Wall clock time and date at job start Wed Apr 1 2020 05:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.29111 * 126.00786 * 2 1 4 4 N 1.29020 * 110.25988 * 179.97438 * 3 2 1 5 5 C 1.32914 * 108.63249 * 359.97438 * 4 3 2 6 6 C 1.34401 * 126.00667 * 180.02562 * 2 1 3 7 7 C 1.50533 * 129.25838 * 0.38739 * 6 2 1 8 8 C 1.53346 * 108.37384 * 163.56633 * 7 6 2 9 9 H 1.08997 * 109.35355 * 289.52716 * 8 7 6 10 10 C 1.50697 * 109.49407 * 169.61483 * 8 7 6 11 11 O 1.21285 * 119.99610 * 359.80872 * 10 8 7 12 12 N 1.34767 * 120.00637 * 179.80874 * 10 8 7 13 13 C 1.46498 * 120.00432 * 180.02562 * 12 10 8 14 14 H 1.08998 * 108.45658 * 324.99520 * 13 12 10 15 15 C 1.52526 * 108.52345 * 207.28810 * 13 12 10 16 16 C 1.50305 * 105.33341 * 149.24066 * 15 13 12 17 17 C 1.54841 * 110.69084 * 97.83483 * 16 15 13 18 18 C 1.54893 * 110.14567 * 321.13236 * 17 16 15 19 19 N 1.43428 * 116.08110 * 318.64251 * 18 17 16 20 20 C 1.36936 * 120.53828 * 271.58878 * 19 18 17 21 21 H 1.07996 * 119.99898 * 336.25901 * 20 19 18 22 22 C 1.38820 * 120.00150 * 156.25836 * 20 19 18 23 23 N 1.31613 * 119.99880 * 338.61981 * 22 20 19 24 24 Si 1.86798 * 119.99768 * 158.61801 * 22 20 19 25 25 H 1.48506 * 109.47340 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47168 * 120.00363 * 24 22 20 27 27 H 1.48506 * 109.47037 * 240.00212 * 24 22 20 28 28 C 1.46232 * 108.52536 * 82.71210 * 13 12 10 29 29 C 1.53117 * 109.62365 * 49.52857 * 8 7 6 30 30 C 1.50604 * 129.15788 * 180.21189 * 5 4 3 31 31 H 1.08992 * 109.46894 * 269.97356 * 1 2 3 32 32 H 1.09003 * 109.46536 * 29.97525 * 1 2 3 33 33 H 1.09000 * 109.46719 * 149.97511 * 1 2 3 34 34 H 1.09006 * 109.69059 * 283.21404 * 7 6 2 35 35 H 1.09000 * 109.69451 * 43.79321 * 7 6 2 36 36 H 0.97005 * 119.99805 * 359.97438 * 12 10 8 37 37 H 1.09004 * 110.25055 * 268.32559 * 15 13 12 38 38 H 1.09009 * 110.24908 * 30.37738 * 15 13 12 39 39 H 1.09003 * 109.27022 * 337.52901 * 16 15 13 40 40 H 1.08999 * 109.23578 * 218.12036 * 16 15 13 41 41 H 1.09004 * 109.35751 * 200.92298 * 17 16 15 42 42 H 1.09004 * 109.24493 * 81.27288 * 17 16 15 43 43 H 1.08999 * 108.16041 * 196.92142 * 18 17 16 44 44 H 1.09008 * 107.99562 * 80.22963 * 18 17 16 45 45 H 0.97005 * 120.00061 * 179.97438 * 23 22 20 46 46 H 1.08999 * 109.84281 * 299.15376 * 28 13 12 47 47 H 1.09001 * 109.85037 * 60.13932 * 28 13 12 48 48 H 1.09000 * 109.45425 * 169.97465 * 29 8 7 49 49 H 1.08991 * 109.45411 * 50.03304 * 29 8 7 50 50 H 1.09004 * 109.69298 * 283.17003 * 30 5 4 51 51 H 1.08998 * 109.68655 * 43.74816 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4658 0.6943 0.0005 5 6 3.5327 -0.6332 0.0015 6 6 2.2551 -1.0872 -0.0005 7 6 1.8723 -2.5430 -0.0090 8 6 3.1015 -3.3637 -0.4176 9 1 3.3146 -3.1940 -1.4730 10 6 2.8268 -4.8279 -0.1904 11 8 1.7566 -5.1817 0.2573 12 7 3.7703 -5.7442 -0.4846 13 6 3.5030 -7.1677 -0.2642 14 1 2.8815 -7.2683 0.6256 15 6 4.8297 -7.8763 -0.0112 16 6 4.5014 -9.0175 0.9102 17 6 4.3354 -10.3343 0.1127 18 6 3.6068 -10.0588 -1.2262 19 7 2.5042 -9.1434 -1.1673 20 6 1.2404 -9.5931 -0.8919 21 1 0.9781 -10.6217 -1.0905 22 6 0.2964 -8.7268 -0.3576 23 7 0.6842 -7.6361 0.2687 24 14 -1.5241 -9.1092 -0.5275 25 1 -1.6949 -10.3852 -1.2678 26 1 -2.1314 -9.2352 0.8217 27 1 -2.1931 -8.0116 -1.2710 28 6 2.7582 -7.6837 -1.4120 29 6 4.3082 -2.9350 0.4217 30 6 4.7469 -1.5242 0.0067 31 1 -0.3633 -0.0005 1.0276 32 1 -0.3632 0.8903 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 1.5465 -2.8430 0.9870 35 1 1.0663 -2.7067 -0.7244 36 1 4.6261 -5.4613 -0.8430 37 1 5.2419 -8.2513 -0.9480 38 1 5.5350 -7.1969 0.4677 39 1 3.5730 -8.7983 1.4378 40 1 5.3063 -9.1365 1.6355 41 1 3.7531 -11.0427 0.7019 42 1 5.3192 -10.7570 -0.0916 43 1 3.2394 -11.0086 -1.6147 44 1 4.3377 -9.6652 -1.9326 45 1 0.0246 -7.0306 0.6418 46 1 1.8103 -7.1539 -1.5065 47 1 3.3457 -7.5577 -2.3214 48 1 5.1297 -3.6328 0.2593 49 1 4.0351 -2.9354 1.4768 50 1 5.1853 -1.5535 -0.9909 51 1 5.4787 -1.1434 0.7191 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034373723.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:22 Heat of formation + Delta-G solvation = 89.654291 kcal Electronic energy + Delta-G solvation = -32298.848302 eV Core-core repulsion = 28236.181975 eV Total energy + Delta-G solvation = -4062.666327 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.47393 -39.69293 -37.90214 -36.29192 -34.97868 -34.04843 -33.13495 -30.95076 -30.62489 -30.57568 -29.30446 -27.96446 -26.11939 -24.71009 -24.16340 -23.37138 -22.56487 -21.49057 -20.47871 -19.85594 -19.35187 -18.71353 -17.35876 -16.99478 -16.63486 -16.21009 -15.56233 -15.00607 -14.72325 -14.56596 -14.24559 -14.00087 -13.91233 -13.77421 -13.57848 -13.44546 -13.34255 -13.02853 -12.84804 -12.45933 -12.28706 -12.11770 -11.92676 -11.83472 -11.59369 -11.33977 -11.26170 -11.19028 -11.00273 -10.73604 -10.65449 -10.57954 -10.20228 -10.12941 -10.05240 -9.80711 -9.76578 -9.52939 -9.38950 -8.95554 -8.83752 -8.45192 -8.11795 -6.62815 -5.62154 -3.05311 1.48334 2.21913 2.46159 3.35831 3.43231 3.52467 3.53890 3.70779 4.11531 4.37387 4.56326 4.61279 4.72189 4.73706 4.81135 4.83690 5.03786 5.14846 5.32787 5.37111 5.40942 5.45006 5.50452 5.56528 5.62107 5.67911 5.79413 5.82391 5.84470 5.92874 5.98205 6.12288 6.12643 6.18298 6.21972 6.32154 6.41169 6.47120 6.53825 6.60697 6.86699 6.95168 6.99814 7.09718 7.19198 7.30292 7.60967 7.65880 7.94401 8.31708 8.42716 8.53195 9.03142 9.31171 9.95748 10.48293 11.42527 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013289 B = 0.003266 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.483816 B = 8571.850632 C =10335.800510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.285 5.285 3 N -0.104 5.104 4 N -0.264 5.264 5 C -0.025 4.025 6 C -0.009 4.009 7 C -0.025 4.025 8 C -0.103 4.103 9 H 0.095 0.905 10 C 0.499 3.501 11 O -0.485 6.485 12 N -0.732 5.732 13 C 0.129 3.871 14 H 0.129 0.871 15 C -0.122 4.122 16 C -0.105 4.105 17 C -0.145 4.145 18 C 0.157 3.843 19 N -0.581 5.581 20 C -0.276 4.276 21 H 0.065 0.935 22 C 0.012 3.988 23 N -0.858 5.858 24 Si 0.887 3.113 25 H -0.281 1.281 26 H -0.294 1.294 27 H -0.292 1.292 28 C 0.159 3.841 29 C -0.109 4.109 30 C -0.030 4.030 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.382 0.618 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.036 0.964 41 H 0.051 0.949 42 H 0.041 0.959 43 H 0.031 0.969 44 H 0.025 0.975 45 H 0.260 0.740 46 H 0.093 0.907 47 H 0.003 0.997 48 H 0.081 0.919 49 H 0.073 0.927 50 H 0.084 0.916 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.934 10.736 -0.836 12.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.077 5.077 3 N -0.082 5.082 4 N -0.129 5.129 5 C -0.165 4.165 6 C -0.143 4.143 7 C -0.064 4.064 8 C -0.126 4.126 9 H 0.113 0.887 10 C 0.282 3.718 11 O -0.357 6.357 12 N -0.384 5.384 13 C 0.026 3.974 14 H 0.147 0.853 15 C -0.160 4.160 16 C -0.143 4.143 17 C -0.186 4.186 18 C 0.028 3.972 19 N -0.302 5.302 20 C -0.405 4.405 21 H 0.083 0.917 22 C -0.190 4.190 23 N -0.499 5.499 24 Si 0.717 3.283 25 H -0.207 1.207 26 H -0.221 1.221 27 H -0.219 1.219 28 C 0.034 3.966 29 C -0.147 4.147 30 C -0.069 4.069 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.214 0.786 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.050 0.950 44 H 0.044 0.956 45 H 0.071 0.929 46 H 0.112 0.888 47 H 0.021 0.979 48 H 0.100 0.900 49 H 0.092 0.908 50 H 0.102 0.898 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.965 12.184 -0.425 13.572 hybrid contribution -0.815 -1.010 -0.153 1.307 sum 5.149 11.174 -0.578 12.317 Atomic orbital electron populations 1.22297 0.72699 1.05995 1.05206 1.46816 1.09210 1.04648 1.46992 1.78547 0.96122 1.11396 1.22146 1.74760 1.09680 1.12057 1.16384 1.21687 0.95089 0.91275 1.08443 1.21983 0.91173 0.92508 1.08622 1.19925 0.98001 0.84055 1.04459 1.21350 0.95614 0.93719 1.01880 0.88658 1.20138 0.85369 0.86582 0.79727 1.90921 1.22720 1.80551 1.41500 1.46447 1.16958 1.08224 1.66788 1.21172 0.95088 0.76155 1.04983 0.85324 1.21386 0.97100 0.97690 0.99872 1.21318 1.00939 0.94825 0.97198 1.22914 0.98572 0.96703 1.00422 1.20413 0.89737 0.93791 0.93227 1.44036 1.03164 1.01992 1.81001 1.19041 0.86645 0.96778 1.38022 0.91715 1.24967 0.97765 0.98331 0.97942 1.69858 1.32558 1.12767 1.34766 0.86497 0.87246 0.77427 0.77137 1.20668 1.22078 1.21898 1.20410 0.99441 0.84983 0.91786 1.21633 0.97022 0.95627 1.00449 1.19960 0.92437 0.91553 1.02927 0.88915 0.88073 0.88021 0.88358 0.89560 0.78648 0.92094 0.92861 0.90684 0.94526 0.93063 0.93991 0.95040 0.95646 0.92851 0.88841 0.97923 0.90010 0.90782 0.89813 0.89628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 11.27 59.85 0.67 1.25 16 2 N -0.28 -3.40 3.73 -64.01 -0.24 -3.64 16 3 N -0.10 -1.51 13.19 60.35 0.80 -0.71 16 4 N -0.26 -3.99 12.40 33.17 0.41 -3.58 16 5 C -0.02 -0.32 7.11 -83.12 -0.59 -0.91 16 6 C -0.01 -0.11 6.77 -82.50 -0.56 -0.66 16 7 C -0.02 -0.30 4.71 -27.79 -0.13 -0.43 16 8 C -0.10 -1.21 2.49 -91.53 -0.23 -1.44 16 9 H 0.10 1.01 8.12 -51.93 -0.42 0.59 16 10 C 0.50 8.04 6.99 -10.99 -0.08 7.96 16 11 O -0.49 -10.17 13.10 5.55 0.07 -10.09 16 12 N -0.73 -11.23 4.72 -57.22 -0.27 -11.50 16 13 C 0.13 2.48 1.82 -71.39 -0.13 2.35 16 14 H 0.13 3.08 4.61 -51.93 -0.24 2.84 16 15 C -0.12 -2.01 5.24 -28.32 -0.15 -2.16 16 16 C -0.10 -1.88 5.66 -27.10 -0.15 -2.04 16 17 C -0.14 -2.62 6.41 -24.76 -0.16 -2.78 16 18 C 0.16 3.18 5.18 -4.67 -0.02 3.16 16 19 N -0.58 -13.74 2.60 -175.09 -0.45 -14.19 16 20 C -0.28 -7.32 9.61 -15.06 -0.14 -7.46 16 21 H 0.07 1.74 7.90 -52.49 -0.41 1.33 16 22 C 0.01 0.31 4.85 -17.43 -0.08 0.23 16 23 N -0.86 -23.24 7.78 55.49 0.43 -22.81 16 24 Si 0.89 21.48 29.60 -169.99 -5.03 16.45 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 C 0.16 3.51 4.63 -5.20 -0.02 3.48 16 29 C -0.11 -1.06 5.18 -26.43 -0.14 -1.20 16 30 C -0.03 -0.29 6.30 -27.69 -0.17 -0.46 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.61 7.71 -51.93 -0.40 0.21 16 34 H 0.10 1.29 7.77 -51.93 -0.40 0.88 16 35 H 0.09 1.02 7.87 -51.93 -0.41 0.61 16 36 H 0.38 4.50 7.92 -40.82 -0.32 4.18 16 37 H 0.06 0.97 6.27 -51.93 -0.33 0.65 16 38 H 0.05 0.75 8.03 -51.92 -0.42 0.34 16 39 H 0.07 1.63 6.82 -51.93 -0.35 1.28 16 40 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.03 0.64 7.99 -51.93 -0.41 0.23 16 44 H 0.03 0.47 6.87 -51.92 -0.36 0.12 16 45 H 0.26 7.21 8.06 -40.82 -0.33 6.88 16 46 H 0.09 2.42 5.79 -51.93 -0.30 2.12 16 47 H 0.00 0.06 8.12 -51.93 -0.42 -0.37 16 48 H 0.08 0.67 7.31 -51.93 -0.38 0.29 16 49 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 50 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 51 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 384.92 15.07 5.80 5.80 Total: -1.00 -32.35 384.92 -8.66 -41.01 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -8.09 Total: 4.39 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -2.09 Total: -1.11 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.68 Total: -56.44 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.07 Total: -10.09 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.35 -8.66 -41.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034373723.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.662 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds