Wall clock time and date at job start Wed Apr 1 2020 06:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.29113 * 126.00816 * 2 1 4 4 N 1.29012 * 110.25925 * 179.97438 * 3 2 1 5 5 C 1.32911 * 108.63971 * 0.40409 * 4 3 2 6 6 C 1.34398 * 126.00649 * 180.30521 * 2 1 3 7 7 C 1.50534 * 129.25418 * 359.74569 * 6 2 1 8 8 C 1.53441 * 108.32227 * 196.48626 * 7 6 2 9 9 H 1.08995 * 109.46074 * 70.32483 * 8 7 6 10 10 C 1.50707 * 109.43934 * 190.28162 * 8 7 6 11 11 O 1.21282 * 119.99977 * 0.07061 * 10 8 7 12 12 N 1.34780 * 119.99525 * 180.02562 * 10 8 7 13 13 C 1.46503 * 119.99344 * 180.02562 * 12 10 8 14 14 H 1.08996 * 109.47370 * 324.99475 * 13 12 10 15 15 C 1.52995 * 109.47397 * 84.99925 * 13 12 10 16 16 C 1.53004 * 109.47156 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47075 * 300.00093 * 16 15 13 18 18 H 1.09003 * 109.47339 * 299.99762 * 17 16 15 19 19 N 1.46496 * 109.47010 * 180.02562 * 17 16 15 20 20 C 1.36935 * 120.00393 * 84.99690 * 19 17 16 21 21 H 1.07996 * 120.00101 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00167 * 180.02562 * 20 19 17 23 23 N 1.31618 * 120.00043 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 120.00019 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.46907 * 90.00181 * 24 22 20 26 26 H 1.48495 * 109.47042 * 210.00325 * 24 22 20 27 27 H 1.48500 * 109.47015 * 330.00494 * 24 22 20 28 28 C 1.52995 * 109.47204 * 59.99937 * 17 16 15 29 29 C 1.53001 * 109.47188 * 299.99634 * 28 17 16 30 30 C 1.53112 * 109.55304 * 310.29169 * 8 7 6 31 31 C 1.50594 * 129.16483 * 179.56917 * 5 4 3 32 32 H 1.09002 * 109.47391 * 269.69263 * 1 2 3 33 33 H 1.09001 * 109.46813 * 149.69319 * 1 2 3 34 34 H 1.09004 * 109.47041 * 29.69446 * 1 2 3 35 35 H 1.08997 * 109.69394 * 316.18814 * 7 6 2 36 36 H 1.09003 * 109.69020 * 76.77632 * 7 6 2 37 37 H 0.96988 * 120.00182 * 359.97438 * 12 10 8 38 38 H 1.08999 * 109.47288 * 299.99662 * 15 13 12 39 39 H 1.09003 * 109.47116 * 59.99873 * 15 13 12 40 40 H 1.09001 * 109.46959 * 179.97438 * 16 15 13 41 41 H 1.09003 * 109.46843 * 60.00158 * 16 15 13 42 42 H 0.97003 * 120.00044 * 264.99814 * 19 17 16 43 43 H 0.97006 * 119.99725 * 179.97438 * 23 22 20 44 44 H 1.08999 * 109.47288 * 179.97438 * 28 17 16 45 45 H 1.08996 * 109.47228 * 60.00098 * 28 17 16 46 46 H 1.08996 * 109.47414 * 300.00350 * 29 28 17 47 47 H 1.09001 * 109.47148 * 179.97438 * 29 28 17 48 48 H 1.08994 * 109.45350 * 310.04755 * 30 8 7 49 49 H 1.08994 * 109.43584 * 190.10145 * 30 8 7 50 50 H 1.08996 * 109.69526 * 316.28111 * 31 5 4 51 51 H 1.09000 * 109.69168 * 76.86162 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4657 0.6943 0.0005 5 6 3.5328 -0.6331 -0.0080 6 6 2.2551 -1.0872 -0.0058 7 6 1.8721 -2.5430 -0.0084 8 6 3.1016 -3.3659 0.3983 9 1 3.3149 -3.2023 1.4546 10 6 2.8265 -4.8288 0.1625 11 8 1.7560 -5.1797 -0.2868 12 7 3.7704 -5.7469 0.4501 13 6 3.5030 -7.1689 0.2203 14 1 2.4538 -7.3794 0.4270 15 6 3.8160 -7.5178 -1.2361 16 6 3.5374 -9.0030 -1.4758 17 6 4.4186 -9.8433 -0.5494 18 1 5.4679 -9.6325 -0.7561 19 7 4.1523 -11.2654 -0.7794 20 6 4.8025 -11.9299 -1.7847 21 1 5.5121 -11.4058 -2.4078 22 6 4.5498 -13.2773 -2.0030 23 7 5.1752 -13.9161 -2.9689 24 14 3.3230 -14.1841 -0.9248 25 1 1.9690 -14.0875 -1.5267 26 1 3.7173 -15.6119 -0.8194 27 1 3.3077 -13.5736 0.4288 28 6 4.1057 -9.4943 0.9070 29 6 4.3843 -8.0091 1.1468 30 6 4.3081 -2.9325 -0.4388 31 6 4.7469 -1.5240 -0.0198 32 1 -0.3634 -0.0055 1.0276 33 1 -0.3633 -0.8872 -0.5186 34 1 -0.3633 0.8927 -0.5091 35 1 1.0650 -2.7118 0.7045 36 1 1.5480 -2.8357 -1.0071 37 1 4.6268 -5.4661 0.8085 38 1 3.1885 -6.9189 -1.8961 39 1 4.8654 -7.3074 -1.4427 40 1 3.7599 -9.2515 -2.5136 41 1 2.4881 -9.2139 -1.2691 42 1 3.5153 -11.7363 -0.2196 43 1 4.9988 -14.8578 -3.1212 44 1 4.7331 -10.0932 1.5670 45 1 3.0565 -9.7052 1.1138 46 1 5.4335 -7.7983 0.9400 47 1 4.1609 -7.7604 2.1843 48 1 4.0348 -2.9271 -1.4939 49 1 5.1294 -3.6313 -0.2802 50 1 5.4781 -1.1391 -0.7305 51 1 5.1862 -1.5594 0.9771 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034714682.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:42 Heat of formation + Delta-G solvation = 26.064691 kcal Electronic energy + Delta-G solvation = -30467.089488 eV Core-core repulsion = 26401.665709 eV Total energy + Delta-G solvation = -4065.423779 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.43494 -41.25434 -39.50823 -37.61049 -36.43329 -35.86784 -34.61895 -32.91725 -31.65583 -31.52912 -31.43476 -29.17718 -28.70480 -25.93578 -24.93154 -24.23630 -23.61301 -22.45582 -22.31921 -21.51105 -21.08110 -20.42609 -19.52041 -18.42604 -17.91019 -17.44809 -17.32724 -16.75373 -16.18287 -16.15925 -15.67502 -15.17565 -15.05113 -14.91923 -14.84083 -14.77955 -14.69579 -14.32959 -14.31067 -14.12298 -13.69985 -13.59025 -13.33062 -13.12206 -13.06238 -13.02091 -12.89031 -12.60339 -12.41897 -12.22101 -12.15717 -12.00854 -11.93766 -11.90572 -11.76942 -11.54795 -11.42726 -11.17891 -10.95381 -10.87531 -10.68335 -9.95444 -9.86769 -9.27039 -7.99893 -5.32323 0.53048 1.38723 1.42230 1.43295 1.47635 1.49489 1.68443 2.19675 2.50512 3.16801 3.31496 3.42677 3.61739 3.73102 3.77875 3.78902 3.82235 3.92762 3.94975 4.15486 4.24062 4.29829 4.31659 4.38676 4.41072 4.45554 4.51527 4.56215 4.59061 4.63919 4.67437 4.68322 4.90273 4.91089 4.92730 4.99458 5.04460 5.10589 5.17851 5.20533 5.24065 5.28834 5.31726 5.34140 5.53364 5.58541 5.61292 5.66287 5.81428 6.25001 6.66431 7.11525 7.35135 7.44644 7.89372 8.07260 9.21735 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.028551 B = 0.001810 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.466283 B =15464.713507 C =15726.163749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.278 5.278 3 N -0.131 5.131 4 N -0.301 5.301 5 C -0.033 4.033 6 C -0.015 4.015 7 C -0.020 4.020 8 C -0.092 4.092 9 H 0.130 0.870 10 C 0.521 3.479 11 O -0.581 6.581 12 N -0.708 5.708 13 C 0.153 3.847 14 H 0.069 0.931 15 C -0.113 4.113 16 C -0.125 4.125 17 C 0.174 3.826 18 H 0.046 0.954 19 N -0.754 5.754 20 C -0.224 4.224 21 H 0.056 0.944 22 C -0.069 4.069 23 N -0.986 5.986 24 Si 0.954 3.046 25 H -0.283 1.283 26 H -0.298 1.298 27 H -0.248 1.248 28 C -0.117 4.117 29 C -0.107 4.107 30 C -0.106 4.106 31 C -0.027 4.027 32 H 0.112 0.888 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.418 0.582 38 H 0.049 0.951 39 H 0.073 0.927 40 H 0.034 0.966 41 H 0.047 0.953 42 H 0.364 0.636 43 H 0.256 0.744 44 H 0.071 0.929 45 H 0.061 0.939 46 H 0.086 0.914 47 H 0.092 0.908 48 H 0.064 0.936 49 H 0.109 0.891 50 H 0.092 0.908 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.490 28.758 13.560 32.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.071 5.071 3 N -0.109 5.109 4 N -0.164 5.164 5 C -0.175 4.175 6 C -0.150 4.150 7 C -0.060 4.060 8 C -0.113 4.113 9 H 0.148 0.852 10 C 0.309 3.691 11 O -0.460 6.460 12 N -0.359 5.359 13 C 0.048 3.952 14 H 0.088 0.912 15 C -0.152 4.152 16 C -0.166 4.166 17 C 0.066 3.934 18 H 0.064 0.936 19 N -0.397 5.397 20 C -0.355 4.355 21 H 0.074 0.926 22 C -0.260 4.260 23 N -0.637 5.637 24 Si 0.782 3.218 25 H -0.210 1.210 26 H -0.224 1.224 27 H -0.172 1.172 28 C -0.156 4.156 29 C -0.145 4.145 30 C -0.144 4.144 31 C -0.066 4.066 32 H 0.130 0.870 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.256 0.744 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.197 0.803 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.104 0.896 47 H 0.111 0.889 48 H 0.083 0.917 49 H 0.127 0.873 50 H 0.110 0.890 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.107 30.100 13.102 33.589 hybrid contribution -0.689 -1.906 -0.194 2.036 sum -7.796 28.194 12.908 31.974 Atomic orbital electron populations 1.22729 0.70254 1.07519 1.06867 1.47214 1.10644 1.04016 1.45213 1.78513 0.96457 1.12521 1.23400 1.74744 1.10302 1.13598 1.17748 1.22313 0.96628 0.90938 1.07583 1.22062 0.91069 0.92773 1.09096 1.19909 0.98315 0.83604 1.04161 1.21303 0.96433 0.89264 1.04351 0.85223 1.20782 0.83436 0.88544 0.76378 1.90725 1.26539 1.82568 1.46182 1.45919 1.18621 1.05859 1.65520 1.20830 1.00092 0.80050 0.94209 0.91249 1.21762 1.01831 0.94796 0.96825 1.22011 0.99981 0.94958 0.99661 1.20498 0.96935 0.81798 0.94136 0.93570 1.42853 1.50892 1.07746 1.38165 1.19035 1.16937 0.92537 1.07028 0.92606 1.25514 1.02456 0.97730 1.00306 1.69891 1.48097 1.10105 1.35605 0.85413 0.78812 0.77560 0.80026 1.20990 1.22449 1.17223 1.21697 1.01930 0.96797 0.95185 1.21662 1.00511 0.92534 0.99838 1.21643 0.96869 0.96353 0.99533 1.20052 0.91469 0.90644 1.04473 0.86997 0.86370 0.86959 0.88489 0.89407 0.74421 0.93205 0.90862 0.94746 0.93379 0.80306 0.93527 0.91010 0.91994 0.89563 0.88906 0.91715 0.87290 0.88987 0.87675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.38 11.27 127.77 1.44 1.82 16 2 N -0.28 -4.42 3.73 -356.40 -1.33 -5.75 16 3 N -0.13 -3.01 13.19 37.02 0.49 -2.52 16 4 N -0.30 -7.27 12.40 -48.99 -0.61 -7.88 16 5 C -0.03 -0.59 7.11 41.75 0.30 -0.29 16 6 C -0.01 -0.22 6.76 41.50 0.28 0.06 16 7 C -0.02 -0.24 4.68 29.94 0.14 -0.10 16 8 C -0.09 -0.85 2.50 -11.35 -0.03 -0.88 16 9 H 0.13 0.65 8.12 -2.39 -0.02 0.63 16 10 C 0.52 8.12 7.12 87.66 0.62 8.74 16 11 O -0.58 -14.51 15.48 -3.04 -0.05 -14.56 16 12 N -0.71 -8.89 4.89 -442.51 -2.17 -11.06 16 13 C 0.15 2.92 2.45 44.99 0.11 3.03 16 14 H 0.07 1.65 7.58 -2.39 -0.02 1.63 16 15 C -0.11 -2.78 5.49 30.59 0.17 -2.61 16 16 C -0.13 -4.17 5.50 30.60 0.17 -4.00 16 17 C 0.17 6.04 2.77 44.99 0.12 6.17 16 18 H 0.05 1.69 8.08 -2.39 -0.02 1.67 16 19 N -0.75 -34.11 4.93 -322.96 -1.59 -35.70 16 20 C -0.22 -12.62 10.41 84.03 0.87 -11.75 16 21 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 22 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 23 N -0.99 -63.36 13.97 21.65 0.30 -63.05 16 24 Si 0.95 45.37 27.74 68.60 1.90 47.27 16 25 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 26 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 27 H -0.25 -10.45 6.52 99.48 0.65 -9.80 16 28 C -0.12 -2.94 5.39 30.59 0.16 -2.77 16 29 C -0.11 -1.76 5.39 30.60 0.16 -1.60 16 30 C -0.11 -0.81 5.17 30.75 0.16 -0.65 16 31 C -0.03 -0.27 6.30 29.94 0.19 -0.08 16 32 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.12 0.27 7.96 -2.39 -0.02 0.25 16 34 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 35 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 1.25 7.78 -2.39 -0.02 1.23 16 37 H 0.42 2.26 7.93 -92.72 -0.74 1.53 16 38 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 42 H 0.36 15.84 5.66 -92.71 -0.52 15.31 16 43 H 0.26 15.71 8.31 -92.70 -0.77 14.94 16 44 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 45 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.06 0.70 8.12 -2.39 -0.02 0.68 16 49 H 0.11 0.33 7.30 -2.39 -0.02 0.32 16 50 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -83.55 401.62 1.92 -81.63 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -0.38 Total: 20.12 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 5.34 Total: -8.50 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -4.90 Total: -125.96 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.05 Total: -14.56 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.90 Total: 47.27 kcal Total: -83.55 1.92 -81.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034714682.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.694 kcal (2) G-P(sol) polarization free energy of solvation -83.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds