.86061 * 16 6 4 44 44 H 1.08996 * 109.15380 * 74.01339 * 16 6 4 45 45 H 1.09001 * 110.71735 * 271.93627 * 19 17 3 46 46 H 1.08998 * 110.71861 * 35.02807 * 19 17 3 47 47 H 1.08998 * 109.88107 * 97.21925 * 20 19 17 48 48 H 1.09001 * 109.88354 * 218.23802 * 20 19 17 49 49 H 0.96994 * 120.00302 * 180.02562 * 25 24 22 50 50 H 1.09000 * 110.36567 * 265.28844 * 30 21 20 51 51 H 1.08992 * 110.37147 * 142.96504 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1233 2.0588 1.1603 5 8 1.9148 1.4943 2.2133 6 6 2.5060 3.5164 1.1497 7 1 1.9215 4.0102 0.3733 8 6 3.9638 3.6140 0.7703 9 6 4.3380 5.0562 0.3930 10 6 4.5238 5.8180 1.6938 11 7 5.6174 6.3399 2.1617 12 7 5.3695 6.8972 3.2987 13 6 4.1024 6.7504 3.5957 14 7 3.5423 6.0651 2.5811 15 6 2.1362 5.6471 2.4268 16 6 2.1136 4.1118 2.4792 17 6 2.3926 2.0259 -1.2612 18 1 2.6990 3.0584 -1.0939 19 6 3.5069 1.2255 -1.9857 20 6 3.2866 1.5911 -3.4687 21 7 1.8936 2.0415 -3.6049 22 6 1.3047 2.4750 -4.7627 23 1 0.2703 2.7858 -4.7588 24 6 2.0370 2.5150 -5.9412 25 7 3.2976 2.1367 -5.9458 26 14 1.2333 3.1057 -7.5206 27 1 0.7617 4.5027 -7.3436 28 1 2.2213 3.0538 -8.6282 29 1 0.0783 2.2309 -7.8456 30 6 1.2359 1.9487 -2.2888 31 1 -0.3634 0.4334 -0.9318 32 1 -0.3634 -1.0236 0.0908 33 1 -0.3633 0.5903 0.8412 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8900 36 1 4.5755 3.2937 1.6137 37 1 4.1571 2.9602 -0.0800 38 1 3.5369 5.5081 -0.1918 39 1 5.2659 5.0641 -0.1787 40 1 3.6032 7.1094 4.4836 41 1 1.7493 5.9919 1.4679 42 1 1.5345 6.0555 3.2386 43 1 1.1089 3.7777 2.7380 44 1 2.8111 3.7699 3.2439 45 1 4.4930 1.5481 -1.6514 46 1 3.3784 0.1549 -1.8264 47 1 3.9655 2.3934 -3.7575 48 1 3.4586 0.7162 -4.0957 49 1 3.8095 2.1650 -6.7692 50 1 0.7076 1.0000 -2.1947 51 1 0.5479 2.7824 -2.1488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033907582.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:52 Heat of formation + Delta-G solvation = 60.924728 kcal Electronic energy + Delta-G solvation = -32527.720108 eV Core-core repulsion = 28463.807973 eV Total energy + Delta-G solvation = -4063.912134 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.24600 -41.73037 -39.22554 -38.01488 -36.40525 -35.32565 -34.00255 -33.18703 -32.02426 -30.87417 -30.66137 -28.89460 -27.95931 -26.34445 -25.39787 -24.55071 -23.38360 -22.57212 -21.96858 -21.75515 -21.20197 -19.83081 -18.89357 -18.78655 -18.14434 -17.17852 -16.96850 -16.65892 -16.39946 -16.08196 -15.83883 -15.81095 -15.46072 -15.13024 -14.75639 -14.62177 -14.41704 -14.07082 -13.90539 -13.78039 -13.68732 -13.41714 -13.30589 -13.12596 -12.98851 -12.86708 -12.66553 -12.58193 -12.40372 -12.28507 -12.07679 -12.00264 -11.94271 -11.90240 -11.84321 -11.66488 -11.44828 -11.30369 -11.10843 -10.68850 -10.64494 -10.17872 -9.67276 -8.83422 -7.80149 -5.15182 0.96795 1.51282 1.52382 1.54523 1.58802 1.64602 1.89273 1.92503 2.54192 3.18041 3.21808 3.39360 3.49458 3.61969 3.73327 3.83584 3.85500 3.90855 3.92753 4.02481 4.10971 4.17133 4.23790 4.27225 4.39030 4.41028 4.42699 4.47466 4.51232 4.61644 4.67391 4.71035 4.86035 4.88472 4.89786 4.94186 4.99923 5.01464 5.07680 5.10863 5.14708 5.17407 5.28811 5.40266 5.51330 5.57324 5.68846 5.82566 6.01559 6.23386 6.41242 7.11294 7.15285 7.77327 7.82248 8.44570 9.29218 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011045 B = 0.003370 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.436983 B = 8305.807064 C = 9883.520390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.107 3.893 3 N -0.592 5.592 4 C 0.520 3.480 5 O -0.573 6.573 6 C -0.106 4.106 7 H 0.116 0.884 8 C -0.110 4.110 9 C -0.027 4.027 10 C 0.178 3.822 11 N -0.346 5.346 12 N -0.359 5.359 13 C 0.163 3.837 14 N -0.466 5.466 15 C 0.106 3.894 16 C -0.109 4.109 17 C 0.131 3.869 18 H 0.122 0.878 19 C -0.142 4.142 20 C 0.189 3.811 21 N -0.621 5.621 22 C -0.238 4.238 23 H 0.084 0.916 24 C -0.060 4.060 25 N -0.948 5.948 26 Si 0.970 3.030 27 H -0.276 1.276 28 H -0.299 1.299 29 H -0.281 1.281 30 C 0.124 3.876 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.260 0.740 41 H 0.118 0.882 42 H 0.144 0.856 43 H 0.103 0.897 44 H 0.060 0.940 45 H 0.085 0.915 46 H 0.070 0.930 47 H 0.021 0.979 48 H 0.005 0.995 49 H 0.246 0.754 50 H 0.035 0.965 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.342 4.107 17.535 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.015 4.015 3 N -0.323 5.323 4 C 0.309 3.691 5 O -0.453 6.453 6 C -0.127 4.127 7 H 0.134 0.866 8 C -0.148 4.148 9 C -0.067 4.067 10 C -0.092 4.092 11 N -0.185 5.185 12 N -0.197 5.197 13 C -0.126 4.126 14 N -0.156 5.156 15 C -0.015 4.015 16 C -0.147 4.147 17 C 0.026 3.974 18 H 0.140 0.860 19 C -0.181 4.181 20 C 0.063 3.937 21 N -0.348 5.348 22 C -0.367 4.367 23 H 0.101 0.899 24 C -0.253 4.253 25 N -0.597 5.597 26 Si 0.799 3.201 27 H -0.202 1.202 28 H -0.226 1.226 29 H -0.207 1.207 30 C -0.002 4.002 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.132 0.868 39 H 0.124 0.876 40 H 0.276 0.724 41 H 0.136 0.864 42 H 0.162 0.838 43 H 0.121 0.879 44 H 0.079 0.921 45 H 0.104 0.896 46 H 0.089 0.911 47 H 0.039 0.961 48 H 0.023 0.977 49 H 0.055 0.945 50 H 0.052 0.948 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.974 4.239 18.009 19.159 hybrid contribution -1.230 -0.449 -1.338 1.872 sum -6.204 3.790 16.672 18.188 Atomic orbital electron populations 1.22166 0.95032 1.02880 1.01841 1.21436 0.95100 0.82274 1.02727 1.47969 1.63950 1.14114 1.06225 1.20998 0.75808 0.89689 0.82610 1.90665 1.52248 1.70975 1.31386 1.20790 0.98368 0.92188 1.01375 0.86585 1.21373 0.93818 0.96878 1.02752 1.20624 1.05586 0.91889 0.88579 1.25137 0.85297 1.01685 0.97071 1.74136 1.24126 1.14314 1.05925 1.74408 1.14884 1.21282 1.09135 1.27114 0.91262 0.97823 0.96400 1.46525 1.12003 1.40917 1.16158 1.22830 0.76702 0.94260 1.07667 1.21406 1.04205 0.93677 0.95434 1.22471 0.94940 0.97858 0.82120 0.86000 1.23139 0.99006 1.00411 0.95559 1.20854 0.85511 0.96377 0.90934 1.44603 1.09093 1.76587 1.04508 1.19351 0.95546 1.35694 0.86110 0.89863 1.25519 0.96681 1.02425 1.00684 1.70133 1.08544 1.54453 1.26530 0.85277 0.76985 0.78440 0.79365 1.20169 1.22550 1.20704 1.22071 0.94301 0.99298 0.84504 0.92314 0.90478 0.93086 0.90068 0.90742 0.92365 0.88976 0.86819 0.87584 0.72382 0.86390 0.83815 0.87903 0.92130 0.89645 0.91093 0.96112 0.97690 0.94507 0.94787 0.93262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 9.95 71.98 0.72 -2.77 16 2 C 0.11 2.51 5.18 86.38 0.45 2.96 16 3 N -0.59 -14.03 2.53 -790.11 -2.00 -16.02 16 4 C 0.52 12.05 6.64 87.66 0.58 12.64 16 5 O -0.57 -16.67 15.56 -3.03 -0.05 -16.72 16 6 C -0.11 -1.76 1.28 -12.90 -0.02 -1.78 16 7 H 0.12 1.54 6.66 -2.39 -0.02 1.53 16 8 C -0.11 -2.01 4.23 30.16 0.13 -1.88 16 9 C -0.03 -0.49 6.02 30.46 0.18 -0.30 16 10 C 0.18 3.98 7.02 138.83 0.98 4.95 16 11 N -0.35 -10.43 12.23 -50.00 -0.61 -11.05 16 12 N -0.36 -10.05 12.24 -60.28 -0.74 -10.78 16 13 C 0.16 2.83 12.83 180.25 2.31 5.15 16 14 N -0.47 -7.46 2.72 -515.34 -1.40 -8.86 16 15 C 0.11 0.84 6.53 86.40 0.56 1.40 16 16 C -0.11 -1.44 4.36 30.11 0.13 -1.31 16 17 C 0.13 3.43 2.23 46.38 0.10 3.54 16 18 H 0.12 2.81 4.57 -2.39 -0.01 2.80 16 19 C -0.14 -4.34 6.33 31.78 0.20 -4.14 16 20 C 0.19 8.22 5.37 86.73 0.47 8.68 16 21 N -0.62 -27.96 3.39 -691.98 -2.35 -30.31 16 22 C -0.24 -12.13 10.28 84.03 0.86 -11.27 16 23 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 24 C -0.06 -3.17 5.49 84.86 0.47 -2.70 16 25 N -0.95 -53.54 10.31 21.65 0.22 -53.31 16 26 Si 0.97 43.11 29.55 68.60 2.03 45.14 16 27 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 28 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 29 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 30 C 0.12 4.15 6.52 86.86 0.57 4.71 16 31 H 0.06 1.37 5.92 -2.39 -0.01 1.36 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.95 6.31 -2.38 -0.02 1.94 16 35 H 0.07 1.81 7.54 -2.39 -0.02 1.79 16 36 H 0.06 1.28 7.91 -2.39 -0.02 1.26 16 37 H 0.09 1.79 4.81 -2.39 -0.01 1.78 16 38 H 0.11 1.57 7.89 -2.39 -0.02 1.55 16 39 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.26 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.12 0.61 7.87 -2.39 -0.02 0.59 16 42 H 0.14 0.16 8.13 -2.39 -0.02 0.14 16 43 H 0.10 1.28 7.76 -2.39 -0.02 1.26 16 44 H 0.06 1.09 8.08 -2.39 -0.02 1.07 16 45 H 0.09 2.29 7.42 -2.39 -0.02 2.27 16 46 H 0.07 2.09 6.35 -2.39 -0.02 2.08 16 47 H 0.02 1.02 7.38 -2.39 -0.02 1.00 16 48 H 0.00 0.25 7.51 -2.39 -0.02 0.23 16 49 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 50 H 0.03 1.15 5.09 -2.39 -0.01 1.14 16 51 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -75.68 384.10 4.74 -70.93 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.95 Total: 13.11 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 8.69 Total: 17.87 kcal Atomic # 7 Polarization: -123.46 SS G_CDS: -6.87 Total: -130.34 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.05 Total: -16.72 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -75.68 4.74 -70.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033907582.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.858 kcal (2) G-P(sol) polarization free energy of solvation -75.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds