Wall clock time and date at job start Wed Apr 1 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40441 * 126.82673 * 2 1 4 4 C 1.30711 * 106.79715 * 180.26169 * 3 2 1 5 5 C 1.50696 * 125.53116 * 179.78732 * 4 3 2 6 6 C 1.52997 * 117.49825 * 8.57587 * 5 4 3 7 7 C 1.52995 * 60.00160 * 252.50897 * 6 5 4 8 8 N 1.33244 * 108.94463 * 359.74593 * 4 3 2 9 9 C 1.30836 * 109.82869 * 0.02562 * 8 4 3 10 10 C 1.50701 * 125.96286 * 180.02562 * 9 8 4 11 11 C 1.50701 * 109.47087 * 90.01930 * 10 9 8 12 12 O 1.21279 * 119.99983 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99992 * 180.02562 * 11 10 9 14 14 C 1.46493 * 120.00441 * 180.02562 * 13 11 10 15 15 H 1.09003 * 109.18411 * 34.55847 * 14 13 11 16 16 C 1.47089 * 109.33307 * 154.12845 * 14 13 11 17 17 C 1.52565 * 114.32525 * 183.06026 * 16 14 13 18 18 C 1.50880 * 109.36282 * 274.98808 * 17 16 14 19 19 C 1.53954 * 110.09370 * 91.88878 * 18 17 16 20 20 N 1.47583 * 112.11962 * 319.44928 * 19 18 17 21 21 C 1.36936 * 118.62322 * 137.87324 * 20 19 18 22 22 H 1.07998 * 119.99825 * 206.49894 * 21 20 19 23 23 C 1.38816 * 120.00147 * 26.50043 * 21 20 19 24 24 N 1.31620 * 120.00010 * 15.71271 * 23 21 20 25 25 Si 1.86801 * 120.00173 * 195.70570 * 23 21 20 26 26 H 1.48503 * 109.46821 * 60.00367 * 25 23 21 27 27 H 1.48503 * 109.47046 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47266 * 300.00250 * 25 23 21 29 29 C 1.44576 * 122.73176 * 317.82464 * 20 19 18 30 30 H 1.09000 * 109.47074 * 270.17535 * 1 2 3 31 31 H 1.08995 * 109.46910 * 30.17321 * 1 2 3 32 32 H 1.09004 * 109.47236 * 150.17033 * 1 2 3 33 33 H 1.09003 * 115.54929 * 154.28691 * 5 4 3 34 34 H 1.09000 * 117.49741 * 0.02562 * 6 5 4 35 35 H 1.09003 * 117.49883 * 145.02047 * 6 5 4 36 36 H 1.08998 * 117.50107 * 252.51193 * 7 6 5 37 37 H 1.09003 * 117.49371 * 107.48573 * 7 6 5 38 38 H 1.09004 * 109.46988 * 330.02063 * 10 9 8 39 39 H 1.09000 * 109.47068 * 210.01880 * 10 9 8 40 40 H 0.97006 * 119.99442 * 359.97438 * 13 11 10 41 41 H 1.08996 * 108.51420 * 304.31820 * 16 14 13 42 42 H 1.09009 * 108.50731 * 61.81200 * 16 14 13 43 43 H 1.09002 * 109.49257 * 34.95830 * 17 16 14 44 44 H 1.09003 * 109.49057 * 155.00675 * 17 16 14 45 45 H 1.09000 * 109.37192 * 212.07486 * 18 17 16 46 46 H 1.08995 * 109.36992 * 331.83055 * 18 17 16 47 47 H 1.09004 * 108.94957 * 80.11915 * 19 18 17 48 48 H 1.09000 * 108.94774 * 198.75505 * 19 18 17 49 49 H 0.97000 * 120.00099 * 179.97438 * 24 23 21 50 50 H 1.08998 * 109.44873 * 330.73458 * 29 20 19 51 51 H 1.09000 * 109.44670 * 210.79313 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1242 0.0000 4 6 3.5349 0.6765 -0.0057 5 6 4.7777 1.5287 -0.0125 6 6 4.6023 3.0351 0.1896 7 6 4.9713 2.4863 -1.1900 8 7 3.5096 -0.6557 -0.0037 9 6 2.2707 -1.0761 0.0028 10 6 1.8246 -2.5156 0.0075 11 6 1.6820 -2.9926 1.4299 12 8 1.9196 -2.2382 2.3492 13 7 1.2913 -4.2580 1.6803 14 6 1.1520 -4.7217 3.0630 15 1 0.7974 -3.8982 3.6829 16 6 0.1777 -5.8225 3.1116 17 6 -0.1105 -6.3450 4.5157 18 6 0.9286 -7.3729 4.8901 19 6 2.1020 -6.6964 5.6221 20 7 2.4631 -5.4007 5.0147 21 6 2.7477 -4.3459 5.8402 22 1 2.5959 -3.3339 5.4950 23 6 3.2313 -4.5773 7.1206 24 7 3.7070 -5.7622 7.4402 25 14 3.2070 -3.2071 8.3901 26 1 1.8078 -2.7611 8.6102 27 1 3.7737 -3.7068 9.6685 28 1 4.0196 -2.0646 7.9008 29 6 2.5297 -5.1993 3.5846 30 1 -0.3633 0.0031 1.0277 31 1 -0.3633 0.8884 -0.5165 32 1 -0.3634 -0.8915 -0.5112 33 1 5.6686 1.0642 0.4102 34 1 3.5881 3.4097 0.3279 35 1 5.3779 3.5620 0.7455 36 1 5.9896 2.6519 -1.5418 37 1 4.1996 2.4997 -1.9598 38 1 2.5650 -3.1271 -0.5083 39 1 0.8648 -2.6002 -0.5021 40 1 1.1016 -4.8615 0.9449 41 1 -0.7578 -5.4763 2.6723 42 1 0.5561 -6.6465 2.5066 43 1 -0.0767 -5.5184 5.2255 44 1 -1.0995 -6.8028 4.5375 45 1 0.4786 -8.1209 5.5428 46 1 1.2996 -7.8573 3.9870 47 1 1.8232 -6.5337 6.6632 48 1 2.9683 -7.3571 5.5884 49 1 4.0453 -5.9238 8.3349 50 1 2.7967 -6.1374 3.0980 51 1 3.2844 -4.4458 3.3590 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034535079.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:16 Heat of formation + Delta-G solvation = 102.929523 kcal Electronic energy + Delta-G solvation = -31216.985703 eV Core-core repulsion = 27154.895034 eV Total energy + Delta-G solvation = -4062.090670 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.22256 -39.70610 -37.75146 -37.29814 -34.59923 -33.98800 -33.25231 -32.69352 -30.92774 -30.29844 -28.72698 -27.35860 -25.92883 -24.27147 -23.83490 -23.13470 -22.54780 -21.31153 -20.29385 -20.11512 -19.66506 -19.16122 -17.25226 -17.13952 -16.57374 -16.13422 -15.81457 -15.49491 -15.31813 -14.90403 -14.65415 -14.47951 -13.90807 -13.68224 -13.64833 -13.50112 -13.35733 -13.11980 -12.64226 -12.56467 -12.37163 -12.23280 -12.10938 -11.81194 -11.63598 -11.51820 -11.03238 -11.01909 -10.90525 -10.74514 -10.67607 -10.56286 -10.14244 -10.12386 -9.96650 -9.85854 -9.71107 -9.64016 -9.57341 -9.56296 -9.20591 -8.85662 -8.29134 -6.60665 -5.71446 -3.14760 1.49016 2.18806 2.68371 2.77601 3.35170 3.46417 3.49873 3.54278 3.72961 3.84889 4.23901 4.33579 4.58600 4.64364 4.70717 4.81322 4.84172 4.93758 5.02077 5.13797 5.20630 5.22682 5.35109 5.44810 5.44926 5.46160 5.54165 5.64763 5.74044 5.93149 5.98040 5.99981 6.02180 6.12410 6.26374 6.29512 6.37563 6.40579 6.59036 6.61199 6.68278 6.68888 6.75922 6.82860 6.93072 7.10782 7.46926 7.70401 7.74888 7.95394 8.11002 8.42885 8.55366 9.32008 9.96917 10.40221 11.36271 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010832 B = 0.002963 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.276534 B = 9447.104852 C =11166.626744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.374 5.374 3 N -0.317 5.317 4 C 0.257 3.743 5 C -0.069 4.069 6 C -0.161 4.161 7 C -0.160 4.160 8 N -0.524 5.524 9 C 0.305 3.695 10 C -0.067 4.067 11 C 0.512 3.488 12 O -0.515 6.515 13 N -0.720 5.720 14 C 0.115 3.885 15 H 0.087 0.913 16 C -0.111 4.111 17 C -0.101 4.101 18 C -0.143 4.143 19 C 0.176 3.824 20 N -0.583 5.583 21 C -0.256 4.256 22 H 0.068 0.932 23 C 0.006 3.994 24 N -0.906 5.906 25 Si 0.900 3.100 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.158 3.842 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.130 0.870 39 H 0.112 0.888 40 H 0.393 0.607 41 H 0.046 0.954 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.047 0.953 45 H 0.052 0.948 46 H 0.044 0.956 47 H 0.075 0.925 48 H 0.025 0.975 49 H 0.253 0.747 50 H 0.031 0.969 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.606 6.153 -20.034 22.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.164 5.164 3 N -0.145 5.145 4 C -0.025 4.025 5 C -0.090 4.090 6 C -0.199 4.199 7 C -0.198 4.198 8 N -0.251 5.251 9 C 0.028 3.972 10 C -0.109 4.109 11 C 0.294 3.706 12 O -0.389 6.389 13 N -0.372 5.372 14 C 0.009 3.991 15 H 0.105 0.895 16 C -0.149 4.149 17 C -0.139 4.139 18 C -0.182 4.182 19 C 0.051 3.949 20 N -0.304 5.304 21 C -0.386 4.386 22 H 0.086 0.914 23 C -0.193 4.193 24 N -0.551 5.551 25 Si 0.730 3.270 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.208 1.208 29 C 0.028 3.972 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.150 0.850 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.113 0.887 38 H 0.148 0.852 39 H 0.130 0.870 40 H 0.226 0.774 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.093 0.907 48 H 0.043 0.957 49 H 0.063 0.937 50 H 0.050 0.950 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.365 7.163 -19.163 21.744 hybrid contribution -0.412 0.065 0.399 0.577 sum -7.776 7.229 -18.764 21.560 Atomic orbital electron populations 1.21941 0.74017 1.04419 1.04245 1.50038 1.07693 1.03788 1.54874 1.77891 1.01348 1.07432 1.27859 1.23009 0.92358 0.89214 0.97888 1.20055 0.93598 0.89914 1.05424 1.23025 1.03783 0.93847 0.99204 1.23012 1.03054 1.02058 0.91692 1.70227 1.19368 1.10830 1.24684 1.23281 0.86099 0.91380 0.96459 1.20216 1.04541 0.88430 0.97742 1.19967 0.78085 0.82710 0.89811 1.90841 1.47723 1.54559 1.45812 1.46100 1.69342 1.11984 1.09736 1.21294 1.00223 0.97407 0.80219 0.89490 1.20566 0.97881 0.97872 0.98555 1.20828 0.97239 0.99837 0.95999 1.22080 0.98276 0.97694 1.00188 1.21054 0.91974 0.85314 0.96537 1.43569 1.78203 1.09344 0.99286 1.19262 1.37081 0.87371 0.94872 0.91419 1.24998 0.98297 0.96650 0.99315 1.70066 1.43441 1.21807 1.19788 0.86404 0.77879 0.81854 0.80912 1.21088 1.21689 1.20838 1.20907 0.92719 0.97640 0.85936 0.89920 0.88978 0.89223 0.85047 0.87920 0.87856 0.87822 0.88722 0.85173 0.86981 0.77409 0.93494 0.92766 0.90490 0.93408 0.92910 0.93675 0.90655 0.95734 0.93732 0.95039 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.82 11.33 59.85 0.68 1.49 16 2 N -0.37 -5.05 4.04 -65.10 -0.26 -5.32 16 3 N -0.32 -4.88 12.24 32.42 0.40 -4.49 16 4 C 0.26 4.03 7.69 -156.85 -1.21 2.83 16 5 C -0.07 -0.86 6.33 -91.77 -0.58 -1.44 16 6 C -0.16 -1.62 10.13 -26.73 -0.27 -1.89 16 7 C -0.16 -1.49 10.23 -26.73 -0.27 -1.77 16 8 N -0.52 -8.78 11.19 -8.16 -0.09 -8.87 16 9 C 0.30 4.36 6.48 -155.69 -1.01 3.35 16 10 C -0.07 -0.68 6.03 -29.03 -0.17 -0.86 16 11 C 0.51 7.54 7.79 -10.98 -0.09 7.45 16 12 O -0.52 -10.72 15.68 5.56 0.09 -10.63 16 13 N -0.72 -9.36 5.05 -55.63 -0.28 -9.64 16 14 C 0.11 1.97 2.34 -69.79 -0.16 1.80 16 15 H 0.09 1.83 7.55 -51.93 -0.39 1.44 16 16 C -0.11 -1.60 4.55 -29.79 -0.14 -1.74 16 17 C -0.10 -1.66 5.51 -28.02 -0.15 -1.82 16 18 C -0.14 -2.57 5.71 -27.30 -0.16 -2.73 16 19 C 0.18 4.14 4.67 -2.95 -0.01 4.12 16 20 N -0.58 -14.52 2.27 -172.10 -0.39 -14.91 16 21 C -0.26 -7.26 9.44 -15.06 -0.14 -7.40 16 22 H 0.07 2.00 7.88 -52.49 -0.41 1.59 16 23 C 0.01 0.16 4.87 -17.43 -0.08 0.07 16 24 N -0.91 -26.64 11.01 55.49 0.61 -26.03 16 25 Si 0.90 22.80 29.58 -169.99 -5.03 17.78 16 26 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.28 -7.25 7.11 56.52 0.40 -6.84 16 29 C 0.16 3.34 5.24 -4.09 -0.02 3.32 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.46 7.10 -51.93 -0.37 0.09 16 33 H 0.13 1.56 8.14 -51.93 -0.42 1.13 16 34 H 0.10 1.13 7.87 -51.93 -0.41 0.72 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.13 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.11 0.64 7.12 -51.93 -0.37 0.27 16 40 H 0.39 3.45 8.58 -40.82 -0.35 3.10 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.71 7.36 -51.92 -0.38 0.33 16 43 H 0.08 1.52 7.48 -51.93 -0.39 1.13 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.04 0.75 7.32 -51.93 -0.38 0.37 16 47 H 0.08 1.98 6.33 -51.93 -0.33 1.65 16 48 H 0.02 0.63 8.03 -51.93 -0.42 0.21 16 49 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 50 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 51 H 0.05 1.18 7.98 -51.93 -0.41 0.76 16 LS Contribution 409.12 15.07 6.17 6.17 Total: -1.00 -37.43 409.12 -10.98 -48.42 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -8.40 Total: 2.72 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -3.79 Total: 4.80 kcal Atomic # 7 Polarization: -69.23 SS G_CDS: -0.02 Total: -69.24 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.03 Total: 17.78 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -37.43 -10.98 -48.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034535079.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.345 kcal (2) G-P(sol) polarization free energy of solvation -37.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds