Wall clock time and date at job start Wed Apr 1 2020 05:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47048 * 2 1 4 4 C 1.34776 * 120.00179 * 84.71585 * 3 2 1 5 5 O 1.21282 * 119.99783 * 357.04134 * 4 3 2 6 6 C 1.50699 * 119.99947 * 177.31172 * 4 3 2 7 7 H 1.09000 * 109.45484 * 46.39818 * 6 4 3 8 8 C 1.53105 * 109.45973 * 286.44381 * 6 4 3 9 9 C 1.53423 * 109.57542 * 169.90668 * 8 6 4 10 10 C 1.50594 * 108.33160 * 49.82272 * 9 8 6 11 11 N 1.32917 * 129.16107 * 163.38634 * 10 9 8 12 12 N 1.29015 * 108.63505 * 180.21236 * 11 10 9 13 13 N 1.29110 * 110.25998 * 359.97438 * 12 11 10 14 14 C 1.46497 * 126.00672 * 179.91215 * 13 12 11 15 15 C 1.34397 * 107.98359 * 359.92290 * 13 12 11 16 16 C 1.50541 * 129.24987 * 180.15558 * 15 13 12 17 17 C 1.46500 * 119.99975 * 264.72041 * 3 2 1 18 18 H 1.08994 * 110.64037 * 180.52706 * 17 3 2 19 19 C 1.55161 * 110.72108 * 57.19049 * 17 3 2 20 20 C 1.54911 * 101.58310 * 277.14046 * 19 17 3 21 21 N 1.47425 * 104.82955 * 322.98715 * 20 19 17 22 22 C 1.36937 * 125.64683 * 204.16098 * 21 20 19 23 23 H 1.08001 * 120.00032 * 337.30910 * 22 21 20 24 24 C 1.38815 * 119.99689 * 157.30924 * 22 21 20 25 25 N 1.31621 * 119.99820 * 161.75352 * 24 22 21 26 26 Si 1.86793 * 119.99997 * 341.75288 * 24 22 21 27 27 H 1.48500 * 109.47445 * 84.44791 * 26 24 22 28 28 H 1.48500 * 109.47083 * 204.44964 * 26 24 22 29 29 H 1.48499 * 109.47362 * 324.44632 * 26 24 22 30 30 C 1.47024 * 108.70145 * 24.13232 * 21 20 19 31 31 H 1.09003 * 109.46831 * 184.37935 * 1 2 3 32 32 H 1.09000 * 109.47448 * 304.38038 * 1 2 3 33 33 H 1.08997 * 109.47110 * 64.38220 * 1 2 3 34 34 H 1.09001 * 109.47245 * 240.00417 * 2 1 3 35 35 H 1.09002 * 109.47073 * 119.99635 * 2 1 3 36 36 H 1.09003 * 109.45171 * 289.94339 * 8 6 4 37 37 H 1.09004 * 109.45109 * 49.87363 * 8 6 4 38 38 H 1.09003 * 109.70034 * 290.11222 * 9 8 6 39 39 H 1.09002 * 109.68211 * 169.53121 * 9 8 6 40 40 H 1.09006 * 109.46677 * 270.02171 * 14 13 12 41 41 H 1.09000 * 109.47228 * 30.01366 * 14 13 12 42 42 H 1.08998 * 109.47449 * 150.02011 * 14 13 12 43 43 H 1.08995 * 109.69721 * 43.86962 * 16 15 13 44 44 H 1.08999 * 109.72138 * 283.30091 * 16 15 13 45 45 H 1.09004 * 111.00275 * 35.21202 * 19 17 3 46 46 H 1.08998 * 111.00669 * 159.06296 * 19 17 3 47 47 H 1.08997 * 110.36317 * 204.15061 * 20 19 17 48 48 H 1.09002 * 110.36530 * 81.82978 * 20 19 17 49 49 H 0.96998 * 119.99992 * 179.97438 * 25 24 22 50 50 H 1.08996 * 109.87849 * 239.51562 * 30 21 20 51 51 H 1.09007 * 110.01219 * 118.42937 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1416 2.0525 1.1622 5 8 1.7979 1.5321 2.2024 6 6 2.7009 3.4518 1.1685 7 1 2.2263 4.0360 0.3801 8 6 4.2115 3.3985 0.9244 9 6 4.7430 4.8166 0.6793 10 6 4.2322 5.7104 1.7785 11 7 4.6578 6.9144 2.1472 12 7 3.9392 7.3198 3.1391 13 7 3.0530 6.4310 3.4418 14 6 2.0597 6.5354 4.5135 15 6 3.2023 5.3931 2.6011 16 6 2.4227 4.1073 2.5274 17 6 2.3726 2.0330 -1.2633 18 1 2.7244 3.0492 -1.0860 19 6 1.1673 2.0279 -2.2405 20 6 1.2771 0.6134 -2.8624 21 7 2.7251 0.3718 -2.9974 22 6 3.3110 -0.4912 -3.8846 23 1 2.7422 -1.3127 -4.2945 24 6 4.6359 -0.3101 -4.2571 25 7 5.3068 -1.3011 -4.8049 26 14 5.4665 1.3400 -3.9808 27 1 5.9846 1.4069 -2.5907 28 1 6.5925 1.4936 -4.9366 29 1 4.4828 2.4316 -4.1954 30 6 3.4360 1.2115 -2.0221 31 1 -0.3633 -1.0247 0.0785 32 1 -0.3634 0.5803 0.8481 33 1 -0.3633 0.4443 -0.9266 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 4.7053 2.9714 1.7973 37 1 4.4165 2.7780 0.0519 38 1 4.3878 5.1806 -0.2848 39 1 5.8329 4.8072 0.6901 40 1 2.4746 6.1257 5.4345 41 1 1.7992 7.5826 4.6668 42 1 1.1664 5.9755 4.2368 43 1 1.3575 4.3176 2.6231 44 1 2.7387 3.4392 3.3285 45 1 0.2271 2.1459 -1.7018 46 1 1.2787 2.7994 -3.0024 47 1 0.7959 0.5906 -3.8402 48 1 0.8288 -0.1278 -2.2007 49 1 6.2325 -1.1744 -5.0656 50 1 4.1219 1.8816 -2.5403 51 1 3.9886 0.5842 -1.3225 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033939489.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:52 Heat of formation + Delta-G solvation = 82.500185 kcal Electronic energy + Delta-G solvation = -32735.489505 eV Core-core repulsion = 28672.512953 eV Total energy + Delta-G solvation = -4062.976552 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.45091 -41.75344 -39.53125 -37.74738 -36.13272 -35.87236 -34.11495 -32.87528 -31.59719 -31.35416 -30.95022 -29.15759 -28.70006 -26.30620 -25.99082 -24.54033 -23.51854 -22.85821 -22.38246 -21.98932 -20.96618 -19.70531 -18.96037 -18.68768 -18.03461 -17.69927 -17.39369 -17.02749 -16.50766 -15.95088 -15.45194 -15.28037 -15.15905 -15.03723 -14.89272 -14.77803 -14.64036 -14.47988 -14.13362 -14.10473 -13.64479 -13.46448 -13.36759 -13.19151 -13.12338 -13.04301 -12.96681 -12.70576 -12.59215 -12.38335 -12.27301 -12.16284 -12.03119 -12.00244 -11.81393 -11.63265 -11.56972 -11.27496 -10.95710 -10.73788 -10.69429 -9.88672 -9.68107 -8.94116 -8.14186 -5.44657 0.52899 1.32887 1.41964 1.42558 1.44804 1.51719 1.56852 1.94884 2.44729 3.04788 3.09479 3.29837 3.38008 3.61304 3.69226 3.72152 3.74092 3.77414 3.84180 4.03549 4.07416 4.19710 4.26063 4.28823 4.38495 4.40345 4.45242 4.45604 4.56121 4.56577 4.62278 4.62984 4.80023 4.82817 4.85787 4.90273 4.91619 4.98529 5.00035 5.02884 5.10342 5.12455 5.17052 5.26170 5.27286 5.47536 5.56118 5.62202 5.76550 6.15410 6.43126 6.80937 7.12646 7.43836 7.57474 8.13700 9.06541 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013374 B = 0.003639 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.163522 B = 7692.223178 C = 9184.943029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.102 3.898 3 N -0.589 5.589 4 C 0.526 3.474 5 O -0.567 6.567 6 C -0.098 4.098 7 H 0.124 0.876 8 C -0.112 4.112 9 C -0.030 4.030 10 C -0.032 4.032 11 N -0.300 5.300 12 N -0.127 5.127 13 N -0.276 5.276 14 C 0.066 3.934 15 C -0.010 4.010 16 C -0.014 4.014 17 C 0.128 3.872 18 H 0.133 0.867 19 C -0.133 4.133 20 C 0.111 3.889 21 N -0.622 5.622 22 C -0.229 4.229 23 H 0.056 0.944 24 C -0.041 4.041 25 N -0.962 5.962 26 Si 0.953 3.047 27 H -0.270 1.270 28 H -0.318 1.318 29 H -0.255 1.255 30 C 0.103 3.897 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.124 0.876 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.105 0.895 46 H 0.092 0.908 47 H 0.043 0.957 48 H 0.053 0.947 49 H 0.260 0.740 50 H 0.029 0.971 51 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.982 14.902 17.406 25.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.020 4.020 3 N -0.320 5.320 4 C 0.315 3.685 5 O -0.446 6.446 6 C -0.120 4.120 7 H 0.142 0.858 8 C -0.150 4.150 9 C -0.069 4.069 10 C -0.173 4.173 11 N -0.163 5.163 12 N -0.104 5.104 13 N -0.068 5.068 14 C -0.073 4.073 15 C -0.145 4.145 16 C -0.054 4.054 17 C 0.024 3.976 18 H 0.151 0.849 19 C -0.172 4.172 20 C -0.012 4.012 21 N -0.350 5.350 22 C -0.358 4.358 23 H 0.074 0.926 24 C -0.235 4.235 25 N -0.609 5.609 26 Si 0.784 3.216 27 H -0.196 1.196 28 H -0.248 1.248 29 H -0.180 1.180 30 C -0.022 4.022 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.126 0.874 41 H 0.133 0.867 42 H 0.143 0.857 43 H 0.125 0.875 44 H 0.113 0.887 45 H 0.123 0.877 46 H 0.111 0.889 47 H 0.062 0.938 48 H 0.071 0.929 49 H 0.069 0.931 50 H 0.046 0.954 51 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -11.463 15.965 18.246 26.818 hybrid contribution 0.662 -0.892 -0.542 1.236 sum -10.800 15.073 17.704 25.637 Atomic orbital electron populations 1.22153 0.94160 1.02723 1.02462 1.21578 0.95770 0.82177 1.02468 1.47973 1.63967 1.14042 1.05992 1.20660 0.77240 0.88038 0.82544 1.90666 1.51263 1.70518 1.32179 1.21357 0.97727 0.92759 1.00165 0.85781 1.21665 0.92811 0.96958 1.03599 1.19989 1.01639 0.90470 0.94761 1.22035 0.98151 0.94602 1.02536 1.74751 1.21719 1.12047 1.07796 1.78494 1.01983 1.16361 1.13575 1.47205 1.24170 1.11194 1.24249 1.22769 0.89748 1.07537 0.87294 1.21950 1.02214 0.94656 0.95710 1.19896 0.99793 0.88343 0.97356 1.22312 0.95193 0.96916 0.83168 0.84909 1.23180 0.98248 0.97506 0.98279 1.22236 0.84097 0.95793 0.99113 1.44786 1.02876 1.48626 1.38705 1.18532 0.95308 1.03638 1.18287 0.92574 1.25766 0.97765 1.00560 0.99429 1.69941 1.10223 1.32375 1.48397 0.85844 0.76991 0.82048 0.76743 1.19646 1.24762 1.17995 1.22142 0.95207 0.93565 0.91333 0.91250 0.92603 0.90966 0.90113 0.92072 0.90905 0.90065 0.88167 0.89184 0.87401 0.86726 0.85740 0.87471 0.88667 0.87710 0.88927 0.93815 0.92922 0.93070 0.95354 0.95471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 9.28 71.98 0.67 -2.76 16 2 C 0.10 2.79 5.02 86.38 0.43 3.22 16 3 N -0.59 -14.51 2.44 -791.25 -1.93 -16.44 16 4 C 0.53 12.13 6.85 87.66 0.60 12.73 16 5 O -0.57 -16.05 15.47 -3.04 -0.05 -16.09 16 6 C -0.10 -1.68 1.63 -11.36 -0.02 -1.70 16 7 H 0.12 1.64 6.88 -2.39 -0.02 1.62 16 8 C -0.11 -2.11 4.75 30.77 0.15 -1.96 16 9 C -0.03 -0.56 6.30 29.96 0.19 -0.37 16 10 C -0.03 -0.74 7.11 41.75 0.30 -0.44 16 11 N -0.30 -8.48 12.40 -48.99 -0.61 -9.08 16 12 N -0.13 -3.23 13.19 37.02 0.49 -2.74 16 13 N -0.28 -4.98 3.73 -356.41 -1.33 -6.31 16 14 C 0.07 0.44 11.27 127.77 1.44 1.88 16 15 C -0.01 -0.19 6.76 41.50 0.28 0.09 16 16 C -0.01 -0.22 4.86 29.94 0.15 -0.07 16 17 C 0.13 3.18 2.55 46.18 0.12 3.30 16 18 H 0.13 2.50 4.94 -2.39 -0.01 2.48 16 19 C -0.13 -3.08 6.13 31.99 0.20 -2.88 16 20 C 0.11 3.59 6.08 86.86 0.53 4.12 16 21 N -0.62 -26.50 2.71 -691.99 -1.87 -28.37 16 22 C -0.23 -12.42 10.59 84.03 0.89 -11.53 16 23 H 0.06 3.36 8.06 -2.91 -0.02 3.34 16 24 C -0.04 -2.33 5.46 84.86 0.46 -1.87 16 25 N -0.96 -59.75 13.97 21.65 0.30 -59.45 16 26 Si 0.95 44.58 24.34 68.60 1.67 46.25 16 27 H -0.27 -11.80 6.93 99.48 0.69 -11.11 16 28 H -0.32 -15.52 7.11 99.48 0.71 -14.81 16 29 H -0.25 -10.86 6.78 99.48 0.67 -10.18 16 30 C 0.10 3.74 4.03 86.73 0.35 4.09 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.45 4.94 -2.39 -0.01 1.44 16 34 H 0.08 2.64 4.92 -2.39 -0.01 2.63 16 35 H 0.06 1.80 7.63 -2.39 -0.02 1.78 16 36 H 0.07 1.45 8.12 -2.39 -0.02 1.43 16 37 H 0.08 1.68 6.31 -2.38 -0.02 1.67 16 38 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 41 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.12 0.22 7.71 -2.39 -0.02 0.21 16 43 H 0.11 1.16 7.87 -2.39 -0.02 1.15 16 44 H 0.10 1.61 7.59 -2.39 -0.02 1.59 16 45 H 0.10 1.86 6.84 -2.39 -0.02 1.84 16 46 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.05 1.61 4.10 -2.39 -0.01 1.60 16 49 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 50 H 0.03 1.11 3.10 -2.39 -0.01 1.11 16 51 H 0.03 1.10 8.01 -2.38 -0.02 1.08 16 Total: -1.00 -76.88 378.20 4.31 -72.57 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.91 Total: 13.82 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 6.73 Total: 5.85 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -4.95 Total: -122.39 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.05 Total: -16.09 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.67 Total: 46.25 kcal Total: -76.88 4.31 -72.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033939489.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.070 kcal (2) G-P(sol) polarization free energy of solvation -76.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds