Wall clock time and date at job start Wed Apr 1 2020 05:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47040 * 2 1 4 4 C 1.34774 * 120.00724 * 84.14670 * 3 2 1 5 5 O 1.21288 * 119.99337 * 3.59303 * 4 3 2 6 6 C 1.50699 * 120.00605 * 183.32179 * 4 3 2 7 7 H 1.08997 * 109.45826 * 307.17528 * 6 4 3 8 8 C 1.53111 * 109.45406 * 67.14412 * 6 4 3 9 9 C 1.53423 * 109.57503 * 190.09688 * 8 6 4 10 10 C 1.50602 * 108.33547 * 310.18147 * 9 8 6 11 11 N 1.32901 * 129.16927 * 196.47386 * 10 9 8 12 12 N 1.29019 * 108.64326 * 179.89104 * 11 10 9 13 13 N 1.29108 * 110.25452 * 0.02569 * 12 11 10 14 14 C 1.46499 * 126.00768 * 180.02562 * 13 12 11 15 15 C 1.34401 * 107.98381 * 0.06435 * 13 12 11 16 16 C 1.50535 * 129.25677 * 179.74648 * 15 13 12 17 17 C 1.46504 * 119.99820 * 264.14377 * 3 2 1 18 18 H 1.08997 * 110.64042 * 182.23838 * 17 3 2 19 19 C 1.55161 * 110.71921 * 58.89813 * 17 3 2 20 20 C 1.54912 * 101.58143 * 277.13897 * 19 17 3 21 21 N 1.47426 * 104.83000 * 322.99304 * 20 19 17 22 22 C 1.36941 * 125.64186 * 204.16559 * 21 20 19 23 23 H 1.08002 * 119.99957 * 179.97438 * 22 21 20 24 24 C 1.38817 * 119.99991 * 359.95640 * 22 21 20 25 25 N 1.31615 * 119.99922 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99476 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47542 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47098 * 120.00234 * 26 24 22 29 29 H 1.48506 * 109.46640 * 239.99984 * 26 24 22 30 30 C 1.47017 * 108.70653 * 24.12619 * 21 20 19 31 31 H 1.09008 * 109.46774 * 60.00528 * 1 2 3 32 32 H 1.09001 * 109.47247 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47253 * 300.00433 * 1 2 3 34 34 H 1.08996 * 109.47253 * 239.99567 * 2 1 3 35 35 H 1.09005 * 109.46306 * 119.99290 * 2 1 3 36 36 H 1.09005 * 109.45152 * 310.12354 * 8 6 4 37 37 H 1.08997 * 109.45901 * 70.06107 * 8 6 4 38 38 H 1.09000 * 109.69270 * 69.88592 * 9 8 6 39 39 H 1.08999 * 109.69378 * 190.46997 * 9 8 6 40 40 H 1.09004 * 109.46857 * 90.02562 * 14 13 12 41 41 H 1.08999 * 109.46950 * 210.02897 * 14 13 12 42 42 H 1.08994 * 109.46840 * 330.02804 * 14 13 12 43 43 H 1.09000 * 109.70145 * 76.85789 * 16 15 13 44 44 H 1.08994 * 109.67841 * 316.28226 * 16 15 13 45 45 H 1.08997 * 111.00295 * 35.21711 * 19 17 3 46 46 H 1.09001 * 110.99892 * 159.06252 * 19 17 3 47 47 H 1.09000 * 110.36432 * 204.15043 * 20 19 17 48 48 H 1.08999 * 110.45463 * 81.87655 * 20 19 17 49 49 H 0.96998 * 119.99654 * 180.02562 * 25 24 22 50 50 H 1.08998 * 109.88344 * 239.51991 * 30 21 20 51 51 H 1.09005 * 109.87845 * 118.35947 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1308 2.0563 1.1610 5 8 1.8901 1.5001 2.2116 6 6 2.5614 3.5004 1.1544 7 1 3.4905 3.5997 0.5932 8 6 1.4741 4.3538 0.4958 9 6 2.0075 5.7726 0.2585 10 6 2.6202 6.2691 1.5415 11 7 2.9322 7.5110 1.8972 12 7 3.4347 7.4858 3.0853 13 7 3.4683 6.2745 3.5308 14 6 3.9708 5.8522 4.8405 15 6 2.9620 5.4690 2.5815 16 6 2.7824 3.9745 2.5967 17 6 2.3845 2.0286 -1.2622 18 1 2.7631 3.0347 -1.0822 19 6 1.1759 2.0584 -2.2347 20 6 1.2471 0.6440 -2.8626 21 7 2.6879 0.3659 -3.0038 22 6 3.2481 -0.5084 -3.8967 23 1 4.3196 -0.6418 -3.9221 24 6 2.4388 -1.2234 -4.7690 25 7 1.1331 -1.0614 -4.7374 26 14 3.2031 -2.4164 -5.9864 27 1 4.6788 -2.4156 -5.8204 28 1 2.6772 -3.7825 -5.7373 29 1 2.8608 -1.9988 -7.3698 30 6 3.4238 1.1831 -2.0281 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8932 -0.5138 0.8901 36 1 1.1909 3.9082 -0.4579 37 1 0.6023 4.3981 1.1485 38 1 2.7635 5.7543 -0.5265 39 1 1.1881 6.4287 -0.0352 40 1 3.1561 5.8678 5.5645 41 1 4.3723 4.8415 4.7669 42 1 4.7578 6.5331 5.1644 43 1 1.9164 3.7147 3.2056 44 1 3.6750 3.5017 3.0062 45 1 0.2411 2.1984 -1.6920 46 1 1.3044 2.8298 -2.9940 47 1 0.7619 0.6374 -3.8386 48 1 0.7820 -0.0892 -2.2036 49 1 0.5676 -1.5613 -5.3467 50 1 4.1248 1.8374 -2.5463 51 1 3.9607 0.5371 -1.3334 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033939508.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:02 Heat of formation + Delta-G solvation = 78.955055 kcal Electronic energy + Delta-G solvation = -32445.425016 eV Core-core repulsion = 28382.294735 eV Total energy + Delta-G solvation = -4063.130281 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.41291 -41.66071 -39.27807 -37.68416 -36.05912 -35.83658 -33.86873 -32.66574 -31.53465 -30.97816 -30.88067 -28.72331 -28.52724 -26.43202 -25.98498 -24.39370 -23.51727 -22.40713 -22.29876 -21.93500 -20.88793 -19.47582 -18.84768 -18.69080 -17.96860 -17.58672 -17.00347 -16.68333 -16.30385 -16.07862 -15.62707 -15.22603 -15.03839 -14.83399 -14.75178 -14.48199 -14.32893 -14.11541 -14.08953 -13.67820 -13.61635 -13.48045 -13.31338 -13.05434 -12.98648 -12.98076 -12.86263 -12.71861 -12.55070 -12.25779 -12.10148 -12.02525 -11.95505 -11.88774 -11.74147 -11.52423 -11.41757 -11.38736 -10.92255 -10.68546 -10.59126 -9.84403 -9.61577 -8.77297 -7.70608 -5.12650 0.55919 1.45262 1.49210 1.50035 1.50967 1.59343 1.62206 2.02141 2.53725 3.11312 3.34874 3.40590 3.65724 3.74385 3.77968 3.80392 3.89221 3.93150 4.03903 4.10248 4.18750 4.26572 4.29835 4.33505 4.46381 4.47704 4.52510 4.58995 4.59211 4.67447 4.76124 4.82693 4.90829 4.93629 4.95704 4.99942 5.05240 5.07513 5.11707 5.13793 5.20791 5.26043 5.35269 5.37568 5.55497 5.62145 5.64834 5.82308 5.94540 6.42123 6.53782 7.18227 7.20109 7.47385 7.87253 8.48730 9.29801 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.002688 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.213810 B =10415.458273 C =10858.278458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.110 3.890 3 N -0.586 5.586 4 C 0.524 3.476 5 O -0.575 6.575 6 C -0.097 4.097 7 H 0.119 0.881 8 C -0.110 4.110 9 C -0.027 4.027 10 C -0.031 4.031 11 N -0.298 5.298 12 N -0.129 5.129 13 N -0.277 5.277 14 C 0.066 3.934 15 C -0.013 4.013 16 C -0.015 4.015 17 C 0.132 3.868 18 H 0.136 0.864 19 C -0.144 4.144 20 C 0.141 3.859 21 N -0.620 5.620 22 C -0.229 4.229 23 H 0.076 0.924 24 C -0.061 4.061 25 N -0.942 5.942 26 Si 0.968 3.032 27 H -0.271 1.271 28 H -0.297 1.297 29 H -0.294 1.294 30 C 0.120 3.880 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.120 0.880 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.065 0.935 48 H 0.019 0.981 49 H 0.244 0.756 50 H 0.044 0.956 51 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.302 12.120 16.385 20.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.013 4.013 3 N -0.317 5.317 4 C 0.313 3.687 5 O -0.455 6.455 6 C -0.119 4.119 7 H 0.136 0.864 8 C -0.148 4.148 9 C -0.066 4.066 10 C -0.172 4.172 11 N -0.162 5.162 12 N -0.106 5.106 13 N -0.070 5.070 14 C -0.073 4.073 15 C -0.148 4.148 16 C -0.055 4.055 17 C 0.028 3.972 18 H 0.154 0.846 19 C -0.183 4.183 20 C 0.017 3.983 21 N -0.346 5.346 22 C -0.359 4.359 23 H 0.094 0.906 24 C -0.254 4.254 25 N -0.592 5.592 26 Si 0.798 3.202 27 H -0.195 1.195 28 H -0.224 1.224 29 H -0.222 1.222 30 C -0.006 4.006 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.127 0.873 41 H 0.139 0.861 42 H 0.132 0.868 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.083 0.917 48 H 0.037 0.963 49 H 0.054 0.946 50 H 0.062 0.938 51 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 2.509 13.208 17.162 21.801 hybrid contribution 0.132 -2.121 -0.889 2.303 sum 2.642 11.087 16.274 19.868 Atomic orbital electron populations 1.22108 0.95207 1.02179 1.01804 1.21418 0.95003 0.82765 1.02090 1.47962 1.63598 1.13625 1.06504 1.20769 0.76421 0.88889 0.82595 1.90657 1.52375 1.70856 1.31598 1.21328 1.02312 0.90242 0.97968 0.86362 1.21748 0.96965 0.93629 1.02482 1.20023 1.00835 0.95018 0.90712 1.22176 1.06165 0.88994 0.99848 1.74738 1.14237 1.22157 1.05035 1.78496 1.21996 1.02663 1.07454 1.47193 1.39225 1.05073 1.15500 1.22738 1.02669 1.04136 0.77782 1.21969 1.05045 0.96918 0.90893 1.19865 1.04495 0.84444 0.96655 1.22369 0.95294 0.96874 0.82658 0.84638 1.23302 0.97754 0.99012 0.98222 1.22035 0.84679 0.91779 0.99834 1.44732 1.03192 1.47526 1.39172 1.19369 0.91857 1.14753 1.09891 0.90631 1.25432 0.96043 1.02180 1.01736 1.70039 1.03082 1.45299 1.40760 0.85149 0.77860 0.78377 0.78771 1.19543 1.22442 1.22155 1.21828 0.94390 0.93311 0.91054 0.91797 0.92095 0.92688 0.90492 0.91963 0.88457 0.90804 0.88169 0.88540 0.87313 0.86124 0.86763 0.88703 0.88411 0.89699 0.89688 0.91740 0.96312 0.94586 0.93805 0.96226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.61 9.26 71.98 0.67 -3.94 16 2 C 0.11 3.55 5.02 86.38 0.43 3.98 16 3 N -0.59 -15.97 2.44 -791.24 -1.93 -17.90 16 4 C 0.52 13.00 6.93 87.66 0.61 13.61 16 5 O -0.57 -17.60 15.43 -3.05 -0.05 -17.65 16 6 C -0.10 -1.69 1.64 -11.36 -0.02 -1.71 16 7 H 0.12 1.78 7.19 -2.39 -0.02 1.77 16 8 C -0.11 -1.72 4.68 30.77 0.14 -1.58 16 9 C -0.03 -0.43 6.30 29.96 0.19 -0.24 16 10 C -0.03 -0.67 7.11 41.75 0.30 -0.37 16 11 N -0.30 -8.17 12.40 -48.99 -0.61 -8.78 16 12 N -0.13 -3.27 13.19 37.02 0.49 -2.78 16 13 N -0.28 -5.15 3.73 -356.41 -1.33 -6.48 16 14 C 0.07 0.52 11.27 127.77 1.44 1.96 16 15 C -0.01 -0.25 6.76 41.50 0.28 0.04 16 16 C -0.02 -0.25 4.78 29.94 0.14 -0.10 16 17 C 0.13 3.47 2.47 46.18 0.11 3.58 16 18 H 0.14 2.56 4.87 -2.39 -0.01 2.55 16 19 C -0.14 -4.26 5.35 31.99 0.17 -4.08 16 20 C 0.14 6.00 4.74 86.86 0.41 6.41 16 21 N -0.62 -28.24 2.90 -691.98 -2.01 -30.25 16 22 C -0.23 -11.94 10.27 84.03 0.86 -11.08 16 23 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 24 C -0.06 -3.26 5.49 84.86 0.47 -2.80 16 25 N -0.94 -52.76 10.09 21.65 0.22 -52.54 16 26 Si 0.97 44.02 29.55 68.60 2.03 46.05 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 28 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 29 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 30 C 0.12 4.21 6.17 86.73 0.54 4.75 16 31 H 0.06 1.96 4.94 -2.38 -0.01 1.95 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 3.01 4.96 -2.39 -0.01 3.00 16 35 H 0.06 2.05 7.56 -2.38 -0.02 2.04 16 36 H 0.10 1.48 5.19 -2.38 -0.01 1.46 16 37 H 0.07 1.21 8.12 -2.39 -0.02 1.19 16 38 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.11 0.53 8.14 -2.38 -0.02 0.51 16 41 H 0.12 0.45 7.71 -2.39 -0.02 0.43 16 42 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.09 1.67 7.67 -2.39 -0.02 1.65 16 44 H 0.10 1.35 7.87 -2.39 -0.02 1.33 16 45 H 0.08 2.23 6.79 -2.39 -0.02 2.21 16 46 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 47 H 0.06 3.30 5.87 -2.39 -0.01 3.28 16 48 H 0.02 0.85 4.14 -2.39 -0.01 0.84 16 49 H 0.24 13.47 8.31 -92.71 -0.77 12.70 16 50 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 51 H 0.02 0.73 7.96 -2.38 -0.02 0.71 16 Total: -1.00 -71.23 381.42 4.51 -66.72 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.95 Total: 15.19 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 6.74 Total: 8.41 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -5.17 Total: -118.73 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.05 Total: -17.65 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -71.23 4.51 -66.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033939508.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.677 kcal (2) G-P(sol) polarization free energy of solvation -71.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds