Wall clock time and date at job start Wed Apr 1 2020 05:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.29104 * 126.00151 * 2 1 4 4 N 1.29029 * 110.25694 * 179.97438 * 3 2 1 5 5 C 1.32902 * 108.63300 * 0.40016 * 4 3 2 6 6 C 1.34394 * 126.01056 * 180.31116 * 2 1 3 7 7 C 1.50537 * 129.25451 * 359.75132 * 6 2 1 8 8 C 1.53435 * 108.32368 * 196.54141 * 7 6 2 9 9 H 1.09006 * 109.44647 * 70.29670 * 8 7 6 10 10 C 1.50701 * 109.45769 * 190.25274 * 8 7 6 11 11 O 1.21279 * 119.99677 * 0.08295 * 10 8 7 12 12 N 1.34770 * 120.00046 * 180.02562 * 10 8 7 13 13 C 1.46497 * 119.99888 * 180.02562 * 12 10 8 14 14 H 1.09002 * 109.36882 * 34.74778 * 13 12 10 15 15 C 1.50882 * 109.36674 * 154.36237 * 13 12 10 16 16 C 1.52563 * 109.36034 * 212.07819 * 15 13 12 17 17 C 1.47093 * 114.32771 * 274.98882 * 16 15 13 18 18 C 1.54866 * 110.32189 * 62.79722 * 17 16 15 19 19 N 1.44575 * 109.60270 * 288.73704 * 18 17 16 20 20 C 1.36942 * 118.63928 * 270.74660 * 19 18 17 21 21 H 1.08003 * 119.99771 * 139.21042 * 20 19 18 22 22 C 1.38803 * 120.00131 * 319.20665 * 20 19 18 23 23 N 1.31622 * 119.99873 * 156.29300 * 22 20 19 24 24 Si 1.86800 * 120.00493 * 336.29261 * 22 20 19 25 25 H 1.48504 * 109.47008 * 95.53167 * 24 22 20 26 26 H 1.48494 * 109.47514 * 215.53354 * 24 22 20 27 27 H 1.48505 * 109.46796 * 335.53387 * 24 22 20 28 28 C 1.47600 * 122.71259 * 90.72325 * 19 18 17 29 29 C 1.53107 * 109.55320 * 310.27847 * 8 7 6 30 30 C 1.50600 * 129.16318 * 179.65278 * 5 4 3 31 31 H 1.08995 * 109.47221 * 269.68528 * 1 2 3 32 32 H 1.08999 * 109.46950 * 149.69103 * 1 2 3 33 33 H 1.08994 * 109.47402 * 29.69033 * 1 2 3 34 34 H 1.09005 * 109.68718 * 316.24179 * 7 6 2 35 35 H 1.08993 * 109.69577 * 76.82367 * 7 6 2 36 36 H 0.96999 * 120.00230 * 0.02562 * 12 10 8 37 37 H 1.08995 * 109.49019 * 332.04684 * 15 13 12 38 38 H 1.09006 * 109.49167 * 92.11556 * 15 13 12 39 39 H 1.09005 * 108.51747 * 153.73397 * 16 15 13 40 40 H 1.09004 * 108.51374 * 36.23878 * 16 15 13 41 41 H 1.08999 * 109.32534 * 302.53392 * 17 16 15 42 42 H 1.09006 * 109.32877 * 183.06185 * 17 16 15 43 43 H 1.09006 * 109.44817 * 168.69337 * 18 17 16 44 44 H 1.08997 * 109.42595 * 48.76483 * 18 17 16 45 45 H 0.96995 * 120.00450 * 180.02562 * 23 22 20 46 46 H 1.09001 * 108.94666 * 197.17911 * 28 19 18 47 47 H 1.09009 * 108.94390 * 78.55871 * 28 19 18 48 48 H 1.08994 * 109.45311 * 310.03522 * 29 8 7 49 49 H 1.08995 * 109.43531 * 190.08664 * 29 8 7 50 50 H 1.09000 * 109.68800 * 316.24574 * 30 5 4 51 51 H 1.09005 * 109.68739 * 76.78023 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2239 1.0445 0.0000 4 7 3.4658 0.6943 0.0005 5 6 3.5328 -0.6330 -0.0079 6 6 2.2552 -1.0871 -0.0059 7 6 1.8723 -2.5430 -0.0088 8 6 3.1014 -3.3658 0.3993 9 1 3.3137 -3.2015 1.4558 10 6 2.8267 -4.8288 0.1641 11 8 1.7568 -5.1801 -0.2861 12 7 3.7705 -5.7465 0.4529 13 6 3.5037 -7.1687 0.2238 14 1 2.8787 -7.2810 -0.6622 15 6 4.8088 -7.8941 0.0073 16 6 4.5881 -9.0553 -0.9573 17 6 4.1120 -10.2917 -0.3184 18 6 2.7241 -10.0623 0.3294 19 7 2.8673 -9.2252 1.4994 20 6 3.1038 -9.8224 2.7088 21 1 3.8120 -9.3856 3.3974 22 6 2.4334 -10.9890 3.0497 23 7 2.9510 -11.8094 3.9394 24 14 0.7968 -11.3948 2.2459 25 1 1.0240 -12.2972 1.0885 26 1 -0.0859 -12.0678 3.2323 27 1 0.1512 -10.1421 1.7776 28 6 2.7696 -7.7534 1.4440 29 6 4.3086 -2.9326 -0.4369 30 6 4.7469 -1.5240 -0.0180 31 1 -0.3633 -0.0056 1.0276 32 1 -0.3633 -0.8872 -0.5186 33 1 -0.3634 0.8927 -0.5090 34 1 1.0645 -2.7116 0.7034 35 1 1.5491 -2.8359 -1.0076 36 1 4.6264 -5.4655 0.8125 37 1 5.5419 -7.2060 -0.4135 38 1 5.1743 -8.2773 0.9601 39 1 5.5295 -9.2680 -1.4641 40 1 3.8575 -8.7492 -1.7060 41 1 4.8225 -10.5976 0.4496 42 1 4.0344 -11.0787 -1.0685 43 1 2.2961 -11.0218 0.6198 44 1 2.0654 -9.5734 -0.3883 45 1 2.4828 -12.6248 4.1774 46 1 3.2038 -7.3355 2.3522 47 1 1.7181 -7.4703 1.3937 48 1 4.0362 -2.9277 -1.4923 49 1 5.1299 -3.6312 -0.2772 50 1 5.4788 -1.1392 -0.7281 51 1 5.1856 -1.5581 0.9793 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034373726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:36 Heat of formation + Delta-G solvation = 51.879884 kcal Electronic energy + Delta-G solvation = -31428.725752 eV Core-core repulsion = 27364.421403 eV Total energy + Delta-G solvation = -4064.304348 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.43406 -41.25146 -39.55082 -37.60558 -36.21194 -35.85799 -34.95446 -33.34824 -32.23612 -31.51852 -30.83975 -28.73709 -28.00508 -26.40514 -25.65856 -24.55414 -24.09620 -22.40478 -22.01084 -21.38038 -21.01717 -20.36677 -18.59449 -18.45239 -17.91454 -17.72222 -17.44679 -16.84614 -16.47540 -16.11975 -15.70096 -15.49554 -15.07562 -14.88134 -14.84938 -14.75980 -14.66511 -14.49100 -14.32331 -14.12175 -13.80091 -13.68837 -13.47561 -13.20457 -13.10917 -13.02175 -12.81406 -12.61952 -12.52693 -12.18086 -12.10777 -11.95427 -11.92230 -11.70704 -11.62154 -11.51558 -11.39530 -11.17959 -10.95194 -10.77332 -10.59607 -10.03779 -9.86424 -8.65727 -8.21230 -5.58901 0.52931 1.28494 1.39222 1.42877 1.47894 1.50611 1.68181 2.17136 2.41235 3.05543 3.15862 3.37156 3.49275 3.73167 3.78737 3.79344 3.88963 3.95013 4.03185 4.16032 4.23339 4.25422 4.30581 4.33397 4.38192 4.45776 4.52525 4.56180 4.56926 4.68687 4.73642 4.87118 4.90111 4.92135 4.92691 5.01524 5.06294 5.10822 5.11991 5.23869 5.29120 5.31933 5.34901 5.41785 5.44374 5.60250 5.63962 5.66364 5.98512 6.19084 6.65593 7.05660 7.33759 7.44542 7.67271 8.05072 8.98146 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018250 B = 0.002426 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.874229 B =11541.092350 C =12254.653336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.279 5.279 3 N -0.130 5.130 4 N -0.299 5.299 5 C -0.032 4.032 6 C -0.015 4.015 7 C -0.020 4.020 8 C -0.093 4.093 9 H 0.122 0.878 10 C 0.521 3.479 11 O -0.580 6.580 12 N -0.706 5.706 13 C 0.146 3.854 14 H 0.072 0.928 15 C -0.109 4.109 16 C -0.100 4.100 17 C -0.134 4.134 18 C 0.136 3.864 19 N -0.606 5.606 20 C -0.256 4.256 21 H 0.045 0.955 22 C -0.010 4.010 23 N -0.941 5.941 24 Si 0.932 3.068 25 H -0.273 1.273 26 H -0.307 1.307 27 H -0.272 1.272 28 C 0.144 3.856 29 C -0.103 4.103 30 C -0.028 4.028 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.417 0.583 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.043 0.957 42 H 0.067 0.933 43 H 0.027 0.973 44 H 0.049 0.951 45 H 0.263 0.737 46 H 0.052 0.948 47 H 0.001 0.999 48 H 0.071 0.929 49 H 0.109 0.891 50 H 0.097 0.903 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.601 20.423 -12.198 23.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.071 5.071 3 N -0.108 5.108 4 N -0.162 5.162 5 C -0.173 4.173 6 C -0.150 4.150 7 C -0.059 4.059 8 C -0.115 4.115 9 H 0.140 0.860 10 C 0.308 3.692 11 O -0.459 6.459 12 N -0.358 5.358 13 C 0.040 3.960 14 H 0.090 0.910 15 C -0.147 4.147 16 C -0.138 4.138 17 C -0.174 4.174 18 C 0.011 3.989 19 N -0.330 5.330 20 C -0.386 4.386 21 H 0.062 0.938 22 C -0.208 4.208 23 N -0.585 5.585 24 Si 0.761 3.239 25 H -0.200 1.200 26 H -0.236 1.236 27 H -0.196 1.196 28 C 0.018 3.982 29 C -0.141 4.141 30 C -0.067 4.067 31 H 0.127 0.873 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.255 0.745 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.085 0.915 43 H 0.045 0.955 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.019 0.981 48 H 0.090 0.910 49 H 0.127 0.873 50 H 0.115 0.885 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.796 21.679 -12.442 25.008 hybrid contribution -1.112 -1.533 0.521 1.964 sum -0.317 20.146 -11.921 23.411 Atomic orbital electron populations 1.22717 0.70297 1.07573 1.06749 1.47199 1.10631 1.04024 1.45270 1.78505 0.96461 1.12442 1.23352 1.74741 1.10253 1.13492 1.17738 1.22298 0.96547 0.90955 1.07499 1.22031 0.91166 0.92659 1.09169 1.19885 0.98076 0.83749 1.04219 1.21306 0.96933 0.89054 1.04180 0.86002 1.20848 0.83357 0.88619 0.76355 1.90711 1.26061 1.82674 1.46483 1.45996 1.18656 1.05563 1.65628 1.21043 0.97548 0.80009 0.97381 0.91026 1.21224 0.95563 0.97273 1.00605 1.20232 1.01708 0.94231 0.97642 1.21258 0.98235 0.98546 0.99326 1.21214 0.96030 0.93487 0.88190 1.43829 1.84465 1.01171 1.03550 1.18658 1.17615 1.06974 0.95320 0.93769 1.26013 1.00069 0.97503 0.97184 1.69986 1.39188 1.11793 1.37552 0.86030 0.82695 0.77887 0.77272 1.19972 1.23563 1.19641 1.21602 0.96374 0.82902 0.97328 1.21632 0.96499 0.96282 0.99661 1.20063 0.91514 0.90662 1.04426 0.87308 0.86383 0.86734 0.89083 0.88898 0.74528 0.88604 0.92389 0.90606 0.92175 0.93796 0.91454 0.95492 0.93298 0.92825 0.92937 0.98110 0.90979 0.87290 0.88478 0.88092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 11.27 127.77 1.44 1.99 16 2 N -0.28 -5.10 3.73 -356.42 -1.33 -6.42 16 3 N -0.13 -3.22 13.19 37.02 0.49 -2.73 16 4 N -0.30 -7.75 12.40 -48.99 -0.61 -8.36 16 5 C -0.03 -0.63 7.11 41.75 0.30 -0.33 16 6 C -0.01 -0.27 6.76 41.50 0.28 0.01 16 7 C -0.02 -0.30 4.68 29.94 0.14 -0.16 16 8 C -0.09 -1.29 2.50 -11.36 -0.03 -1.31 16 9 H 0.12 1.38 8.12 -2.38 -0.02 1.36 16 10 C 0.52 11.10 7.12 87.66 0.62 11.72 16 11 O -0.58 -17.63 15.47 -3.02 -0.05 -17.67 16 12 N -0.71 -14.05 4.79 -444.31 -2.13 -16.17 16 13 C 0.15 4.08 2.28 44.62 0.10 4.18 16 14 H 0.07 2.22 6.73 -2.39 -0.02 2.20 16 15 C -0.11 -2.71 5.07 29.76 0.15 -2.56 16 16 C -0.10 -2.61 5.15 28.61 0.15 -2.47 16 17 C -0.13 -4.56 5.74 29.40 0.17 -4.39 16 18 C 0.14 5.65 4.52 87.38 0.39 6.04 16 19 N -0.61 -27.48 1.79 -698.37 -1.25 -28.73 16 20 C -0.26 -14.00 9.66 84.03 0.81 -13.19 16 21 H 0.04 2.65 8.06 -2.91 -0.02 2.63 16 22 C -0.01 -0.60 5.22 84.86 0.44 -0.16 16 23 N -0.94 -57.61 13.97 21.65 0.30 -57.30 16 24 Si 0.93 46.46 25.29 68.60 1.73 48.19 16 25 H -0.27 -12.92 6.70 99.48 0.67 -12.25 16 26 H -0.31 -15.48 7.11 99.48 0.71 -14.77 16 27 H -0.27 -13.47 7.11 99.48 0.71 -12.77 16 28 C 0.14 5.50 5.83 86.49 0.50 6.00 16 29 C -0.10 -1.01 5.17 30.75 0.16 -0.86 16 30 C -0.03 -0.33 6.30 29.94 0.19 -0.14 16 31 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.12 0.58 7.96 -2.39 -0.02 0.56 16 33 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.09 1.55 7.78 -2.39 -0.02 1.53 16 36 H 0.42 5.38 7.88 -92.71 -0.73 4.65 16 37 H 0.10 1.67 7.95 -2.39 -0.02 1.65 16 38 H 0.06 1.80 7.48 -2.38 -0.02 1.78 16 39 H 0.08 1.62 8.14 -2.38 -0.02 1.61 16 40 H 0.06 1.47 7.36 -2.38 -0.02 1.46 16 41 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 43 H 0.03 1.25 3.59 -2.38 -0.01 1.25 16 44 H 0.05 1.87 8.06 -2.39 -0.02 1.85 16 45 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 46 H 0.05 2.03 7.87 -2.39 -0.02 2.01 16 47 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 48 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 49 H 0.11 0.58 7.30 -2.39 -0.02 0.56 16 50 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -79.12 391.76 3.16 -75.96 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.17 Total: 8.85 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 5.82 Total: 4.39 kcal Atomic # 7 Polarization: -115.20 SS G_CDS: -4.52 Total: -119.72 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.05 Total: -17.67 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.73 Total: 48.19 kcal Total: -79.12 3.16 -75.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034373726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.841 kcal (2) G-P(sol) polarization free energy of solvation -79.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds