Wall clock time and date at job start Wed Apr 1 2020 05:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.29104 * 126.00151 * 2 1 4 4 N 1.29029 * 110.25694 * 179.97438 * 3 2 1 5 5 C 1.32902 * 108.63300 * 0.40016 * 4 3 2 6 6 C 1.34394 * 126.01056 * 180.31116 * 2 1 3 7 7 C 1.50537 * 129.25451 * 359.75132 * 6 2 1 8 8 C 1.53435 * 108.32368 * 196.54141 * 7 6 2 9 9 H 1.09006 * 109.44647 * 70.29670 * 8 7 6 10 10 C 1.50701 * 109.45769 * 190.25274 * 8 7 6 11 11 O 1.21279 * 119.99677 * 0.08295 * 10 8 7 12 12 N 1.34770 * 120.00046 * 180.02562 * 10 8 7 13 13 C 1.46497 * 119.99888 * 180.02562 * 12 10 8 14 14 H 1.09002 * 109.36882 * 34.74778 * 13 12 10 15 15 C 1.50882 * 109.36674 * 154.36237 * 13 12 10 16 16 C 1.52563 * 109.36034 * 212.07819 * 15 13 12 17 17 C 1.47093 * 114.32771 * 274.98882 * 16 15 13 18 18 C 1.54866 * 110.32189 * 62.79722 * 17 16 15 19 19 N 1.44575 * 109.60270 * 288.73704 * 18 17 16 20 20 C 1.36942 * 118.63928 * 270.74660 * 19 18 17 21 21 H 1.08003 * 119.99771 * 139.21042 * 20 19 18 22 22 C 1.38803 * 120.00131 * 319.20665 * 20 19 18 23 23 N 1.31622 * 119.99873 * 156.29300 * 22 20 19 24 24 Si 1.86800 * 120.00493 * 336.29261 * 22 20 19 25 25 H 1.48504 * 109.47008 * 95.53167 * 24 22 20 26 26 H 1.48494 * 109.47514 * 215.53354 * 24 22 20 27 27 H 1.48505 * 109.46796 * 335.53387 * 24 22 20 28 28 C 1.47600 * 122.71259 * 90.72325 * 19 18 17 29 29 C 1.53107 * 109.55320 * 310.27847 * 8 7 6 30 30 C 1.50600 * 129.16318 * 179.65278 * 5 4 3 31 31 H 1.08995 * 109.47221 * 269.68528 * 1 2 3 32 32 H 1.08999 * 109.46950 * 149.69103 * 1 2 3 33 33 H 1.08994 * 109.47402 * 29.69033 * 1 2 3 34 34 H 1.09005 * 109.68718 * 316.24179 * 7 6 2 35 35 H 1.08993 * 109.69577 * 76.82367 * 7 6 2 36 36 H 0.96999 * 120.00230 * 0.02562 * 12 10 8 37 37 H 1.08995 * 109.49019 * 332.04684 * 15 13 12 38 38 H 1.09006 * 109.49167 * 92.11556 * 15 13 12 39 39 H 1.09005 * 108.51747 * 153.73397 * 16 15 13 40 40 H 1.09004 * 108.51374 * 36.23878 * 16 15 13 41 41 H 1.08999 * 109.32534 * 302.53392 * 17 16 15 42 42 H 1.09006 * 109.32877 * 183.06185 * 17 16 15 43 43 H 1.09006 * 109.44817 * 168.69337 * 18 17 16 44 44 H 1.08997 * 109.42595 * 48.76483 * 18 17 16 45 45 H 0.96995 * 120.00450 * 180.02562 * 23 22 20 46 46 H 1.09001 * 108.94666 * 197.17911 * 28 19 18 47 47 H 1.09009 * 108.94390 * 78.55871 * 28 19 18 48 48 H 1.08994 * 109.45311 * 310.03522 * 29 8 7 49 49 H 1.08995 * 109.43531 * 190.08664 * 29 8 7 50 50 H 1.09000 * 109.68800 * 316.24574 * 30 5 4 51 51 H 1.09005 * 109.68739 * 76.78023 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2239 1.0445 0.0000 4 7 3.4658 0.6943 0.0005 5 6 3.5328 -0.6330 -0.0079 6 6 2.2552 -1.0871 -0.0059 7 6 1.8723 -2.5430 -0.0088 8 6 3.1014 -3.3658 0.3993 9 1 3.3137 -3.2015 1.4558 10 6 2.8267 -4.8288 0.1641 11 8 1.7568 -5.1801 -0.2861 12 7 3.7705 -5.7465 0.4529 13 6 3.5037 -7.1687 0.2238 14 1 2.8787 -7.2810 -0.6622 15 6 4.8088 -7.8941 0.0073 16 6 4.5881 -9.0553 -0.9573 17 6 4.1120 -10.2917 -0.3184 18 6 2.7241 -10.0623 0.3294 19 7 2.8673 -9.2252 1.4994 20 6 3.1038 -9.8224 2.7088 21 1 3.8120 -9.3856 3.3974 22 6 2.4334 -10.9890 3.0497 23 7 2.9510 -11.8094 3.9394 24 14 0.7968 -11.3948 2.2459 25 1 1.0240 -12.2972 1.0885 26 1 -0.0859 -12.0678 3.2323 27 1 0.1512 -10.1421 1.7776 28 6 2.7696 -7.7534 1.4440 29 6 4.3086 -2.9326 -0.4369 30 6 4.7469 -1.5240 -0.0180 31 1 -0.3633 -0.0056 1.0276 32 1 -0.3633 -0.8872 -0.5186 33 1 -0.3634 0.8927 -0.5090 34 1 1.0645 -2.7116 0.7034 35 1 1.5491 -2.8359 -1.0076 36 1 4.6264 -5.4655 0.8125 37 1 5.5419 -7.2060 -0.4135 38 1 5.1743 -8.2773 0.9601 39 1 5.5295 -9.2680 -1.4641 40 1 3.8575 -8.7492 -1.7060 41 1 4.8225 -10.5976 0.4496 42 1 4.0344 -11.0787 -1.0685 43 1 2.2961 -11.0218 0.6198 44 1 2.0654 -9.5734 -0.3883 45 1 2.4828 -12.6248 4.1774 46 1 3.2038 -7.3355 2.3522 47 1 1.7181 -7.4703 1.3937 48 1 4.0362 -2.9277 -1.4923 49 1 5.1299 -3.6312 -0.2772 50 1 5.4788 -1.1392 -0.7281 51 1 5.1856 -1.5581 0.9793 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034373726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:37 Heat of formation + Delta-G solvation = 75.865120 kcal Electronic energy + Delta-G solvation = -31427.685674 eV Core-core repulsion = 27364.421403 eV Total energy + Delta-G solvation = -4063.264270 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.68007 -40.23516 -38.21109 -36.78140 -35.20404 -34.77713 -33.45128 -31.45439 -31.11711 -30.90773 -29.80807 -28.16617 -26.29665 -25.20152 -24.46114 -23.62727 -22.74341 -21.71484 -20.86660 -20.31178 -19.53436 -19.51228 -17.67896 -17.20946 -16.66452 -16.65514 -16.28591 -15.46542 -15.16499 -15.03232 -14.69370 -14.28681 -14.19679 -14.15013 -13.74297 -13.63623 -13.58566 -13.20719 -13.18717 -13.04662 -12.87366 -12.49588 -12.31745 -12.24943 -11.82364 -11.73250 -11.59134 -11.50088 -11.34352 -11.20555 -10.83399 -10.81983 -10.51139 -10.36545 -10.24941 -10.17530 -10.08494 -9.74107 -9.69867 -9.52564 -9.12479 -8.94147 -8.46694 -6.76097 -6.03404 -3.45816 1.27510 2.01732 2.27217 2.62257 3.12084 3.31597 3.46726 3.55138 3.83369 4.11421 4.27282 4.42864 4.43797 4.51956 4.55180 4.56877 4.81552 4.86443 4.89572 5.04527 5.10527 5.11475 5.19626 5.22676 5.27139 5.34110 5.48781 5.50334 5.54695 5.64395 5.70649 5.73503 5.78009 5.81558 5.94938 5.96195 6.18931 6.23240 6.26378 6.35653 6.40124 6.54348 6.62359 6.64334 6.73318 6.83581 6.89697 7.11339 7.57316 8.07951 8.23927 8.24672 8.36917 9.03006 9.70170 10.08595 11.11820 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018250 B = 0.002426 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.874229 B =11541.092350 C =12254.653336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.284 5.284 3 N -0.100 5.100 4 N -0.262 5.262 5 C -0.022 4.022 6 C -0.014 4.014 7 C -0.025 4.025 8 C -0.102 4.102 9 H 0.106 0.894 10 C 0.519 3.481 11 O -0.539 6.539 12 N -0.717 5.717 13 C 0.129 3.871 14 H 0.081 0.919 15 C -0.116 4.116 16 C -0.099 4.099 17 C -0.144 4.144 18 C 0.145 3.855 19 N -0.598 5.598 20 C -0.274 4.274 21 H 0.075 0.925 22 C 0.041 3.959 23 N -0.897 5.897 24 Si 0.874 3.126 25 H -0.285 1.285 26 H -0.301 1.301 27 H -0.269 1.269 28 C 0.142 3.858 29 C -0.111 4.111 30 C -0.030 4.030 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.399 0.601 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.034 0.966 45 H 0.263 0.737 46 H 0.058 0.942 47 H 0.023 0.977 48 H 0.075 0.925 49 H 0.084 0.916 50 H 0.089 0.911 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.971 19.458 -10.260 22.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.075 5.075 3 N -0.077 5.077 4 N -0.127 5.127 5 C -0.162 4.162 6 C -0.148 4.148 7 C -0.065 4.065 8 C -0.124 4.124 9 H 0.124 0.876 10 C 0.304 3.696 11 O -0.415 6.415 12 N -0.368 5.368 13 C 0.024 3.976 14 H 0.099 0.901 15 C -0.154 4.154 16 C -0.137 4.137 17 C -0.184 4.184 18 C 0.019 3.981 19 N -0.322 5.322 20 C -0.402 4.402 21 H 0.092 0.908 22 C -0.160 4.160 23 N -0.537 5.537 24 Si 0.704 3.296 25 H -0.213 1.213 26 H -0.229 1.229 27 H -0.194 1.194 28 C 0.016 3.984 29 C -0.149 4.149 30 C -0.070 4.070 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.233 0.767 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.052 0.948 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.041 0.959 48 H 0.094 0.906 49 H 0.103 0.897 50 H 0.107 0.893 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.150 20.659 -10.478 23.165 hybrid contribution -0.886 -1.285 -0.101 1.565 sum -0.736 19.374 -10.580 22.086 Atomic orbital electron populations 1.22312 0.72617 1.06088 1.05262 1.46831 1.09254 1.04586 1.46873 1.78585 0.96116 1.11293 1.21754 1.74791 1.09637 1.11958 1.16268 1.21687 0.94990 0.91376 1.08188 1.21855 0.91235 0.92308 1.09416 1.19921 0.97761 0.84458 1.04351 1.21336 0.96293 0.91966 1.02852 0.87602 1.20291 0.84258 0.87379 0.77681 1.90719 1.24308 1.81833 1.44680 1.46173 1.17721 1.07155 1.65773 1.21489 0.97556 0.78122 1.00408 0.90084 1.21282 0.95604 0.96815 1.01686 1.20234 1.00135 0.95745 0.97539 1.21377 1.01282 0.96020 0.99746 1.21107 0.93700 0.94883 0.88407 1.43752 1.84410 0.99638 1.04378 1.18740 1.19402 1.07613 0.94488 0.90760 1.25497 0.97475 0.97017 0.96015 1.69886 1.37853 1.10918 1.35083 0.86970 0.86472 0.78215 0.77966 1.21291 1.22902 1.19363 1.21548 0.96933 0.84827 0.95085 1.21644 0.96687 0.96219 1.00361 1.19939 0.92551 0.91164 1.03305 0.88833 0.88069 0.87912 0.89343 0.88465 0.76700 0.92626 0.89812 0.93319 0.93346 0.90998 0.93299 0.92952 0.94789 0.92698 0.92373 0.95943 0.90606 0.89749 0.89278 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.38 11.27 59.85 0.67 1.06 16 2 N -0.28 -2.74 3.73 -64.01 -0.24 -2.98 16 3 N -0.10 -1.25 13.19 60.35 0.80 -0.45 16 4 N -0.26 -3.46 12.40 33.16 0.41 -3.05 16 5 C -0.02 -0.24 7.11 -83.12 -0.59 -0.83 16 6 C -0.01 -0.14 6.76 -82.50 -0.56 -0.69 16 7 C -0.03 -0.22 4.68 -27.74 -0.13 -0.35 16 8 C -0.10 -0.86 2.50 -91.49 -0.23 -1.09 16 9 H 0.11 0.78 8.12 -51.93 -0.42 0.36 16 10 C 0.52 6.19 7.12 -10.99 -0.08 6.11 16 11 O -0.54 -8.62 15.47 5.56 0.09 -8.54 16 12 N -0.72 -8.24 4.79 -54.37 -0.26 -8.50 16 13 C 0.13 1.95 2.28 -68.50 -0.16 1.80 16 14 H 0.08 1.36 6.73 -51.93 -0.35 1.01 16 15 C -0.12 -1.63 5.07 -28.02 -0.14 -1.77 16 16 C -0.10 -1.46 5.15 -29.79 -0.15 -1.61 16 17 C -0.14 -2.59 5.74 -28.58 -0.16 -2.75 16 18 C 0.15 3.09 4.52 -4.09 -0.02 3.07 16 19 N -0.60 -13.58 1.79 -172.09 -0.31 -13.89 16 20 C -0.27 -7.33 9.66 -15.06 -0.15 -7.48 16 21 H 0.07 2.14 8.06 -52.48 -0.42 1.72 16 22 C 0.04 1.16 5.22 -17.43 -0.09 1.06 16 23 N -0.90 -26.69 13.97 55.49 0.78 -25.92 16 24 Si 0.87 22.07 25.29 -169.99 -4.30 17.77 16 25 H -0.29 -6.99 6.70 56.52 0.38 -6.61 16 26 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 27 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 28 C 0.14 2.76 5.83 -2.95 -0.02 2.75 16 29 C -0.11 -0.74 5.17 -26.49 -0.14 -0.88 16 30 C -0.03 -0.22 6.30 -27.74 -0.17 -0.40 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.10 0.34 7.96 -51.93 -0.41 -0.08 16 33 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.10 0.89 7.78 -51.93 -0.40 0.49 16 36 H 0.40 3.39 7.88 -40.82 -0.32 3.07 16 37 H 0.06 0.63 7.95 -51.93 -0.41 0.22 16 38 H 0.08 1.38 7.48 -51.93 -0.39 0.99 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.69 7.36 -51.93 -0.38 0.31 16 41 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.05 1.23 3.59 -51.93 -0.19 1.05 16 44 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 46 H 0.06 1.13 7.87 -51.93 -0.41 0.72 16 47 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 48 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 49 H 0.08 0.43 7.30 -51.93 -0.38 0.05 16 50 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 51 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 391.76 15.07 5.90 5.90 Total: -1.00 -34.92 391.76 -7.54 -42.46 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -8.29 Total: -0.81 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -2.11 Total: -2.01 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 1.18 Total: -54.78 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.09 Total: -8.54 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.30 Total: 17.77 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.92 -7.54 -42.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034373726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.326 kcal (2) G-P(sol) polarization free energy of solvation -34.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds