Wall clock time and date at job start Wed Apr 1 2020 06:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.29113 * 126.00816 * 2 1 4 4 N 1.29012 * 110.25925 * 179.97438 * 3 2 1 5 5 C 1.32911 * 108.63971 * 0.40409 * 4 3 2 6 6 C 1.34398 * 126.00649 * 180.30521 * 2 1 3 7 7 C 1.50534 * 129.25418 * 359.74569 * 6 2 1 8 8 C 1.53441 * 108.32227 * 196.48626 * 7 6 2 9 9 H 1.08995 * 109.46074 * 70.32483 * 8 7 6 10 10 C 1.50707 * 109.43934 * 190.28162 * 8 7 6 11 11 O 1.21282 * 119.99977 * 0.07061 * 10 8 7 12 12 N 1.34780 * 119.99525 * 180.02562 * 10 8 7 13 13 C 1.46503 * 119.99344 * 180.02562 * 12 10 8 14 14 H 1.08996 * 109.47370 * 324.99475 * 13 12 10 15 15 C 1.52995 * 109.47397 * 84.99925 * 13 12 10 16 16 C 1.53004 * 109.47156 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47075 * 300.00093 * 16 15 13 18 18 H 1.09003 * 109.47339 * 299.99762 * 17 16 15 19 19 N 1.46496 * 109.47010 * 180.02562 * 17 16 15 20 20 C 1.36935 * 120.00393 * 84.99690 * 19 17 16 21 21 H 1.07996 * 120.00101 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00167 * 180.02562 * 20 19 17 23 23 N 1.31618 * 120.00043 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 120.00019 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.46907 * 90.00181 * 24 22 20 26 26 H 1.48495 * 109.47042 * 210.00325 * 24 22 20 27 27 H 1.48500 * 109.47015 * 330.00494 * 24 22 20 28 28 C 1.52995 * 109.47204 * 59.99937 * 17 16 15 29 29 C 1.53001 * 109.47188 * 299.99634 * 28 17 16 30 30 C 1.53112 * 109.55304 * 310.29169 * 8 7 6 31 31 C 1.50594 * 129.16483 * 179.56917 * 5 4 3 32 32 H 1.09002 * 109.47391 * 269.69263 * 1 2 3 33 33 H 1.09001 * 109.46813 * 149.69319 * 1 2 3 34 34 H 1.09004 * 109.47041 * 29.69446 * 1 2 3 35 35 H 1.08997 * 109.69394 * 316.18814 * 7 6 2 36 36 H 1.09003 * 109.69020 * 76.77632 * 7 6 2 37 37 H 0.96988 * 120.00182 * 359.97438 * 12 10 8 38 38 H 1.08999 * 109.47288 * 299.99662 * 15 13 12 39 39 H 1.09003 * 109.47116 * 59.99873 * 15 13 12 40 40 H 1.09001 * 109.46959 * 179.97438 * 16 15 13 41 41 H 1.09003 * 109.46843 * 60.00158 * 16 15 13 42 42 H 0.97003 * 120.00044 * 264.99814 * 19 17 16 43 43 H 0.97006 * 119.99725 * 179.97438 * 23 22 20 44 44 H 1.08999 * 109.47288 * 179.97438 * 28 17 16 45 45 H 1.08996 * 109.47228 * 60.00098 * 28 17 16 46 46 H 1.08996 * 109.47414 * 300.00350 * 29 28 17 47 47 H 1.09001 * 109.47148 * 179.97438 * 29 28 17 48 48 H 1.08994 * 109.45350 * 310.04755 * 30 8 7 49 49 H 1.08994 * 109.43584 * 190.10145 * 30 8 7 50 50 H 1.08996 * 109.69526 * 316.28111 * 31 5 4 51 51 H 1.09000 * 109.69168 * 76.86162 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4657 0.6943 0.0005 5 6 3.5328 -0.6331 -0.0080 6 6 2.2551 -1.0872 -0.0058 7 6 1.8721 -2.5430 -0.0084 8 6 3.1016 -3.3659 0.3983 9 1 3.3149 -3.2023 1.4546 10 6 2.8265 -4.8288 0.1625 11 8 1.7560 -5.1797 -0.2868 12 7 3.7704 -5.7469 0.4501 13 6 3.5030 -7.1689 0.2203 14 1 2.4538 -7.3794 0.4270 15 6 3.8160 -7.5178 -1.2361 16 6 3.5374 -9.0030 -1.4758 17 6 4.4186 -9.8433 -0.5494 18 1 5.4679 -9.6325 -0.7561 19 7 4.1523 -11.2654 -0.7794 20 6 4.8025 -11.9299 -1.7847 21 1 5.5121 -11.4058 -2.4078 22 6 4.5498 -13.2773 -2.0030 23 7 5.1752 -13.9161 -2.9689 24 14 3.3230 -14.1841 -0.9248 25 1 1.9690 -14.0875 -1.5267 26 1 3.7173 -15.6119 -0.8194 27 1 3.3077 -13.5736 0.4288 28 6 4.1057 -9.4943 0.9070 29 6 4.3843 -8.0091 1.1468 30 6 4.3081 -2.9325 -0.4388 31 6 4.7469 -1.5240 -0.0198 32 1 -0.3634 -0.0055 1.0276 33 1 -0.3633 -0.8872 -0.5186 34 1 -0.3633 0.8927 -0.5091 35 1 1.0650 -2.7118 0.7045 36 1 1.5480 -2.8357 -1.0071 37 1 4.6268 -5.4661 0.8085 38 1 3.1885 -6.9189 -1.8961 39 1 4.8654 -7.3074 -1.4427 40 1 3.7599 -9.2515 -2.5136 41 1 2.4881 -9.2139 -1.2691 42 1 3.5153 -11.7363 -0.2196 43 1 4.9988 -14.8578 -3.1212 44 1 4.7331 -10.0932 1.5670 45 1 3.0565 -9.7052 1.1138 46 1 5.4335 -7.7983 0.9400 47 1 4.1609 -7.7604 2.1843 48 1 4.0348 -2.9271 -1.4939 49 1 5.1294 -3.6313 -0.2802 50 1 5.4781 -1.1391 -0.7305 51 1 5.1862 -1.5594 0.9771 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034714682.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:43 Heat of formation + Delta-G solvation = 52.228950 kcal Electronic energy + Delta-G solvation = -30465.954921 eV Core-core repulsion = 26401.665709 eV Total energy + Delta-G solvation = -4064.289212 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.78453 -40.47481 -38.41848 -36.92842 -35.32069 -35.04609 -33.14495 -31.28580 -31.03475 -30.56875 -30.50090 -28.29557 -27.80020 -25.06909 -23.80281 -23.15774 -22.49960 -21.83093 -21.15813 -20.70437 -19.98709 -19.57410 -17.92359 -17.49644 -17.29816 -16.79304 -16.45154 -15.51353 -15.17330 -15.05636 -14.51720 -14.32684 -14.27103 -14.21691 -13.97984 -13.84782 -13.73607 -13.41834 -13.30902 -12.97979 -12.70584 -12.62217 -12.46518 -12.22208 -12.03360 -11.90667 -11.77191 -11.61005 -11.48613 -11.20475 -10.95734 -10.91719 -10.89080 -10.68853 -10.35507 -10.26058 -10.22297 -9.90020 -9.85144 -9.58289 -9.23125 -9.08785 -8.89395 -7.26789 -5.77282 -3.12591 1.16903 1.91166 2.17178 2.39028 2.89948 3.36935 3.40114 3.45085 3.71307 3.97512 4.15111 4.26989 4.31192 4.42986 4.45804 4.58803 4.66884 4.72282 4.76157 4.85263 4.91329 4.97585 4.98822 5.08205 5.12681 5.36430 5.42395 5.43974 5.48032 5.51194 5.52768 5.59038 5.59611 5.69095 5.73042 5.75587 5.85502 5.88804 6.07193 6.13868 6.15223 6.16067 6.32103 6.42063 6.48770 6.60416 6.86998 7.02420 7.30821 7.99346 8.01298 8.14107 8.42019 9.20811 9.93563 10.13374 11.41075 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.028551 B = 0.001810 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.466283 B =15464.713507 C =15726.163749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.283 5.283 3 N -0.098 5.098 4 N -0.261 5.261 5 C -0.022 4.022 6 C -0.016 4.016 7 C -0.025 4.025 8 C -0.102 4.102 9 H 0.105 0.895 10 C 0.519 3.481 11 O -0.537 6.537 12 N -0.722 5.722 13 C 0.144 3.856 14 H 0.087 0.913 15 C -0.123 4.123 16 C -0.133 4.133 17 C 0.182 3.818 18 H 0.055 0.945 19 N -0.750 5.750 20 C -0.242 4.242 21 H 0.090 0.910 22 C 0.003 3.997 23 N -0.934 5.934 24 Si 0.884 3.116 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.277 1.277 28 C -0.124 4.124 29 C -0.119 4.119 30 C -0.112 4.112 31 C -0.030 4.030 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.399 0.601 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.068 0.932 45 H 0.060 0.940 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.077 0.923 49 H 0.085 0.915 50 H 0.090 0.910 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.045 27.739 10.574 30.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.075 5.075 3 N -0.076 5.076 4 N -0.126 5.126 5 C -0.162 4.162 6 C -0.150 4.150 7 C -0.065 4.065 8 C -0.124 4.124 9 H 0.123 0.877 10 C 0.305 3.695 11 O -0.414 6.414 12 N -0.372 5.372 13 C 0.041 3.959 14 H 0.105 0.895 15 C -0.163 4.163 16 C -0.173 4.173 17 C 0.072 3.928 18 H 0.073 0.927 19 N -0.391 5.391 20 C -0.372 4.372 21 H 0.108 0.892 22 C -0.193 4.193 23 N -0.582 5.582 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.163 4.163 29 C -0.157 4.157 30 C -0.150 4.150 31 C -0.070 4.070 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.233 0.767 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.096 0.904 49 H 0.103 0.897 50 H 0.109 0.891 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.672 28.985 10.066 31.400 hybrid contribution -0.817 -1.664 0.822 2.028 sum -7.489 27.321 10.888 30.349 Atomic orbital electron populations 1.22319 0.72604 1.06181 1.05197 1.46841 1.09259 1.04565 1.46855 1.78599 0.96109 1.11263 1.21620 1.74801 1.09632 1.11938 1.16207 1.21697 0.94970 0.91402 1.08133 1.21824 0.91255 0.92262 1.09659 1.19916 0.97573 0.84584 1.04400 1.21335 0.96507 0.91804 1.02752 0.87723 1.20329 0.84167 0.87463 0.77549 1.90729 1.24635 1.81782 1.44262 1.46146 1.17811 1.07286 1.66001 1.21135 1.00802 0.78201 0.95806 0.89489 1.21886 1.01363 0.97962 0.95040 1.22188 1.00791 0.92308 1.02057 1.20214 0.97264 0.84390 0.90905 0.92706 1.42789 1.51276 1.05738 1.39346 1.19072 1.18413 0.92564 1.07114 0.89230 1.24680 0.99695 0.96549 0.98341 1.69703 1.45549 1.09927 1.33054 0.86549 0.81856 0.79477 0.80639 1.21138 1.21817 1.20338 1.21790 1.01781 0.93981 0.98742 1.21737 0.99777 0.95687 0.98515 1.21658 0.96565 0.96286 1.00528 1.19935 0.92607 0.91125 1.03292 0.88875 0.88067 0.87835 0.89462 0.88377 0.76696 0.92227 0.92049 0.91297 0.92646 0.80715 0.93104 0.91286 0.92140 0.91289 0.91813 0.90422 0.89695 0.89130 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.28 11.27 59.85 0.67 0.96 16 2 N -0.28 -2.38 3.73 -64.00 -0.24 -2.62 16 3 N -0.10 -1.12 13.19 60.35 0.80 -0.33 16 4 N -0.26 -3.18 12.40 33.16 0.41 -2.77 16 5 C -0.02 -0.21 7.11 -83.12 -0.59 -0.80 16 6 C -0.02 -0.13 6.76 -82.49 -0.56 -0.69 16 7 C -0.03 -0.17 4.68 -27.74 -0.13 -0.30 16 8 C -0.10 -0.64 2.50 -91.48 -0.23 -0.87 16 9 H 0.10 0.50 8.12 -51.93 -0.42 0.08 16 10 C 0.52 4.81 7.12 -10.98 -0.08 4.73 16 11 O -0.54 -7.18 15.48 5.56 0.09 -7.09 16 12 N -0.72 -5.93 4.89 -53.80 -0.26 -6.19 16 13 C 0.14 1.60 2.45 -67.93 -0.17 1.43 16 14 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 15 C -0.12 -1.61 5.49 -26.73 -0.15 -1.76 16 16 C -0.13 -2.21 5.50 -26.73 -0.15 -2.35 16 17 C 0.18 3.24 2.77 -67.94 -0.19 3.05 16 18 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 19 N -0.75 -17.14 4.93 -53.43 -0.26 -17.41 16 20 C -0.24 -6.67 10.41 -15.06 -0.16 -6.83 16 21 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 22 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 23 N -0.93 -29.11 13.97 55.49 0.78 -28.34 16 24 Si 0.88 21.92 27.74 -169.99 -4.71 17.20 16 25 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 27 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 28 C -0.12 -1.74 5.39 -26.73 -0.14 -1.88 16 29 C -0.12 -1.23 5.39 -26.73 -0.14 -1.37 16 30 C -0.11 -0.60 5.17 -26.49 -0.14 -0.74 16 31 C -0.03 -0.19 6.30 -27.75 -0.17 -0.36 16 32 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.10 0.21 7.96 -51.93 -0.41 -0.21 16 34 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.10 0.76 7.78 -51.93 -0.40 0.35 16 37 H 0.40 2.11 7.93 -40.82 -0.32 1.79 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.36 8.15 5.66 -40.82 -0.23 7.92 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 49 H 0.08 0.32 7.30 -51.93 -0.38 -0.06 16 50 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 51 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 401.62 15.07 6.05 6.05 Total: -1.00 -36.45 401.62 -8.27 -44.71 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -8.49 Total: 4.56 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -2.41 Total: -7.79 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 1.22 Total: -57.65 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: 0.09 Total: -7.09 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.20 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.45 -8.27 -44.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034714682.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.942 kcal (2) G-P(sol) polarization free energy of solvation -36.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds