Wall clock time and date at job start Wed Apr 1 2020 05:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35316 * 125.86705 * 2 1 4 4 C 1.35343 * 106.17631 * 180.11618 * 3 2 1 5 5 C 1.50703 * 126.75142 * 179.84992 * 4 3 2 6 6 C 1.53005 * 109.46742 * 124.71697 * 5 4 3 7 7 C 1.50703 * 109.46742 * 180.02562 * 6 5 4 8 8 O 1.21274 * 119.99983 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99709 * 179.97438 * 7 6 5 10 10 C 1.46928 * 120.55154 * 179.97438 * 9 7 6 11 11 C 1.53342 * 108.68473 * 125.67290 * 10 9 7 12 12 C 1.52110 * 109.44249 * 53.30481 * 11 10 9 13 13 C 1.54385 * 110.50739 * 64.08966 * 12 11 10 14 14 C 1.54457 * 102.87109 * 83.33374 * 13 12 11 15 15 N 1.47083 * 107.29725 * 21.50085 * 14 13 12 16 16 C 1.36935 * 125.62931 * 180.96847 * 15 14 13 17 17 H 1.08003 * 119.99937 * 168.95343 * 16 15 14 18 18 C 1.38811 * 119.99964 * 348.94815 * 16 15 14 19 19 N 1.31619 * 119.99929 * 165.65470 * 18 16 15 20 20 Si 1.86799 * 120.00069 * 345.65523 * 18 16 15 21 21 H 1.48500 * 109.47088 * 185.28736 * 20 18 16 22 22 H 1.48495 * 109.46844 * 305.28614 * 20 18 16 23 23 H 1.48497 * 109.46908 * 65.28631 * 20 18 16 24 24 C 1.47575 * 108.74515 * 1.23423 * 15 14 13 25 25 C 1.52103 * 111.59976 * 300.69054 * 12 11 10 26 26 C 1.46928 * 120.55004 * 0.02562 * 9 7 6 27 27 N 1.33778 * 106.49680 * 359.59549 * 4 3 2 28 28 N 1.28634 * 108.88151 * 0.25767 * 27 4 3 29 29 H 1.09000 * 109.47516 * 270.32437 * 1 2 3 30 30 H 1.09004 * 109.47702 * 30.32716 * 1 2 3 31 31 H 1.09008 * 109.47493 * 150.32619 * 1 2 3 32 32 H 1.08004 * 126.91065 * 359.97438 * 3 2 1 33 33 H 1.08991 * 109.46942 * 4.71747 * 5 4 3 34 34 H 1.09004 * 109.47040 * 244.71316 * 5 4 3 35 35 H 1.08997 * 109.46938 * 60.00169 * 6 5 4 36 36 H 1.08993 * 109.47178 * 300.00154 * 6 5 4 37 37 H 1.08999 * 109.60337 * 5.91689 * 10 9 7 38 38 H 1.09002 * 109.73805 * 245.50682 * 10 9 7 39 39 H 1.08999 * 109.47461 * 293.31423 * 11 10 9 40 40 H 1.08999 * 109.48299 * 173.29949 * 11 10 9 41 41 H 1.08995 * 110.73888 * 324.98680 * 13 12 11 42 42 H 1.09004 * 110.73381 * 201.67143 * 13 12 11 43 43 H 1.09003 * 109.87682 * 262.08138 * 14 13 12 44 44 H 1.09002 * 109.88538 * 140.92812 * 14 13 12 45 45 H 0.97002 * 120.00420 * 354.93210 * 19 18 16 46 46 H 1.09003 * 110.37719 * 95.25320 * 24 15 14 47 47 H 1.08995 * 110.38134 * 217.60924 * 24 15 14 48 48 H 1.08994 * 109.47603 * 179.28981 * 25 12 11 49 49 H 1.09001 * 109.48068 * 299.31611 * 25 12 11 50 50 H 1.08992 * 109.60702 * 354.08207 * 26 9 7 51 51 H 1.08995 * 109.60156 * 114.56724 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0966 0.0000 4 6 3.5321 0.6405 -0.0026 5 6 4.7879 1.4736 -0.0069 6 6 5.6700 1.0723 1.1772 7 6 6.9256 1.9058 1.1733 8 8 7.0981 2.7383 0.3085 9 7 7.8567 1.7260 2.1310 10 6 9.0855 2.5315 2.1386 11 6 9.2230 3.2048 3.5094 12 6 9.1300 2.1513 4.6026 13 6 10.3124 1.1636 4.5040 14 6 11.4423 1.9037 5.2533 15 7 10.8063 2.8929 6.1367 16 6 11.4646 3.7676 6.9593 17 1 10.9241 4.5728 7.4346 18 6 12.8267 3.6193 7.1824 19 7 13.5142 4.5986 7.7306 20 14 13.6837 2.0298 6.7045 21 1 15.0967 2.0731 7.1596 22 1 12.9923 0.8826 7.3455 23 1 13.6436 1.8702 5.2287 24 6 9.3415 2.7829 5.9950 25 6 7.8059 1.4046 4.5494 26 6 7.6603 0.7204 3.1841 27 7 3.4576 -0.6951 0.0050 28 7 2.2191 -1.0430 0.0064 29 1 -0.3634 0.0058 1.0276 30 1 -0.3635 0.8870 -0.5189 31 1 -0.3634 -0.8929 -0.5088 32 1 1.9380 2.1282 -0.0004 33 1 4.5247 2.5279 0.0770 34 1 5.3310 1.3074 -0.9373 35 1 5.9331 0.0179 1.0933 36 1 5.1269 1.2384 2.1075 37 1 9.0282 3.2933 1.3611 38 1 9.9477 1.8893 1.9586 39 1 8.4230 3.9338 3.6381 40 1 10.1874 3.7089 3.5716 41 1 10.5870 0.9930 3.4631 42 1 10.0721 0.2232 5.0000 43 1 12.0921 2.4087 4.5386 44 1 12.0203 1.1948 5.8462 45 1 13.0860 5.4500 7.9112 46 1 8.9323 2.1382 6.7729 47 1 8.8808 3.7698 6.0375 48 1 7.7812 0.6519 5.3373 49 1 6.9858 2.1081 4.6928 50 1 6.6636 0.2884 3.0960 51 1 8.4112 -0.0634 3.0858 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035261220.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:43 Heat of formation + Delta-G solvation = 95.705863 kcal Electronic energy + Delta-G solvation = -30806.436656 eV Core-core repulsion = 26744.032745 eV Total energy + Delta-G solvation = -4062.403911 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.63546 -40.56327 -38.89478 -36.08113 -35.53341 -33.86746 -33.15886 -31.47216 -31.27943 -30.27886 -29.04122 -28.38724 -27.26511 -25.41789 -23.74030 -23.03603 -22.85109 -22.49225 -21.31811 -20.47040 -19.62255 -18.20996 -17.75027 -17.27530 -17.02658 -16.86592 -15.92495 -15.87499 -15.37320 -15.25784 -15.03173 -14.53731 -14.28120 -13.90032 -13.77406 -13.70170 -13.59788 -13.26249 -13.18043 -13.04489 -12.76661 -12.63466 -12.33774 -12.22168 -11.95784 -11.75636 -11.63758 -11.40473 -11.26147 -11.12333 -11.02727 -10.93134 -10.47179 -10.40991 -10.32597 -10.20967 -9.95215 -9.76072 -9.49867 -9.28472 -8.92568 -8.68076 -8.58212 -6.98703 -6.27802 -3.18840 1.17589 1.92247 2.14078 2.58163 2.96053 3.44282 3.51583 3.73868 3.85115 4.09871 4.29321 4.38735 4.56358 4.63948 4.64829 4.68241 4.71559 4.76746 4.85664 4.95644 5.00180 5.05433 5.16795 5.22782 5.28585 5.32352 5.40405 5.43436 5.56220 5.65506 5.67024 5.73192 5.75999 5.81907 5.85339 5.90635 5.95656 6.00532 6.07630 6.11779 6.28725 6.34783 6.37392 6.43422 6.57051 6.68017 6.79662 6.81295 7.37071 7.71181 8.11594 8.12715 8.36791 9.07670 9.59670 10.27260 11.22876 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.027702 B = 0.001957 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.532349 B =14307.373938 C =14447.860672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.296 5.296 3 C -0.048 4.048 4 C -0.016 4.016 5 C -0.016 4.016 6 C -0.133 4.133 7 C 0.515 3.485 8 O -0.548 6.548 9 N -0.607 5.607 10 C 0.110 3.890 11 C -0.111 4.111 12 C -0.072 4.072 13 C -0.123 4.123 14 C 0.112 3.888 15 N -0.612 5.612 16 C -0.319 4.319 17 H 0.076 0.924 18 C -0.023 4.023 19 N -0.930 5.930 20 Si 1.073 2.927 21 H -0.303 1.303 22 H -0.300 1.300 23 H -0.287 1.287 24 C 0.147 3.853 25 C -0.117 4.117 26 C 0.107 3.893 27 N -0.264 5.264 28 N -0.087 5.087 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.191 0.809 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.044 0.956 44 H 0.026 0.974 45 H 0.261 0.739 46 H 0.023 0.977 47 H 0.042 0.958 48 H 0.077 0.923 49 H 0.066 0.934 50 H 0.084 0.916 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.937 -9.309 -16.345 32.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.090 5.090 3 C -0.199 4.199 4 C -0.155 4.155 5 C -0.055 4.055 6 C -0.173 4.173 7 C 0.304 3.696 8 O -0.426 6.426 9 N -0.340 5.340 10 C -0.011 4.011 11 C -0.149 4.149 12 C -0.073 4.073 13 C -0.161 4.161 14 C -0.013 4.013 15 N -0.339 5.339 16 C -0.446 4.446 17 H 0.094 0.906 18 C -0.222 4.222 19 N -0.572 5.572 20 Si 0.907 3.093 21 H -0.232 1.232 22 H -0.229 1.229 23 H -0.214 1.214 24 C 0.021 3.979 25 C -0.156 4.156 26 C -0.016 4.016 27 N -0.131 5.131 28 N -0.067 5.067 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.208 0.792 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.062 0.938 44 H 0.043 0.957 45 H 0.071 0.929 46 H 0.040 0.960 47 H 0.060 0.940 48 H 0.096 0.904 49 H 0.084 0.916 50 H 0.102 0.898 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -25.352 -11.123 -16.679 32.321 hybrid contribution -1.813 1.887 0.265 2.630 sum -27.164 -9.236 -16.414 33.055 Atomic orbital electron populations 1.22277 0.72690 1.05961 1.05094 1.47243 1.09436 1.04981 1.47314 1.23439 0.90871 0.94784 1.10805 1.22058 0.95369 0.91487 1.06538 1.19610 0.89329 0.97435 0.99165 1.21610 0.94042 1.01360 1.00318 1.20604 0.84550 0.83520 0.80927 1.90681 1.78758 1.35956 1.37211 1.48141 1.20187 1.38302 1.27396 1.21729 0.85505 0.95204 0.98707 1.21633 1.03421 0.97336 0.92511 1.21105 0.93812 0.95547 0.96801 1.22659 0.95523 0.97774 1.00116 1.21984 0.94929 0.91565 0.92790 1.44854 1.00064 1.41206 1.47794 1.20161 0.93231 1.06715 1.24499 0.90573 1.25848 0.92964 1.04667 0.98742 1.70892 1.37515 1.03587 1.45210 0.83800 0.74661 0.75122 0.75704 1.23170 1.22855 1.21415 1.21540 0.86568 0.97618 0.92170 1.21744 0.97696 0.99884 0.96262 1.21847 1.02197 0.90557 0.86995 1.75062 1.09377 1.12053 1.16573 1.78323 0.96478 1.12139 1.19736 0.88990 0.88250 0.88012 0.79167 0.89304 0.89217 0.88092 0.88956 0.89136 0.91277 0.91912 0.89610 0.91278 0.91537 0.93834 0.95685 0.92941 0.95952 0.93973 0.90431 0.91554 0.89815 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.13 11.39 59.84 0.68 0.81 16 2 N -0.30 -2.02 3.74 -68.06 -0.25 -2.28 16 3 C -0.05 -0.32 11.54 -17.05 -0.20 -0.51 16 4 C -0.02 -0.15 6.50 -82.78 -0.54 -0.69 16 5 C -0.02 -0.14 5.08 -27.88 -0.14 -0.28 16 6 C -0.13 -1.20 4.02 -27.88 -0.11 -1.31 16 7 C 0.52 6.23 7.70 -10.98 -0.08 6.14 16 8 O -0.55 -8.38 15.39 5.56 0.09 -8.30 16 9 N -0.61 -7.14 2.96 -172.55 -0.51 -7.65 16 10 C 0.11 1.46 6.12 -3.63 -0.02 1.44 16 11 C -0.11 -1.65 4.87 -27.01 -0.13 -1.79 16 12 C -0.07 -1.07 0.55 -153.98 -0.08 -1.16 16 13 C -0.12 -1.94 4.91 -25.24 -0.12 -2.07 16 14 C 0.11 2.40 4.24 -2.96 -0.01 2.38 16 15 N -0.61 -14.74 3.31 -170.17 -0.56 -15.31 16 16 C -0.32 -9.14 10.56 -15.06 -0.16 -9.30 16 17 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 18 C -0.02 -0.69 5.50 -17.43 -0.10 -0.79 16 19 N -0.93 -29.52 13.70 55.49 0.76 -28.76 16 20 Si 1.07 27.19 24.53 -169.99 -4.17 23.02 16 21 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 22 H -0.30 -7.35 6.84 56.52 0.39 -6.97 16 23 H -0.29 -6.63 5.43 56.52 0.31 -6.32 16 24 C 0.15 2.85 6.16 -2.74 -0.02 2.83 16 25 C -0.12 -1.34 4.84 -26.98 -0.13 -1.47 16 26 C 0.11 1.05 6.08 -3.60 -0.02 1.02 16 27 N -0.26 -3.05 12.40 33.29 0.41 -2.64 16 28 N -0.09 -0.92 13.16 60.35 0.79 -0.13 16 29 H 0.09 0.04 8.14 -51.93 -0.42 -0.39 16 30 H 0.10 -0.09 8.14 -51.93 -0.42 -0.51 16 31 H 0.10 0.10 8.14 -51.92 -0.42 -0.32 16 32 H 0.19 0.53 8.06 -52.48 -0.42 0.11 16 33 H 0.09 0.70 8.08 -51.93 -0.42 0.28 16 34 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 35 H 0.10 0.89 7.93 -51.93 -0.41 0.48 16 36 H 0.09 0.72 7.70 -51.93 -0.40 0.32 16 37 H 0.09 1.28 6.99 -51.93 -0.36 0.92 16 38 H 0.07 0.88 6.56 -51.93 -0.34 0.54 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 1.49 7.82 -51.93 -0.41 1.08 16 41 H 0.07 0.97 6.18 -51.93 -0.32 0.65 16 42 H 0.07 0.96 7.98 -51.93 -0.41 0.55 16 43 H 0.04 0.98 6.79 -51.93 -0.35 0.63 16 44 H 0.03 0.58 3.81 -51.93 -0.20 0.38 16 45 H 0.26 8.18 8.73 -40.82 -0.36 7.82 16 46 H 0.02 0.43 8.00 -51.93 -0.42 0.02 16 47 H 0.04 0.84 8.03 -51.93 -0.42 0.42 16 48 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.08 0.65 5.91 -51.93 -0.31 0.34 16 51 H 0.07 0.69 7.62 -51.93 -0.40 0.29 16 LS Contribution 389.75 15.07 5.87 5.87 Total: -1.00 -37.46 389.75 -6.99 -44.45 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -8.22 Total: -3.56 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -1.19 Total: -4.72 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.64 Total: -56.76 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.09 Total: -8.30 kcal Atomic # 14 Polarization: 27.19 SS G_CDS: -4.17 Total: 23.02 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.46 -6.99 -44.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035261220.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.152 kcal (2) G-P(sol) polarization free energy of solvation -37.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds