Wall clock time and date at job start Wed Apr 1 2020 05:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40441 * 126.82673 * 2 1 4 4 C 1.30711 * 106.79715 * 180.26169 * 3 2 1 5 5 C 1.50696 * 125.53116 * 179.78732 * 4 3 2 6 6 C 1.52997 * 117.49825 * 8.57587 * 5 4 3 7 7 C 1.52995 * 60.00160 * 252.50897 * 6 5 4 8 8 N 1.33244 * 108.94463 * 359.74593 * 4 3 2 9 9 C 1.30836 * 109.82869 * 0.02562 * 8 4 3 10 10 C 1.50701 * 125.96286 * 180.02562 * 9 8 4 11 11 C 1.50701 * 109.47087 * 90.01930 * 10 9 8 12 12 O 1.21279 * 119.99983 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99992 * 180.02562 * 11 10 9 14 14 C 1.46493 * 120.00441 * 180.02562 * 13 11 10 15 15 H 1.09003 * 109.18411 * 34.55847 * 14 13 11 16 16 C 1.47089 * 109.33307 * 154.12845 * 14 13 11 17 17 C 1.52565 * 114.32525 * 183.06026 * 16 14 13 18 18 C 1.50880 * 109.36282 * 274.98808 * 17 16 14 19 19 C 1.53954 * 110.09370 * 91.88878 * 18 17 16 20 20 N 1.47583 * 112.11962 * 319.44928 * 19 18 17 21 21 C 1.36936 * 118.62322 * 137.87324 * 20 19 18 22 22 H 1.07998 * 119.99825 * 206.49894 * 21 20 19 23 23 C 1.38816 * 120.00147 * 26.50043 * 21 20 19 24 24 N 1.31620 * 120.00010 * 15.71271 * 23 21 20 25 25 Si 1.86801 * 120.00173 * 195.70570 * 23 21 20 26 26 H 1.48503 * 109.46821 * 60.00367 * 25 23 21 27 27 H 1.48503 * 109.47046 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47266 * 300.00250 * 25 23 21 29 29 C 1.44576 * 122.73176 * 317.82464 * 20 19 18 30 30 H 1.09000 * 109.47074 * 270.17535 * 1 2 3 31 31 H 1.08995 * 109.46910 * 30.17321 * 1 2 3 32 32 H 1.09004 * 109.47236 * 150.17033 * 1 2 3 33 33 H 1.09003 * 115.54929 * 154.28691 * 5 4 3 34 34 H 1.09000 * 117.49741 * 0.02562 * 6 5 4 35 35 H 1.09003 * 117.49883 * 145.02047 * 6 5 4 36 36 H 1.08998 * 117.50107 * 252.51193 * 7 6 5 37 37 H 1.09003 * 117.49371 * 107.48573 * 7 6 5 38 38 H 1.09004 * 109.46988 * 330.02063 * 10 9 8 39 39 H 1.09000 * 109.47068 * 210.01880 * 10 9 8 40 40 H 0.97006 * 119.99442 * 359.97438 * 13 11 10 41 41 H 1.08996 * 108.51420 * 304.31820 * 16 14 13 42 42 H 1.09009 * 108.50731 * 61.81200 * 16 14 13 43 43 H 1.09002 * 109.49257 * 34.95830 * 17 16 14 44 44 H 1.09003 * 109.49057 * 155.00675 * 17 16 14 45 45 H 1.09000 * 109.37192 * 212.07486 * 18 17 16 46 46 H 1.08995 * 109.36992 * 331.83055 * 18 17 16 47 47 H 1.09004 * 108.94957 * 80.11915 * 19 18 17 48 48 H 1.09000 * 108.94774 * 198.75505 * 19 18 17 49 49 H 0.97000 * 120.00099 * 179.97438 * 24 23 21 50 50 H 1.08998 * 109.44873 * 330.73458 * 29 20 19 51 51 H 1.09000 * 109.44670 * 210.79313 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1242 0.0000 4 6 3.5349 0.6765 -0.0057 5 6 4.7777 1.5287 -0.0125 6 6 4.6023 3.0351 0.1896 7 6 4.9713 2.4863 -1.1900 8 7 3.5096 -0.6557 -0.0037 9 6 2.2707 -1.0761 0.0028 10 6 1.8246 -2.5156 0.0075 11 6 1.6820 -2.9926 1.4299 12 8 1.9196 -2.2382 2.3492 13 7 1.2913 -4.2580 1.6803 14 6 1.1520 -4.7217 3.0630 15 1 0.7974 -3.8982 3.6829 16 6 0.1777 -5.8225 3.1116 17 6 -0.1105 -6.3450 4.5157 18 6 0.9286 -7.3729 4.8901 19 6 2.1020 -6.6964 5.6221 20 7 2.4631 -5.4007 5.0147 21 6 2.7477 -4.3459 5.8402 22 1 2.5959 -3.3339 5.4950 23 6 3.2313 -4.5773 7.1206 24 7 3.7070 -5.7622 7.4402 25 14 3.2070 -3.2071 8.3901 26 1 1.8078 -2.7611 8.6102 27 1 3.7737 -3.7068 9.6685 28 1 4.0196 -2.0646 7.9008 29 6 2.5297 -5.1993 3.5846 30 1 -0.3633 0.0031 1.0277 31 1 -0.3633 0.8884 -0.5165 32 1 -0.3634 -0.8915 -0.5112 33 1 5.6686 1.0642 0.4102 34 1 3.5881 3.4097 0.3279 35 1 5.3779 3.5620 0.7455 36 1 5.9896 2.6519 -1.5418 37 1 4.1996 2.4997 -1.9598 38 1 2.5650 -3.1271 -0.5083 39 1 0.8648 -2.6002 -0.5021 40 1 1.1016 -4.8615 0.9449 41 1 -0.7578 -5.4763 2.6723 42 1 0.5561 -6.6465 2.5066 43 1 -0.0767 -5.5184 5.2255 44 1 -1.0995 -6.8028 4.5375 45 1 0.4786 -8.1209 5.5428 46 1 1.2996 -7.8573 3.9870 47 1 1.8232 -6.5337 6.6632 48 1 2.9683 -7.3571 5.5884 49 1 4.0453 -5.9238 8.3349 50 1 2.7967 -6.1374 3.0980 51 1 3.2844 -4.4458 3.3590 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034535079.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:15 Heat of formation + Delta-G solvation = 77.162827 kcal Electronic energy + Delta-G solvation = -31218.103031 eV Core-core repulsion = 27154.895034 eV Total energy + Delta-G solvation = -4063.207998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.25031 -41.00967 -39.24511 -38.18409 -36.23960 -34.91934 -34.82944 -33.75114 -32.88355 -31.73314 -29.78441 -28.25016 -27.81724 -25.84161 -24.93134 -24.74222 -23.32778 -22.50890 -21.62468 -21.23925 -20.92733 -20.65038 -18.62029 -18.34595 -18.09364 -17.48248 -16.87268 -16.72327 -16.47056 -16.34907 -16.02889 -15.75984 -15.45369 -15.11347 -14.87429 -14.55803 -14.37206 -14.25065 -14.17413 -14.05257 -13.80313 -13.24540 -13.13808 -13.07484 -13.01235 -12.83539 -12.69890 -12.50195 -12.41785 -12.31323 -12.07304 -11.89277 -11.64625 -11.50290 -11.46063 -11.37637 -11.12908 -11.09401 -11.04854 -10.71798 -10.53050 -10.18629 -10.12908 -8.64913 -7.90727 -5.35816 0.45104 1.32096 1.37732 1.38816 1.46838 1.61336 1.64838 2.25921 2.48153 2.81589 2.96174 3.21635 3.36133 3.47594 3.69738 3.85835 3.86915 3.95374 4.00890 4.05769 4.15229 4.22134 4.27170 4.29743 4.42257 4.45391 4.53340 4.57565 4.61575 4.71310 4.74177 4.78762 4.87417 5.01978 5.06580 5.08870 5.14930 5.20368 5.24830 5.28317 5.29981 5.35854 5.38605 5.43916 5.60900 5.68248 5.72223 5.79721 5.83230 6.37921 6.63215 7.05065 7.16144 7.36181 7.93835 8.26896 9.13121 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010832 B = 0.002963 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.276534 B = 9447.104852 C =11166.626744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.376 5.376 3 N -0.341 5.341 4 C 0.239 3.761 5 C -0.101 4.101 6 C -0.155 4.155 7 C -0.134 4.134 8 N -0.566 5.566 9 C 0.293 3.707 10 C -0.054 4.054 11 C 0.511 3.489 12 O -0.585 6.585 13 N -0.700 5.700 14 C 0.137 3.863 15 H 0.041 0.959 16 C -0.108 4.108 17 C -0.099 4.099 18 C -0.130 4.130 19 C 0.184 3.816 20 N -0.597 5.597 21 C -0.262 4.262 22 H 0.043 0.957 23 C -0.041 4.041 24 N -0.929 5.929 25 Si 0.954 3.046 26 H -0.279 1.279 27 H -0.283 1.283 28 H -0.288 1.288 29 C 0.157 3.843 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.090 0.910 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.091 0.909 38 H 0.156 0.844 39 H 0.171 0.829 40 H 0.421 0.579 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.035 0.965 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.038 0.962 48 H -0.006 1.006 49 H 0.251 0.749 50 H 0.052 0.948 51 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.824 5.046 -23.021 25.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.166 5.166 3 N -0.170 5.170 4 C -0.042 4.042 5 C -0.122 4.122 6 C -0.192 4.192 7 C -0.173 4.173 8 N -0.295 5.295 9 C 0.016 3.984 10 C -0.095 4.095 11 C 0.296 3.704 12 O -0.464 6.464 13 N -0.353 5.353 14 C 0.030 3.970 15 H 0.060 0.940 16 C -0.145 4.145 17 C -0.138 4.138 18 C -0.169 4.169 19 C 0.059 3.941 20 N -0.319 5.319 21 C -0.393 4.393 22 H 0.061 0.939 23 C -0.236 4.236 24 N -0.575 5.575 25 Si 0.782 3.218 26 H -0.205 1.205 27 H -0.208 1.208 28 H -0.215 1.215 29 C 0.029 3.971 30 H 0.091 0.909 31 H 0.125 0.875 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.108 0.892 35 H 0.141 0.859 36 H 0.148 0.852 37 H 0.109 0.891 38 H 0.174 0.826 39 H 0.188 0.812 40 H 0.260 0.740 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.054 0.946 44 H 0.103 0.897 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.056 0.944 48 H 0.012 0.988 49 H 0.060 0.940 50 H 0.070 0.930 51 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -9.637 6.020 -22.227 24.963 hybrid contribution 0.287 0.424 1.305 1.402 sum -9.350 6.444 -20.922 23.805 Atomic orbital electron populations 1.22366 0.71409 1.07351 1.04452 1.50349 1.09144 1.03133 1.53944 1.77784 1.01648 1.08915 1.28666 1.23574 0.93368 0.89460 0.97784 1.20234 0.92703 0.90782 1.08493 1.23074 1.03765 0.92177 1.00230 1.23082 1.04326 0.99089 0.90770 1.70192 1.21338 1.11656 1.26265 1.23933 0.85824 0.92994 0.95640 1.20389 1.08294 0.86157 0.94698 1.20750 0.76239 0.82347 0.91061 1.90834 1.50634 1.56494 1.48444 1.45777 1.68435 1.12121 1.08920 1.20650 0.97825 0.96914 0.81660 0.94047 1.20506 0.98575 0.97490 0.97950 1.20819 0.98578 0.98152 0.96223 1.21938 0.96250 0.97950 1.00738 1.20874 0.93170 0.84375 0.95662 1.43700 1.78762 1.08919 1.00503 1.19255 1.36628 0.87519 0.95873 0.93929 1.25588 0.98630 0.98682 1.00740 1.70191 1.44379 1.23065 1.19855 0.85561 0.77873 0.79308 0.79043 1.20491 1.20816 1.21484 1.21017 0.94385 0.97344 0.84357 0.90948 0.87540 0.84959 0.85438 0.89185 0.85909 0.85218 0.89056 0.82637 0.81175 0.74047 0.90012 0.89726 0.94643 0.89735 0.91171 0.91315 0.94373 0.98785 0.94007 0.92977 0.97390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 11.33 127.77 1.45 2.71 16 2 N -0.38 -9.90 4.04 -359.86 -1.45 -11.35 16 3 N -0.34 -10.73 12.24 -51.34 -0.63 -11.36 16 4 C 0.24 7.78 7.69 138.63 1.07 8.84 16 5 C -0.10 -2.59 6.33 -11.54 -0.07 -2.66 16 6 C -0.15 -3.12 10.13 30.59 0.31 -2.81 16 7 C -0.13 -2.41 10.23 30.59 0.31 -2.10 16 8 N -0.57 -19.37 11.19 -179.72 -2.01 -21.38 16 9 C 0.29 8.13 6.48 138.22 0.90 9.03 16 10 C -0.05 -0.94 6.03 29.10 0.18 -0.76 16 11 C 0.51 14.39 7.79 87.66 0.68 15.08 16 12 O -0.58 -25.25 15.68 -3.03 -0.05 -25.30 16 13 N -0.70 -16.29 5.05 -448.29 -2.27 -18.55 16 14 C 0.14 4.55 2.34 43.79 0.10 4.65 16 15 H 0.04 1.79 7.55 -2.39 -0.02 1.77 16 16 C -0.11 -2.69 4.55 28.61 0.13 -2.56 16 17 C -0.10 -3.02 5.51 29.76 0.16 -2.85 16 18 C -0.13 -4.39 5.71 30.23 0.17 -4.21 16 19 C 0.18 8.85 4.67 86.49 0.40 9.26 16 20 N -0.60 -30.87 2.27 -698.41 -1.58 -32.46 16 21 C -0.26 -15.69 9.44 84.03 0.79 -14.90 16 22 H 0.04 2.72 7.88 -2.91 -0.02 2.70 16 23 C -0.04 -2.43 4.87 84.86 0.41 -2.01 16 24 N -0.93 -56.84 11.01 21.65 0.24 -56.60 16 25 Si 0.95 48.79 29.58 68.60 2.03 50.82 16 26 H -0.28 -13.88 7.11 99.48 0.71 -13.18 16 27 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 28 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 29 C 0.16 6.77 5.24 87.37 0.46 7.23 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.13 0.77 7.10 -2.38 -0.02 0.76 16 33 H 0.13 3.22 8.14 -2.39 -0.02 3.20 16 34 H 0.09 2.04 7.87 -2.39 -0.02 2.02 16 35 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.16 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.17 0.93 7.12 -2.39 -0.02 0.92 16 40 H 0.42 5.23 8.58 -92.70 -0.80 4.44 16 41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.08 1.70 7.36 -2.38 -0.02 1.68 16 43 H 0.03 1.38 7.48 -2.39 -0.02 1.36 16 44 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.07 2.02 7.32 -2.39 -0.02 2.00 16 47 H 0.04 2.09 6.33 -2.38 -0.02 2.07 16 48 H -0.01 -0.32 8.03 -2.39 -0.02 -0.34 16 49 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 50 H 0.05 2.00 8.07 -2.39 -0.02 1.98 16 51 H 0.01 0.39 7.98 -2.39 -0.02 0.37 16 Total: -1.00 -92.47 409.12 1.87 -90.60 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.14 Total: 13.64 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 7.45 Total: 21.94 kcal Atomic # 7 Polarization: -143.99 SS G_CDS: -7.70 Total: -151.70 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.05 Total: -25.30 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 2.03 Total: 50.82 kcal Total: -92.47 1.87 -90.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034535079.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.760 kcal (2) G-P(sol) polarization free energy of solvation -92.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds