Wall clock time and date at job start Wed Apr 1 2020 05:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47040 * 2 1 4 4 C 1.34774 * 120.00724 * 84.14670 * 3 2 1 5 5 O 1.21288 * 119.99337 * 3.59303 * 4 3 2 6 6 C 1.50699 * 120.00605 * 183.32179 * 4 3 2 7 7 H 1.08997 * 109.45826 * 307.17528 * 6 4 3 8 8 C 1.53111 * 109.45406 * 67.14412 * 6 4 3 9 9 C 1.53423 * 109.57503 * 190.09688 * 8 6 4 10 10 C 1.50602 * 108.33547 * 310.18147 * 9 8 6 11 11 N 1.32901 * 129.16927 * 196.47386 * 10 9 8 12 12 N 1.29019 * 108.64326 * 179.89104 * 11 10 9 13 13 N 1.29108 * 110.25452 * 0.02569 * 12 11 10 14 14 C 1.46499 * 126.00768 * 180.02562 * 13 12 11 15 15 C 1.34401 * 107.98381 * 0.06435 * 13 12 11 16 16 C 1.50535 * 129.25677 * 179.74648 * 15 13 12 17 17 C 1.46504 * 119.99820 * 264.14377 * 3 2 1 18 18 H 1.08997 * 110.64042 * 182.23838 * 17 3 2 19 19 C 1.55161 * 110.71921 * 58.89813 * 17 3 2 20 20 C 1.54912 * 101.58143 * 277.13897 * 19 17 3 21 21 N 1.47426 * 104.83000 * 322.99304 * 20 19 17 22 22 C 1.36941 * 125.64186 * 204.16559 * 21 20 19 23 23 H 1.08002 * 119.99957 * 179.97438 * 22 21 20 24 24 C 1.38817 * 119.99991 * 359.95640 * 22 21 20 25 25 N 1.31615 * 119.99922 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99476 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47542 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47098 * 120.00234 * 26 24 22 29 29 H 1.48506 * 109.46640 * 239.99984 * 26 24 22 30 30 C 1.47017 * 108.70653 * 24.12619 * 21 20 19 31 31 H 1.09008 * 109.46774 * 60.00528 * 1 2 3 32 32 H 1.09001 * 109.47247 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47253 * 300.00433 * 1 2 3 34 34 H 1.08996 * 109.47253 * 239.99567 * 2 1 3 35 35 H 1.09005 * 109.46306 * 119.99290 * 2 1 3 36 36 H 1.09005 * 109.45152 * 310.12354 * 8 6 4 37 37 H 1.08997 * 109.45901 * 70.06107 * 8 6 4 38 38 H 1.09000 * 109.69270 * 69.88592 * 9 8 6 39 39 H 1.08999 * 109.69378 * 190.46997 * 9 8 6 40 40 H 1.09004 * 109.46857 * 90.02562 * 14 13 12 41 41 H 1.08999 * 109.46950 * 210.02897 * 14 13 12 42 42 H 1.08994 * 109.46840 * 330.02804 * 14 13 12 43 43 H 1.09000 * 109.70145 * 76.85789 * 16 15 13 44 44 H 1.08994 * 109.67841 * 316.28226 * 16 15 13 45 45 H 1.08997 * 111.00295 * 35.21711 * 19 17 3 46 46 H 1.09001 * 110.99892 * 159.06252 * 19 17 3 47 47 H 1.09000 * 110.36432 * 204.15043 * 20 19 17 48 48 H 1.08999 * 110.45463 * 81.87655 * 20 19 17 49 49 H 0.96998 * 119.99654 * 180.02562 * 25 24 22 50 50 H 1.08998 * 109.88344 * 239.51991 * 30 21 20 51 51 H 1.09005 * 109.87845 * 118.35947 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1308 2.0563 1.1610 5 8 1.8901 1.5001 2.2116 6 6 2.5614 3.5004 1.1544 7 1 3.4905 3.5997 0.5932 8 6 1.4741 4.3538 0.4958 9 6 2.0075 5.7726 0.2585 10 6 2.6202 6.2691 1.5415 11 7 2.9322 7.5110 1.8972 12 7 3.4347 7.4858 3.0853 13 7 3.4683 6.2745 3.5308 14 6 3.9708 5.8522 4.8405 15 6 2.9620 5.4690 2.5815 16 6 2.7824 3.9745 2.5967 17 6 2.3845 2.0286 -1.2622 18 1 2.7631 3.0347 -1.0822 19 6 1.1759 2.0584 -2.2347 20 6 1.2471 0.6440 -2.8626 21 7 2.6879 0.3659 -3.0038 22 6 3.2481 -0.5084 -3.8967 23 1 4.3196 -0.6418 -3.9221 24 6 2.4388 -1.2234 -4.7690 25 7 1.1331 -1.0614 -4.7374 26 14 3.2031 -2.4164 -5.9864 27 1 4.6788 -2.4156 -5.8204 28 1 2.6772 -3.7825 -5.7373 29 1 2.8608 -1.9988 -7.3698 30 6 3.4238 1.1831 -2.0281 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8932 -0.5138 0.8901 36 1 1.1909 3.9082 -0.4579 37 1 0.6023 4.3981 1.1485 38 1 2.7635 5.7543 -0.5265 39 1 1.1881 6.4287 -0.0352 40 1 3.1561 5.8678 5.5645 41 1 4.3723 4.8415 4.7669 42 1 4.7578 6.5331 5.1644 43 1 1.9164 3.7147 3.2056 44 1 3.6750 3.5017 3.0062 45 1 0.2411 2.1984 -1.6920 46 1 1.3044 2.8298 -2.9940 47 1 0.7619 0.6374 -3.8386 48 1 0.7820 -0.0892 -2.2036 49 1 0.5676 -1.5613 -5.3467 50 1 4.1248 1.8374 -2.5463 51 1 3.9607 0.5371 -1.3334 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033939508.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:03 Heat of formation + Delta-G solvation = 98.329700 kcal Electronic energy + Delta-G solvation = -32444.584868 eV Core-core repulsion = 28382.294735 eV Total energy + Delta-G solvation = -4062.290133 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.58947 -40.49997 -37.94446 -36.75900 -35.12046 -34.51690 -32.20311 -31.44433 -30.79283 -29.93700 -29.27178 -28.09734 -27.06722 -25.10084 -24.59045 -23.52681 -22.37280 -21.60420 -21.04359 -20.36992 -19.91542 -18.34916 -17.63189 -17.24468 -17.04160 -16.74389 -15.71420 -15.24270 -15.07075 -14.79898 -14.27978 -14.18028 -14.06749 -13.91854 -13.81427 -13.56897 -13.32274 -13.09031 -12.96170 -12.69174 -12.39387 -12.25174 -12.08278 -11.92651 -11.77245 -11.70457 -11.57562 -11.26329 -11.21034 -11.06067 -10.92047 -10.91824 -10.70448 -10.54093 -10.18495 -10.15433 -10.03412 -10.00422 -9.72128 -9.44815 -9.00833 -8.71716 -8.34865 -6.92195 -5.73598 -3.15608 1.36334 2.09228 2.37656 2.71189 3.15696 3.34778 3.41211 3.42996 3.92661 4.16820 4.33994 4.41960 4.50197 4.57458 4.60861 4.67314 4.88427 4.91410 4.98271 5.13548 5.23424 5.24672 5.27168 5.37284 5.41287 5.52752 5.56568 5.61466 5.65567 5.67297 5.76411 5.82285 5.84407 5.89169 5.97220 6.09789 6.17120 6.18818 6.29903 6.35075 6.37134 6.43334 6.51401 6.61431 6.64500 6.89457 7.43681 7.55231 7.69821 7.77496 8.27508 8.31904 8.33251 9.13660 9.74079 10.37044 11.29781 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.002688 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.213810 B =10415.458273 C =10858.278458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.103 3.897 3 N -0.584 5.584 4 C 0.520 3.480 5 O -0.550 6.550 6 C -0.102 4.102 7 H 0.103 0.897 8 C -0.118 4.118 9 C -0.031 4.031 10 C -0.019 4.019 11 N -0.261 5.261 12 N -0.101 5.101 13 N -0.285 5.285 14 C 0.080 3.920 15 C -0.015 4.015 16 C -0.024 4.024 17 C 0.114 3.886 18 H 0.095 0.905 19 C -0.159 4.159 20 C 0.139 3.861 21 N -0.601 5.601 22 C -0.224 4.224 23 H 0.077 0.923 24 C -0.008 4.008 25 N -0.919 5.919 26 Si 0.913 3.087 27 H -0.281 1.281 28 H -0.291 1.291 29 H -0.290 1.290 30 C 0.125 3.875 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.109 0.891 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.105 0.895 48 H 0.032 0.968 49 H 0.252 0.748 50 H 0.033 0.967 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.527 10.976 15.186 18.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.018 4.018 3 N -0.315 5.315 4 C 0.307 3.693 5 O -0.429 6.429 6 C -0.124 4.124 7 H 0.121 0.879 8 C -0.156 4.156 9 C -0.070 4.070 10 C -0.159 4.159 11 N -0.126 5.126 12 N -0.079 5.079 13 N -0.077 5.077 14 C -0.061 4.061 15 C -0.149 4.149 16 C -0.063 4.063 17 C 0.010 3.990 18 H 0.113 0.887 19 C -0.198 4.198 20 C 0.015 3.985 21 N -0.328 5.328 22 C -0.352 4.352 23 H 0.095 0.905 24 C -0.204 4.204 25 N -0.568 5.568 26 Si 0.744 3.256 27 H -0.206 1.206 28 H -0.218 1.218 29 H -0.218 1.218 30 C -0.002 4.002 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.127 0.873 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.116 0.884 44 H 0.103 0.897 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.123 0.877 48 H 0.049 0.951 49 H 0.063 0.937 50 H 0.051 0.949 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.704 12.024 15.923 20.025 hybrid contribution 0.331 -1.718 -0.625 1.857 sum 2.034 10.306 15.298 18.557 Atomic orbital electron populations 1.22221 0.96076 1.02116 1.01911 1.21668 0.94384 0.81767 1.04031 1.47960 1.63375 1.14252 1.05945 1.20282 0.77495 0.87897 0.83616 1.90659 1.51457 1.69973 1.30824 1.21315 1.01454 0.92768 0.96897 0.87915 1.21803 0.97416 0.93859 1.02513 1.19962 1.00357 0.95282 0.91375 1.21720 1.06137 0.89396 0.98632 1.74787 1.12875 1.20691 1.04233 1.78574 1.20807 1.01247 1.07254 1.46811 1.40551 1.05894 1.14440 1.22280 1.01602 1.02749 0.79515 1.21844 1.05355 0.96656 0.91015 1.19919 1.03970 0.85201 0.97223 1.22431 0.97120 0.95996 0.83434 0.88679 1.23453 0.96196 1.02374 0.97821 1.22243 0.85742 0.88719 1.01780 1.44515 1.02003 1.47473 1.38822 1.19088 0.91744 1.14603 1.09755 0.90496 1.24761 0.95528 1.00265 0.99830 1.69792 1.02276 1.44547 1.40178 0.86028 0.78134 0.80569 0.80918 1.20580 1.21770 1.21751 1.21652 0.93476 0.93421 0.91655 0.91282 0.92047 0.93337 0.87334 0.91398 0.88829 0.90701 0.89426 0.89196 0.88955 0.88205 0.87987 0.88393 0.89747 0.91580 0.90909 0.87739 0.95050 0.93739 0.94912 0.95415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 9.26 37.16 0.34 -2.17 16 2 C 0.10 1.70 5.02 -4.04 -0.02 1.68 16 3 N -0.58 -8.59 2.44 -164.03 -0.40 -8.99 16 4 C 0.52 7.18 6.93 -10.99 -0.08 7.11 16 5 O -0.55 -9.06 15.43 5.55 0.09 -8.97 16 6 C -0.10 -1.08 1.64 -91.49 -0.15 -1.23 16 7 H 0.10 1.01 7.19 -51.93 -0.37 0.64 16 8 C -0.12 -1.13 4.68 -26.46 -0.12 -1.26 16 9 C -0.03 -0.29 6.30 -27.71 -0.17 -0.47 16 10 C -0.02 -0.23 7.11 -83.12 -0.59 -0.82 16 11 N -0.26 -3.73 12.40 33.16 0.41 -3.32 16 12 N -0.10 -1.35 13.19 60.35 0.80 -0.55 16 13 N -0.29 -2.95 3.73 -64.01 -0.24 -3.19 16 14 C 0.08 0.42 11.27 59.85 0.67 1.09 16 15 C -0.01 -0.16 6.76 -82.49 -0.56 -0.72 16 16 C -0.02 -0.23 4.78 -27.74 -0.13 -0.36 16 17 C 0.11 1.66 2.47 -66.09 -0.16 1.50 16 18 H 0.10 1.12 4.87 -51.93 -0.25 0.87 16 19 C -0.16 -2.53 5.35 -24.58 -0.13 -2.66 16 20 C 0.14 2.95 4.74 -2.53 -0.01 2.94 16 21 N -0.60 -13.71 2.90 -170.07 -0.49 -14.20 16 22 C -0.22 -5.78 10.27 -15.06 -0.15 -5.93 16 23 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 24 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 25 N -0.92 -25.05 10.09 55.49 0.56 -24.49 16 26 Si 0.91 21.11 29.55 -169.99 -5.02 16.09 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 30 C 0.12 2.29 6.17 -3.07 -0.02 2.27 16 31 H 0.07 1.08 4.94 -51.92 -0.26 0.83 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.11 2.10 4.96 -51.93 -0.26 1.84 16 35 H 0.07 1.13 7.56 -51.93 -0.39 0.74 16 36 H 0.09 0.91 5.19 -51.93 -0.27 0.64 16 37 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 0.35 7.71 -51.93 -0.40 -0.05 16 42 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.10 1.01 7.67 -51.93 -0.40 0.61 16 44 H 0.08 0.74 7.87 -51.93 -0.41 0.33 16 45 H 0.07 0.96 6.79 -51.93 -0.35 0.61 16 46 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.10 2.61 5.87 -51.93 -0.31 2.30 16 48 H 0.03 0.69 4.14 -51.93 -0.22 0.48 16 49 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 50 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.03 0.53 7.96 -51.93 -0.41 0.12 16 LS Contribution 381.42 15.07 5.75 5.75 Total: -1.00 -31.94 381.42 -7.58 -39.53 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.64 Total: 1.70 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -1.38 Total: 0.66 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 0.63 Total: -54.75 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.97 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.94 -7.58 -39.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033939508.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.858 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds